Wall clock time and date at job start Tue Mar 31 2020 11:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99923 * 2 1 4 4 H 1.48498 * 109.47278 * 270.00028 * 3 2 1 5 5 H 1.48498 * 109.47109 * 30.00457 * 3 2 1 6 6 H 1.48507 * 109.46754 * 150.00197 * 3 2 1 7 7 C 1.37882 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99533 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99846 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99940 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00035 * 179.97438 * 13 12 11 16 16 C 1.50706 * 109.47294 * 180.02562 * 15 13 12 17 17 C 1.38212 * 119.98654 * 269.72952 * 16 15 13 18 18 C 1.38371 * 120.01374 * 179.76459 * 17 16 15 19 19 Cl 1.73598 * 120.01067 * 180.27531 * 18 17 16 20 20 C 1.38329 * 119.98039 * 0.53269 * 18 17 16 21 21 C 1.38332 * 119.97836 * 359.71702 * 20 18 17 22 22 Cl 1.73597 * 120.01085 * 179.97438 * 21 20 18 23 23 C 1.38217 * 119.98335 * 90.00129 * 16 15 13 24 24 H 0.96999 * 120.00022 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47324 * 59.99722 * 9 7 2 26 26 H 1.09004 * 109.47043 * 300.00089 * 9 7 2 27 27 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 28 28 H 1.08992 * 109.47303 * 300.00263 * 10 9 7 29 29 H 1.08998 * 109.46505 * 59.99871 * 11 10 9 30 30 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 31 31 H 0.97002 * 120.00387 * 0.02562 * 12 11 10 32 32 H 1.09001 * 109.46665 * 60.00498 * 15 13 12 33 33 H 1.09000 * 109.47722 * 300.00830 * 15 13 12 34 34 H 1.08001 * 119.99758 * 359.97438 * 17 16 15 35 35 H 1.08003 * 120.01502 * 179.70174 * 20 18 17 36 36 H 1.07999 * 119.99765 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9872 0.0001 12 7 2.4322 -6.1006 0.0007 13 6 1.9829 -7.3713 0.0019 14 8 0.7905 -7.5929 0.0019 15 6 2.9622 -8.5167 0.0019 16 6 2.2087 -9.8219 0.0027 17 6 1.8686 -10.4225 1.2001 18 6 1.1725 -11.6184 1.2015 19 17 0.7392 -12.3691 2.7056 20 6 0.8267 -12.2183 0.0040 21 6 1.1718 -11.6193 -1.1942 22 17 0.7387 -12.3717 -2.6975 23 6 1.8629 -10.4206 -1.1942 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6043 0.8895 28 1 2.8719 -3.6044 -0.8904 29 1 0.8533 -5.0450 -0.8896 30 1 0.8538 -5.0446 0.8903 31 1 3.3859 -5.9234 0.0011 32 1 3.5894 -8.4584 0.8915 33 1 3.5884 -8.4596 -0.8884 34 1 2.1433 -9.9567 2.1350 35 1 0.2875 -13.1541 0.0044 36 1 2.1323 -9.9528 -2.1295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599342351.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:29 Heat of formation + Delta-G solvation = -70.393347 kcal Electronic energy + Delta-G solvation = -19996.561135 eV Core-core repulsion = 16530.510535 eV Total energy + Delta-G solvation = -3466.050600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17602 -40.02317 -37.78311 -37.41989 -36.89393 -35.16660 -33.96059 -32.91953 -31.69233 -29.54814 -27.95221 -24.99955 -23.88892 -23.07101 -22.28522 -21.16560 -18.60944 -18.27094 -17.91473 -17.27237 -16.95422 -16.59142 -16.55083 -16.31801 -15.54761 -15.25573 -15.08934 -14.61935 -14.28525 -14.19246 -13.73397 -13.65172 -13.37210 -13.12456 -13.00348 -12.74730 -12.54266 -12.53344 -12.36442 -12.08407 -12.01930 -11.97817 -11.65256 -11.57642 -11.23397 -10.88081 -10.55058 -10.05387 -9.88905 -9.77078 -8.19201 -6.30708 -0.05507 -0.03539 0.76728 1.22531 1.42393 1.43598 1.54525 1.68306 2.11994 2.41879 2.56006 3.14748 3.41786 3.88926 3.93097 3.95821 4.07518 4.12886 4.21633 4.24278 4.39555 4.57704 4.59273 4.69135 4.94399 4.96679 5.01430 5.03780 5.19115 5.25568 5.46324 5.49106 5.55179 5.71998 5.85189 6.22690 6.63700 6.87581 7.32462 7.39191 8.92947 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.021742 B = 0.002073 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.539372 B =13501.789729 C =14199.513511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.130 3.870 12 N -0.714 5.714 13 C 0.506 3.494 14 O -0.586 6.586 15 C -0.093 4.093 16 C -0.046 4.046 17 C -0.098 4.098 18 C -0.032 4.032 19 Cl -0.058 7.058 20 C -0.110 4.110 21 C -0.032 4.032 22 Cl -0.058 7.058 23 C -0.098 4.098 24 H 0.263 0.737 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.419 0.581 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.719 -27.364 0.012 29.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.006 3.994 12 N -0.366 5.366 13 C 0.294 3.706 14 O -0.466 6.466 15 C -0.132 4.132 16 C -0.047 4.047 17 C -0.117 4.117 18 C -0.059 4.059 19 Cl -0.029 7.029 20 C -0.129 4.129 21 C -0.059 4.059 22 Cl -0.029 7.029 23 C -0.117 4.117 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.256 0.744 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.661 -27.540 0.016 28.870 hybrid contribution -0.132 0.987 -0.010 0.995 sum 8.530 -26.553 0.006 27.889 Atomic orbital electron populations 1.70117 1.07996 1.27777 1.51799 1.26043 0.95732 1.03622 0.94842 0.85417 0.78719 0.78273 0.78452 1.19832 1.21184 1.18285 1.21697 0.93797 0.91980 1.50280 0.91385 1.18957 0.94525 0.93176 0.94919 1.21586 0.98340 0.91721 1.02241 1.21180 0.92071 0.85794 1.00397 1.45955 1.11237 1.04917 1.74502 1.21194 0.89666 0.84560 0.75219 1.90741 1.19299 1.85369 1.51227 1.20783 0.96565 0.86549 1.09313 1.19351 0.98024 0.95449 0.91836 1.21243 0.97250 0.93556 0.99651 1.20774 1.01864 0.95861 0.87387 1.98386 1.91850 1.81579 1.31067 1.21030 1.01048 1.01597 0.89237 1.20772 1.01902 0.95818 0.87395 1.98386 1.91857 1.81503 1.31138 1.21241 0.97266 0.93525 0.99666 0.92852 0.99145 0.99143 0.91223 0.91199 0.93556 0.93570 0.74400 0.83940 0.83946 0.83174 0.82910 0.83194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.99 13.29 21.45 0.28 -56.71 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.54 -29.60 9.11 25.60 0.23 -29.37 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.10 -3.68 5.27 30.60 0.16 -3.52 16 11 C 0.13 4.31 5.67 86.38 0.49 4.80 16 12 N -0.71 -16.52 5.56 -463.06 -2.57 -19.09 16 13 C 0.51 12.00 7.82 87.66 0.69 12.68 16 14 O -0.59 -20.28 16.03 -3.04 -0.05 -20.33 16 15 C -0.09 -1.17 5.83 29.10 0.17 -1.00 16 16 C -0.05 -0.77 4.37 -19.87 -0.09 -0.86 16 17 C -0.10 -1.73 9.48 22.30 0.21 -1.52 16 18 C -0.03 -0.59 6.32 22.32 0.14 -0.45 16 19 Cl -0.06 -1.00 28.96 -2.72 -0.08 -1.08 16 20 C -0.11 -1.96 9.62 22.31 0.21 -1.74 16 21 C -0.03 -0.59 6.32 22.32 0.14 -0.45 16 22 Cl -0.06 -1.00 28.96 -2.72 -0.08 -1.08 16 23 C -0.10 -1.73 9.48 22.30 0.21 -1.52 16 24 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 25 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 26 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 27 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.42 6.45 8.47 -92.71 -0.79 5.66 16 32 H 0.14 0.90 8.08 -2.39 -0.02 0.88 16 33 H 0.14 0.90 8.08 -2.39 -0.02 0.88 16 34 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -72.12 347.10 3.03 -69.08 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 0.32 Total: 5.41 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 3.18 Total: -21.49 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -2.29 Total: -75.80 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.05 Total: -20.33 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.16 Total: -2.15 kcal Total: -72.12 3.03 -69.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599342351.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.309 kcal (2) G-P(sol) polarization free energy of solvation -72.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds