Wall clock time and date at job start Tue Mar 31 2020 10:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46632 * 2 1 4 4 C 1.37094 * 120.00708 * 264.74701 * 3 2 1 5 5 H 1.07998 * 120.00662 * 146.15931 * 4 3 2 6 6 C 1.38949 * 119.99637 * 326.17147 * 4 3 2 7 7 N 1.31413 * 120.00286 * 337.68289 * 6 4 3 8 8 Si 1.86802 * 120.00157 * 157.69087 * 6 4 3 9 9 H 1.48503 * 109.47344 * 59.99429 * 8 6 4 10 10 H 1.48497 * 109.47252 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46848 * 299.99332 * 8 6 4 12 12 C 1.34784 * 119.99657 * 84.74886 * 3 2 1 13 13 O 1.21296 * 120.00017 * 180.27113 * 12 3 2 14 14 C 1.50692 * 120.00142 * 0.02562 * 12 3 2 15 15 C 1.53002 * 109.47607 * 179.97438 * 14 12 3 16 16 N 1.46501 * 109.47408 * 179.97438 * 15 14 12 17 17 C 1.35009 * 126.03183 * 124.99828 * 16 15 14 18 18 C 1.35366 * 107.72786 * 179.97438 * 17 16 15 19 19 Br 1.89108 * 126.04511 * 179.97438 * 18 17 16 20 20 C 1.39919 * 107.91018 * 359.97438 * 18 17 16 21 21 N 1.30847 * 108.20675 * 359.75545 * 20 18 17 22 22 H 1.09005 * 109.46525 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46678 * 299.99289 * 1 2 3 24 24 H 1.09000 * 109.46951 * 59.99854 * 1 2 3 25 25 H 1.08996 * 109.46975 * 240.01091 * 2 1 3 26 26 H 1.08989 * 109.47285 * 119.99788 * 2 1 3 27 27 H 0.96994 * 120.00460 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47206 * 299.99752 * 14 12 3 29 29 H 1.08997 * 109.47681 * 59.99397 * 14 12 3 30 30 H 1.09003 * 109.46667 * 300.00121 * 15 14 12 31 31 H 1.08997 * 109.47060 * 59.99056 * 15 14 12 32 32 H 1.07996 * 126.13968 * 359.94121 * 17 16 15 33 33 H 1.07999 * 125.89286 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3493 1.9915 -1.1822 5 1 2.1813 3.0508 -1.3088 6 6 2.9006 1.2469 -2.2177 7 7 3.5051 0.1090 -1.9594 8 14 2.7828 1.8635 -3.9771 9 1 3.4562 3.1826 -4.0856 10 1 3.4446 0.8941 -4.8867 11 1 1.3542 2.0042 -4.3576 12 6 2.1421 2.0522 1.1624 13 8 2.5417 3.1975 1.1620 14 6 1.7790 1.3814 2.4620 15 6 2.0104 2.3540 3.6202 16 7 1.6567 1.7020 4.8836 17 6 2.4586 1.5722 5.9620 18 6 1.7612 0.9136 6.9172 19 35 2.3934 0.4552 8.6395 20 6 0.4900 0.6321 6.4049 21 7 0.4247 1.1092 5.1882 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5136 -0.8901 26 1 1.8934 -0.5137 0.8899 27 1 3.8904 -0.4106 -2.6822 28 1 0.7296 1.0873 2.4383 29 1 2.4010 0.4971 2.6008 30 1 3.0598 2.6477 3.6438 31 1 1.3887 3.2385 3.4816 32 1 3.4742 1.9292 6.0471 33 1 -0.3019 0.1139 6.9253 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604481273.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:39 Heat of formation + Delta-G solvation = 46.913801 kcal Electronic energy + Delta-G solvation = -18243.144849 eV Core-core repulsion = 15159.336969 eV Total energy + Delta-G solvation = -3083.807880 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.032 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.29429 -38.73162 -35.27314 -34.07147 -32.14183 -31.67441 -30.31950 -29.51734 -28.43458 -25.54729 -23.79484 -22.26987 -21.01818 -20.80903 -18.78655 -17.40604 -16.78672 -15.80764 -15.60417 -14.91961 -14.64129 -14.25322 -14.15413 -13.51027 -13.28366 -13.11406 -12.90428 -12.44100 -12.13948 -11.78964 -11.71063 -11.20755 -11.12731 -11.04415 -10.95426 -10.86634 -10.41943 -10.36090 -10.15813 -10.12765 -9.58831 -9.01593 -8.62357 -8.42689 -7.58990 -6.41246 -4.02653 1.58083 1.71342 2.49329 2.60234 3.14070 3.21291 3.24821 3.77806 4.07661 4.44130 4.67821 4.83090 4.96692 5.04323 5.20039 5.41766 5.46882 5.56022 5.71962 5.89223 5.98474 6.14447 6.19753 6.27746 6.38557 6.50233 6.82515 6.84276 7.20909 7.51011 7.52315 8.14305 8.40502 9.08146 9.32107 9.89216 10.62278 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.038678 B = 0.002697 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.747585 B =10379.997589 C =10501.348511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.433 5.433 4 C -0.311 4.311 5 H 0.094 0.906 6 C 0.037 3.963 7 N -0.868 5.868 8 Si 0.919 3.081 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.458 3.542 13 O -0.589 6.589 14 C -0.145 4.145 15 C 0.149 3.851 16 N -0.352 5.352 17 C 0.098 3.902 18 C -0.251 4.251 19 Br -0.031 7.031 20 C 0.071 3.929 21 N -0.280 5.280 22 H 0.051 0.949 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.114 0.886 26 H 0.047 0.953 27 H 0.269 0.731 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.182 0.818 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.183 -2.939 17.787 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.030 4.030 3 N -0.151 5.151 4 C -0.439 4.439 5 H 0.111 0.889 6 C -0.167 4.167 7 N -0.505 5.505 8 Si 0.745 3.255 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.245 3.755 13 O -0.474 6.474 14 C -0.186 4.186 15 C 0.028 3.972 16 N -0.132 5.132 17 C -0.053 4.053 18 C -0.342 4.342 19 Br 0.051 6.949 20 C -0.117 4.117 21 N -0.101 5.101 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.132 0.868 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.200 0.800 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.355 -2.477 17.053 17.555 hybrid contribution 0.380 -0.020 -0.478 0.611 sum -2.975 -2.498 16.575 17.024 Atomic orbital electron populations 1.22201 0.97999 1.00500 1.01565 1.21629 0.91899 0.85320 1.04164 1.43506 1.54896 1.11873 1.04822 1.19445 1.40116 0.95571 0.88767 0.88876 1.25346 0.94340 0.96426 1.00624 1.69906 1.32215 1.15235 1.33186 0.86115 0.78719 0.78801 0.81820 1.19669 1.20922 1.19823 1.19961 0.83027 0.87976 0.84524 1.90530 1.51439 1.18545 1.86897 1.21848 1.04149 0.99133 0.93448 1.21696 1.02877 0.95001 0.77585 1.49027 1.09127 1.42722 1.12365 1.22486 0.97827 0.98247 0.86783 1.21715 0.98636 1.18105 0.95772 1.96573 1.88141 1.92899 1.17244 1.23817 0.96286 0.99345 0.92239 1.77491 1.01933 1.15124 1.15570 0.93004 0.93793 0.92396 0.86809 0.93433 0.92042 0.88859 0.89723 0.87492 0.88490 0.80045 0.79509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.15 37.16 0.38 -2.59 16 2 C 0.09 2.01 5.44 -4.04 -0.02 1.98 16 3 N -0.43 -10.65 2.56 -114.81 -0.29 -10.94 16 4 C -0.31 -8.42 8.98 -14.94 -0.13 -8.56 16 5 H 0.09 2.64 7.70 -52.49 -0.40 2.23 16 6 C 0.04 0.95 4.92 -17.47 -0.09 0.87 16 7 N -0.87 -22.78 11.33 55.50 0.63 -22.15 16 8 Si 0.92 20.13 29.61 -169.99 -5.03 15.09 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 C 0.46 10.61 7.59 -10.99 -0.08 10.53 16 13 O -0.59 -15.39 15.80 5.54 0.09 -15.30 16 14 C -0.14 -2.56 4.50 -27.89 -0.13 -2.69 16 15 C 0.15 2.27 5.80 -4.04 -0.02 2.25 16 16 N -0.35 -4.99 3.68 -61.34 -0.23 -5.22 16 17 C 0.10 1.18 11.41 -17.18 -0.20 0.99 16 18 C -0.25 -2.98 6.53 -39.98 -0.26 -3.24 16 19 Br -0.03 -0.32 34.08 -68.01 -2.32 -2.63 16 20 C 0.07 0.87 12.01 -17.34 -0.21 0.66 16 21 N -0.28 -4.14 12.42 30.64 0.38 -3.76 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.75 6.60 -51.93 -0.34 0.41 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.11 2.69 5.34 -51.93 -0.28 2.41 16 26 H 0.05 0.93 6.66 -51.94 -0.35 0.59 16 27 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.09 1.62 6.54 -51.93 -0.34 1.28 16 29 H 0.08 1.46 7.41 -51.93 -0.38 1.07 16 30 H 0.11 1.53 8.03 -51.93 -0.42 1.12 16 31 H 0.10 1.53 8.10 -51.93 -0.42 1.11 16 32 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.19 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -30.00 305.20 -6.69 -36.70 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -3.76 Total: 3.42 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -0.76 Total: 0.19 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.49 Total: -42.07 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.09 Total: -15.30 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.09 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -2.32 Total: -2.63 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.00 -6.69 -36.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604481273.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.612 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds