Wall clock time and date at job start Tue Mar 31 2020 10:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46632 * 2 1 4 4 C 1.37094 * 120.00708 * 264.74701 * 3 2 1 5 5 H 1.07998 * 120.00662 * 146.15931 * 4 3 2 6 6 C 1.38949 * 119.99637 * 326.17147 * 4 3 2 7 7 N 1.31413 * 120.00286 * 337.68289 * 6 4 3 8 8 Si 1.86802 * 120.00157 * 157.69087 * 6 4 3 9 9 H 1.48503 * 109.47344 * 59.99429 * 8 6 4 10 10 H 1.48497 * 109.47252 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46848 * 299.99332 * 8 6 4 12 12 C 1.34784 * 119.99657 * 84.74886 * 3 2 1 13 13 O 1.21296 * 120.00017 * 180.27113 * 12 3 2 14 14 C 1.50692 * 120.00142 * 0.02562 * 12 3 2 15 15 C 1.53002 * 109.47607 * 179.97438 * 14 12 3 16 16 N 1.46501 * 109.47408 * 179.97438 * 15 14 12 17 17 C 1.35009 * 126.03183 * 124.99828 * 16 15 14 18 18 C 1.35366 * 107.72786 * 179.97438 * 17 16 15 19 19 Br 1.89108 * 126.04511 * 179.97438 * 18 17 16 20 20 C 1.39919 * 107.91018 * 359.97438 * 18 17 16 21 21 N 1.30847 * 108.20675 * 359.75545 * 20 18 17 22 22 H 1.09005 * 109.46525 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46678 * 299.99289 * 1 2 3 24 24 H 1.09000 * 109.46951 * 59.99854 * 1 2 3 25 25 H 1.08996 * 109.46975 * 240.01091 * 2 1 3 26 26 H 1.08989 * 109.47285 * 119.99788 * 2 1 3 27 27 H 0.96994 * 120.00460 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47206 * 299.99752 * 14 12 3 29 29 H 1.08997 * 109.47681 * 59.99397 * 14 12 3 30 30 H 1.09003 * 109.46667 * 300.00121 * 15 14 12 31 31 H 1.08997 * 109.47060 * 59.99056 * 15 14 12 32 32 H 1.07996 * 126.13968 * 359.94121 * 17 16 15 33 33 H 1.07999 * 125.89286 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3493 1.9915 -1.1822 5 1 2.1813 3.0508 -1.3088 6 6 2.9006 1.2469 -2.2177 7 7 3.5051 0.1090 -1.9594 8 14 2.7828 1.8635 -3.9771 9 1 3.4562 3.1826 -4.0856 10 1 3.4446 0.8941 -4.8867 11 1 1.3542 2.0042 -4.3576 12 6 2.1421 2.0522 1.1624 13 8 2.5417 3.1975 1.1620 14 6 1.7790 1.3814 2.4620 15 6 2.0104 2.3540 3.6202 16 7 1.6567 1.7020 4.8836 17 6 2.4586 1.5722 5.9620 18 6 1.7612 0.9136 6.9172 19 35 2.3934 0.4552 8.6395 20 6 0.4900 0.6321 6.4049 21 7 0.4247 1.1092 5.1882 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5136 -0.8901 26 1 1.8934 -0.5137 0.8899 27 1 3.8904 -0.4106 -2.6822 28 1 0.7296 1.0873 2.4383 29 1 2.4010 0.4971 2.6008 30 1 3.0598 2.6477 3.6438 31 1 1.3887 3.2385 3.4816 32 1 3.4742 1.9292 6.0471 33 1 -0.3019 0.1139 6.9253 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604481273.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:39 Heat of formation + Delta-G solvation = 29.251671 kcal Electronic energy + Delta-G solvation = -18243.910736 eV Core-core repulsion = 15159.336969 eV Total energy + Delta-G solvation = -3084.573767 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.032 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.28741 -40.52704 -37.08140 -35.36747 -34.01800 -32.60472 -31.55794 -31.18031 -29.50083 -27.24697 -25.25587 -23.90177 -22.00097 -21.91983 -20.49318 -18.88068 -18.41778 -17.36622 -17.12757 -16.44539 -16.19742 -15.78807 -15.32400 -14.78686 -14.64937 -14.51421 -14.11544 -13.94665 -13.63945 -13.44509 -13.30217 -12.85389 -12.68429 -12.54763 -12.21934 -12.12793 -11.96672 -11.90989 -11.76804 -11.02559 -10.92019 -10.64400 -10.42850 -9.51487 -9.42613 -8.37187 -6.06789 0.65185 0.74704 1.37897 1.42040 1.51280 1.56610 1.58074 1.97584 2.28441 2.97383 3.01619 3.53442 3.75991 3.85275 3.93558 4.08370 4.22434 4.37267 4.44693 4.54838 4.60234 4.70422 4.76678 4.88667 5.01287 5.27430 5.39641 5.44087 5.54406 5.80094 6.16916 6.47517 6.53419 7.13286 7.43419 8.00394 8.64817 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.038678 B = 0.002697 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.747585 B =10379.997589 C =10501.348511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.094 3.906 3 N -0.448 5.448 4 C -0.346 4.346 5 H 0.068 0.932 6 C 0.006 3.994 7 N -0.886 5.886 8 Si 0.980 3.020 9 H -0.276 1.276 10 H -0.272 1.272 11 H -0.266 1.266 12 C 0.448 3.552 13 O -0.627 6.627 14 C -0.125 4.125 15 C 0.160 3.840 16 N -0.365 5.365 17 C 0.098 3.902 18 C -0.258 4.258 19 Br -0.013 7.013 20 C 0.076 3.924 21 N -0.316 5.316 22 H 0.082 0.918 23 H 0.051 0.949 24 H 0.042 0.958 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.275 0.725 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.208 0.792 33 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 -3.949 18.739 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.029 4.029 3 N -0.166 5.166 4 C -0.474 4.474 5 H 0.085 0.915 6 C -0.197 4.197 7 N -0.523 5.523 8 Si 0.804 3.196 9 H -0.201 1.201 10 H -0.196 1.196 11 H -0.190 1.190 12 C 0.237 3.763 13 O -0.514 6.514 14 C -0.165 4.165 15 C 0.039 3.961 16 N -0.145 5.145 17 C -0.052 4.052 18 C -0.349 4.349 19 Br 0.069 6.931 20 C -0.112 4.112 21 N -0.136 5.136 22 H 0.101 0.899 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.133 0.867 31 H 0.105 0.895 32 H 0.224 0.776 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.676 -3.520 18.025 18.730 hybrid contribution 0.507 0.259 -0.655 0.868 sum -3.169 -3.261 17.370 17.956 Atomic orbital electron populations 1.22093 0.95440 1.02423 1.01205 1.21692 0.93966 0.83557 1.03720 1.43776 1.55152 1.12998 1.04699 1.19405 1.42103 0.95040 0.90859 0.91464 1.26050 0.93397 0.96507 1.03755 1.69969 1.32090 1.15869 1.34389 0.85204 0.78974 0.78137 0.77329 1.20124 1.19639 1.19044 1.20802 0.81950 0.87593 0.85943 1.90492 1.52918 1.20296 1.87736 1.21636 1.04405 0.99267 0.91238 1.21423 1.03176 0.93957 0.77561 1.48848 1.09601 1.43684 1.12376 1.22988 0.98663 0.97518 0.86020 1.21902 0.98576 1.17824 0.96572 1.96597 1.87928 1.92756 1.15802 1.24318 0.97072 0.98205 0.91555 1.77457 1.02592 1.16571 1.17026 0.89875 0.92979 0.93884 0.89048 0.91898 0.91543 0.88220 0.88907 0.86696 0.89497 0.77560 0.76981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 10.15 71.98 0.73 -4.62 16 2 C 0.09 3.97 5.44 86.38 0.47 4.44 16 3 N -0.45 -22.40 2.56 -635.54 -1.63 -24.02 16 4 C -0.35 -19.24 8.98 84.04 0.75 -18.49 16 5 H 0.07 3.99 7.70 -2.91 -0.02 3.97 16 6 C 0.01 0.30 4.92 84.93 0.42 0.72 16 7 N -0.89 -46.59 11.33 21.66 0.25 -46.34 16 8 Si 0.98 41.39 29.61 68.60 2.03 43.42 16 9 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 11 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 12 C 0.45 21.08 7.59 87.65 0.67 21.74 16 13 O -0.63 -33.69 15.80 -3.08 -0.05 -33.74 16 14 C -0.12 -4.34 4.50 29.85 0.13 -4.21 16 15 C 0.16 4.79 5.80 86.38 0.50 5.29 16 16 N -0.36 -9.83 3.68 -347.97 -1.28 -11.11 16 17 C 0.10 2.17 11.41 83.54 0.95 3.13 16 18 C -0.26 -5.55 6.53 22.01 0.14 -5.40 16 19 Br -0.01 -0.24 34.08 -20.37 -0.69 -0.94 16 20 C 0.08 1.71 12.01 85.25 1.02 2.74 16 21 N -0.32 -8.85 12.42 -56.99 -0.71 -9.56 16 22 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 23 H 0.05 1.71 6.60 -2.39 -0.02 1.70 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.09 4.32 5.34 -2.39 -0.01 4.31 16 26 H 0.06 2.41 6.66 -2.39 -0.02 2.39 16 27 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 28 H 0.10 3.35 6.54 -2.39 -0.02 3.34 16 29 H 0.09 3.08 7.41 -2.39 -0.02 3.07 16 30 H 0.11 3.22 8.03 -2.39 -0.02 3.20 16 31 H 0.09 2.76 8.10 -2.39 -0.02 2.74 16 32 H 0.21 3.28 8.06 -2.91 -0.02 3.26 16 33 H 0.21 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -65.14 305.20 4.84 -60.30 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.13 Total: 16.64 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 5.79 Total: 5.35 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -3.37 Total: -91.03 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.05 Total: -33.74 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -0.69 Total: -0.94 kcal Total: -65.14 4.84 -60.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604481273.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.549 kcal (2) G-P(sol) polarization free energy of solvation -65.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds