Wall clock time and date at job start Tue Mar 31 2020 10:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99967 * 2 1 4 4 H 1.48500 * 109.47245 * 270.00092 * 3 2 1 5 5 H 1.48506 * 109.47054 * 30.00359 * 3 2 1 6 6 H 1.48493 * 109.47134 * 150.00151 * 3 2 1 7 7 C 1.37871 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00078 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00467 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.77637 * 298.21181 * 9 7 2 11 11 C 1.55149 * 110.71957 * 61.45257 * 9 7 2 12 12 C 1.54912 * 101.58276 * 153.86452 * 11 9 7 13 13 N 1.47424 * 104.83227 * 322.99076 * 12 11 9 14 14 C 1.34777 * 125.64879 * 204.08629 * 13 12 11 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99928 * 0.30383 * 14 13 12 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 C 1.33342 * 125.19045 * 90.00297 * 17 16 14 19 19 C 1.38473 * 114.93180 * 179.97438 * 18 17 16 20 20 C 1.33497 * 114.88028 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 125.20843 * 180.02562 * 20 19 18 22 22 S 1.75876 * 125.18551 * 269.69009 * 17 16 14 23 23 C 1.47020 * 108.70071 * 24.35330 * 13 12 11 24 24 H 0.97001 * 120.00065 * 359.97438 * 1 2 3 25 25 H 0.96700 * 114.00155 * 61.78408 * 10 9 7 26 26 H 1.09006 * 111.00811 * 35.79576 * 11 9 7 27 27 H 1.08998 * 111.00493 * 271.94190 * 11 9 7 28 28 H 1.08993 * 110.36878 * 204.14992 * 12 11 9 29 29 H 1.09004 * 110.45528 * 81.87464 * 12 11 9 30 30 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 31 31 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 32 32 H 1.07999 * 122.53924 * 359.94716 * 18 17 16 33 33 H 1.08003 * 122.55899 * 179.97438 * 19 18 17 34 34 H 1.09004 * 109.88529 * 118.13378 * 23 13 12 35 35 H 1.09000 * 109.88341 * 239.29181 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 0.4502 -2.6232 1.1752 11 6 0.3765 -2.6270 -1.2768 12 6 0.2720 -4.1650 -1.4295 13 7 1.5931 -4.6755 -1.0201 14 6 2.1333 -5.8505 -1.3996 15 8 3.2325 -6.1702 -0.9989 16 6 1.3741 -6.7643 -2.3268 17 6 2.1947 -7.9987 -2.5985 18 6 2.1569 -9.1204 -1.8785 19 6 3.0017 -10.1254 -2.3188 20 6 3.7252 -9.8183 -3.3979 21 17 4.8646 -10.8744 -4.1727 22 16 3.3425 -8.1824 -3.9183 23 6 2.2210 -3.6934 -0.1242 24 1 -0.4850 0.8401 0.0004 25 1 -0.2296 -1.9410 1.2621 26 1 0.8744 -2.1819 -2.1384 27 1 -0.6065 -2.1820 -1.1227 28 1 0.0676 -4.4303 -2.4667 29 1 -0.5064 -4.5606 -0.7770 30 1 0.4302 -7.0503 -1.8626 31 1 1.1753 -6.2464 -3.2650 32 1 1.5163 -9.2363 -1.0168 33 1 3.0700 -11.0844 -1.8268 34 1 2.3884 -4.1396 0.8561 35 1 3.1678 -3.3577 -0.5474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854604.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:10 Heat of formation + Delta-G solvation = -56.899110 kcal Electronic energy + Delta-G solvation = -21272.902983 eV Core-core repulsion = 17809.481244 eV Total energy + Delta-G solvation = -3463.421740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.68954 -38.17383 -37.28781 -36.65892 -34.37423 -32.26845 -32.19367 -29.76003 -28.49261 -27.04593 -25.04627 -23.48878 -22.31780 -20.02175 -19.54569 -18.90439 -17.50764 -17.30564 -16.68487 -15.95435 -15.50371 -14.99161 -14.86085 -14.31357 -14.07040 -13.78526 -13.47566 -13.15827 -13.05388 -12.87613 -12.32645 -12.12245 -11.93544 -11.62040 -11.50334 -11.42051 -11.40042 -11.19367 -10.92608 -10.82933 -10.68643 -10.52366 -10.16975 -9.58840 -9.40086 -8.73375 -8.65366 -8.59750 -8.28647 -8.09122 -6.33360 -4.40807 0.67270 0.98563 1.70633 2.08927 2.48703 2.95072 3.17175 3.25005 3.29311 3.49333 4.23544 4.51101 4.84687 4.94462 5.02008 5.16404 5.33236 5.39496 5.49494 5.68131 5.78611 5.84446 5.94073 5.96647 6.14909 6.22084 6.39414 6.62719 6.83610 6.89652 7.23434 7.29155 7.68600 7.96955 8.01520 8.52104 8.62158 9.25090 9.34114 10.74191 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.032803 B = 0.002705 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.373858 B =10347.934228 C =10677.545996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.247 3.753 10 O -0.585 6.585 11 C -0.135 4.135 12 C 0.092 3.908 13 N -0.607 5.607 14 C 0.521 3.479 15 O -0.543 6.543 16 C -0.069 4.069 17 C -0.141 4.141 18 C -0.126 4.126 19 C -0.112 4.112 20 C -0.156 4.156 21 Cl -0.022 7.022 22 S 0.162 5.838 23 C 0.123 3.877 24 H 0.268 0.732 25 H 0.382 0.618 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.061 0.939 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.340 -15.834 -8.238 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.173 4.173 12 C -0.030 4.030 13 N -0.340 5.340 14 C 0.308 3.692 15 O -0.421 6.421 16 C -0.111 4.111 17 C -0.259 4.259 18 C -0.156 4.156 19 C -0.145 4.145 20 C -0.300 4.300 21 Cl 0.007 6.993 22 S 0.425 5.575 23 C 0.002 3.998 24 H 0.078 0.922 25 H 0.232 0.768 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.079 0.921 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.125 -15.645 -9.207 18.188 hybrid contribution -0.353 0.427 0.950 1.100 sum 0.773 -15.217 -8.257 17.330 Atomic orbital electron populations 1.69696 1.05938 1.27678 1.50226 1.24982 0.95045 0.99540 0.93441 0.86410 0.79932 0.82366 0.78263 1.20468 1.20998 1.19667 1.21502 0.93699 0.90166 1.51915 0.91766 1.19471 0.86946 0.90665 0.82240 1.86140 1.51680 1.56518 1.45079 1.23304 1.02962 0.90066 1.01010 1.22562 0.84285 0.97827 0.98372 1.48642 1.19556 1.18102 1.47735 1.19897 0.86384 0.80906 0.82011 1.90706 1.20473 1.73880 1.57023 1.20199 0.98338 0.91570 1.01020 1.23953 1.02646 0.98961 1.00380 1.19894 1.01912 0.92263 1.01514 1.20118 0.96921 1.01525 0.95924 1.25176 1.03864 0.97736 1.03181 1.98353 1.57934 1.63317 1.79743 1.84356 1.38096 1.06531 1.28482 1.22083 0.96768 0.88436 0.92533 0.92200 0.76780 0.91390 0.89265 0.92093 0.91746 0.86801 0.87770 0.83550 0.83516 0.92058 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.33 10.69 55.43 0.59 -21.73 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 3 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.53 -13.64 8.22 -34.44 -0.28 -13.93 16 8 H 0.06 1.66 7.57 -52.48 -0.40 1.26 16 9 C 0.25 5.74 0.84 -89.93 -0.08 5.66 16 10 O -0.59 -14.16 13.06 -35.23 -0.46 -14.62 16 11 C -0.13 -2.74 5.47 -24.59 -0.13 -2.88 16 12 C 0.09 1.52 6.68 -2.53 -0.02 1.51 16 13 N -0.61 -11.28 3.33 -170.51 -0.57 -11.85 16 14 C 0.52 9.11 7.84 -10.98 -0.09 9.02 16 15 O -0.54 -11.39 16.36 5.55 0.09 -11.30 16 16 C -0.07 -0.86 5.20 -29.03 -0.15 -1.01 16 17 C -0.14 -1.79 5.00 -36.02 -0.18 -1.97 16 18 C -0.13 -1.48 10.05 -41.20 -0.41 -1.90 16 19 C -0.11 -1.25 10.13 -41.15 -0.42 -1.67 16 20 C -0.16 -1.84 7.10 29.07 0.21 -1.63 16 21 Cl -0.02 -0.23 29.29 -51.86 -1.52 -1.75 16 22 S 0.16 1.99 23.33 -107.50 -2.51 -0.52 16 23 C 0.12 2.70 6.22 -3.06 -0.02 2.68 16 24 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 25 H 0.38 9.22 7.49 45.56 0.34 9.56 16 26 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 27 H 0.09 1.89 7.54 -51.93 -0.39 1.50 16 28 H 0.06 0.81 7.47 -51.93 -0.39 0.42 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.10 1.10 7.84 -51.93 -0.41 0.69 16 32 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 35 H 0.07 1.62 7.66 -51.93 -0.40 1.23 16 LS Contribution 327.33 15.07 4.93 4.93 Total: -1.00 -28.13 327.33 -9.43 -37.56 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -3.30 Total: 8.80 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -1.67 Total: -4.40 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.03 Total: -33.58 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.37 Total: -25.92 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.51 Total: -0.52 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.52 Total: -1.75 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.13 -9.43 -37.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854604.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.338 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds