Wall clock time and date at job start Tue Mar 31 2020 11:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00093 * 2 1 4 4 H 1.48491 * 109.47167 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47108 * 299.99993 * 3 2 1 6 6 H 1.48498 * 109.47228 * 59.99845 * 3 2 1 7 7 C 1.37881 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99445 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00243 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47045 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47046 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54248 * 291.62447 * 11 10 9 13 13 O 1.42099 * 110.54390 * 68.37491 * 11 10 9 14 14 O 1.52205 * 104.44985 * 179.97438 * 11 10 9 15 15 C 1.35894 * 113.99969 * 75.00131 * 14 11 10 16 16 C 1.38810 * 120.01829 * 269.72464 * 15 14 11 17 17 C 1.38175 * 120.08025 * 179.76796 * 16 15 14 18 18 C 1.38170 * 120.12461 * 0.50849 * 17 16 15 19 19 C 1.38878 * 120.03993 * 359.74399 * 18 17 16 20 20 N 1.39950 * 120.04382 * 180.02562 * 19 18 17 21 21 C 1.34774 * 120.00364 * 213.26941 * 20 19 18 22 22 O 1.21513 * 119.99333 * 5.31981 * 21 20 19 23 23 O 1.34640 * 120.00201 * 185.31492 * 21 20 19 24 24 C 1.38587 * 120.02362 * 89.99709 * 15 14 11 25 25 H 0.97001 * 120.00423 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46775 * 60.00185 * 9 7 2 27 27 H 1.09001 * 109.46637 * 300.00126 * 9 7 2 28 28 H 1.09005 * 109.47196 * 60.00166 * 10 9 7 29 29 H 1.09000 * 109.47074 * 300.00239 * 10 9 7 30 30 H 1.07995 * 119.96236 * 0.02562 * 16 15 14 31 31 H 1.07993 * 119.93582 * 180.25316 * 17 16 15 32 32 H 1.07998 * 119.98000 * 179.77003 * 18 17 16 33 33 H 0.97001 * 119.99279 * 33.27425 * 20 19 18 34 34 H 0.96695 * 117.00247 * 180.02562 * 23 21 20 35 35 H 1.08004 * 120.06012 * 359.95751 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3382 -5.2330 -0.0013 12 8 0.6637 -5.4200 1.2354 13 8 0.6646 -5.4193 -1.2385 14 8 2.4247 -6.2989 -0.0019 15 6 3.0443 -6.4572 1.1972 16 6 4.1773 -5.7133 1.4970 17 6 4.8055 -5.8698 2.7176 18 6 4.3144 -6.7745 3.6394 19 6 3.1843 -7.5252 3.3427 20 7 2.6865 -8.4411 4.2764 21 6 2.1004 -9.5799 3.8570 22 8 2.0899 -9.8577 2.6741 23 8 1.5266 -10.4097 4.7486 24 6 2.5488 -7.3655 2.1192 25 1 -0.4851 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 2.8718 -3.6044 0.8895 29 1 2.8718 -3.6043 -0.8905 30 1 4.5658 -5.0084 0.7769 31 1 5.6844 -5.2869 2.9500 32 1 4.8095 -6.8976 4.5913 33 1 2.7634 -8.2562 5.2255 34 1 1.1192 -11.2145 4.4003 35 1 1.6696 -7.9479 1.8861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738428796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:00 Heat of formation + Delta-G solvation = -194.095267 kcal Electronic energy + Delta-G solvation = -24008.090902 eV Core-core repulsion = 20098.010726 eV Total energy + Delta-G solvation = -3910.080176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.070 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.38066 -41.55820 -39.38463 -38.37563 -37.30293 -37.18864 -36.04660 -35.85712 -33.20704 -31.65578 -30.74483 -27.68379 -25.12785 -24.83469 -23.68887 -22.56471 -21.68321 -20.22936 -19.55916 -19.15831 -18.55367 -18.45541 -17.91357 -17.57738 -17.12940 -16.96216 -16.52095 -16.32568 -16.11928 -15.21031 -14.79205 -14.74427 -14.59275 -14.41705 -14.13789 -13.77623 -13.61152 -13.41207 -13.30789 -12.99045 -12.90756 -12.79482 -12.75672 -12.67057 -12.28208 -12.11507 -11.92930 -11.72999 -11.60596 -11.10547 -10.63648 -10.02960 -9.43691 -8.23756 -6.37779 -1.05550 -0.03146 0.14548 1.06991 1.20439 1.44420 1.45305 1.55645 1.58530 2.39744 2.51287 2.56014 2.90224 3.10450 3.38934 3.67481 3.79633 3.92019 3.95901 4.02255 4.12771 4.27129 4.40745 4.69778 4.95016 4.97699 5.07557 5.17197 5.24265 5.25305 5.26638 5.63059 5.70280 5.80004 6.06208 6.17747 6.75926 7.21783 7.32508 8.88974 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.020698 B = 0.003515 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.450794 B = 7963.849325 C = 8472.999757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.976 3.024 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.082 0.918 9 C 0.022 3.978 10 C -0.598 4.598 11 S 2.590 3.410 12 O -0.983 6.983 13 O -0.978 6.978 14 O -0.668 6.668 15 C 0.052 3.948 16 C -0.144 4.144 17 C -0.067 4.067 18 C -0.104 4.104 19 C 0.161 3.839 20 N -0.633 5.633 21 C 0.663 3.337 22 O -0.601 6.601 23 O -0.506 6.506 24 C -0.130 4.130 25 H 0.267 0.733 26 H 0.006 0.994 27 H 0.012 0.988 28 H 0.156 0.844 29 H 0.152 0.848 30 H 0.167 0.833 31 H 0.194 0.806 32 H 0.189 0.811 33 H 0.440 0.560 34 H 0.451 0.549 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.600 -16.123 13.504 25.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.800 3.200 4 H -0.174 1.174 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.574 4.574 8 H 0.101 0.899 9 C -0.016 4.016 10 C -0.730 4.730 11 S 2.692 3.308 12 O -0.981 6.981 13 O -0.977 6.977 14 O -0.627 6.627 15 C 0.010 3.990 16 C -0.165 4.165 17 C -0.085 4.085 18 C -0.124 4.124 19 C 0.067 3.933 20 N -0.288 5.288 21 C 0.417 3.583 22 O -0.492 6.492 23 O -0.318 6.318 24 C -0.153 4.153 25 H 0.075 0.925 26 H 0.024 0.976 27 H 0.030 0.970 28 H 0.174 0.826 29 H 0.170 0.830 30 H 0.185 0.815 31 H 0.211 0.789 32 H 0.206 0.794 33 H 0.282 0.718 34 H 0.316 0.684 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.996 -16.565 12.970 24.729 hybrid contribution -0.717 0.603 -0.513 1.068 sum 12.279 -15.963 12.457 23.680 Atomic orbital electron populations 1.70116 1.08190 1.28262 1.50987 1.26140 0.95828 1.03964 0.94403 0.85229 0.79365 0.77835 0.77597 1.17449 1.20836 1.20395 1.21539 0.94216 0.90277 1.51328 0.89940 1.18831 0.93423 0.92724 0.96657 1.30523 1.13292 1.15719 1.13416 1.05515 0.75153 0.76984 0.73197 1.93537 1.73753 1.84354 1.46499 1.93520 1.72100 1.85338 1.46701 1.85725 1.64609 1.70768 1.41571 1.18274 0.96928 1.02416 0.81362 1.21915 0.93722 1.00212 1.00646 1.21455 1.00301 0.96682 0.90105 1.21604 0.92089 0.95701 1.03028 1.17308 0.94575 0.92550 0.88851 1.41684 1.59323 1.16599 1.11214 1.17905 0.76893 0.80976 0.82572 1.91118 1.63695 1.76166 1.18225 1.84143 1.69593 1.37211 1.40871 1.21215 1.00793 0.98442 0.94810 0.92450 0.97591 0.97004 0.82629 0.82972 0.81519 0.78911 0.79360 0.71842 0.68432 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.37 13.29 21.45 0.28 -56.09 16 2 C -0.01 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.98 42.15 29.54 68.60 2.03 44.18 16 4 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.53 -28.76 9.11 25.60 0.23 -28.53 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 9 C 0.02 1.16 4.98 29.85 0.15 1.31 16 10 C -0.60 -22.80 5.41 71.98 0.39 -22.41 16 11 S 2.59 105.53 5.17 -56.49 -0.29 105.24 16 12 O -0.98 -43.69 16.26 -118.57 -1.93 -45.62 16 13 O -0.98 -46.93 18.09 -118.57 -2.15 -49.07 16 14 O -0.67 -23.83 10.05 -61.45 -0.62 -24.44 16 15 C 0.05 1.60 4.79 22.49 0.11 1.71 16 16 C -0.14 -3.06 8.46 22.39 0.19 -2.87 16 17 C -0.07 -0.89 10.03 22.24 0.22 -0.66 16 18 C -0.10 -1.32 9.96 22.41 0.22 -1.09 16 19 C 0.16 3.44 6.28 38.13 0.24 3.68 16 20 N -0.63 -10.49 5.35 -429.52 -2.30 -12.78 16 21 C 0.66 13.73 8.86 129.79 1.15 14.88 16 22 O -0.60 -18.12 14.82 19.80 0.29 -17.83 16 23 O -0.51 -6.20 13.48 -55.50 -0.75 -6.95 16 24 C -0.13 -4.05 7.65 22.49 0.17 -3.87 16 25 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.16 4.87 6.63 -2.39 -0.02 4.85 16 29 H 0.15 4.99 8.14 -2.39 -0.02 4.97 16 30 H 0.17 2.76 7.52 -2.91 -0.02 2.74 16 31 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.19 0.55 8.06 -2.91 -0.02 0.53 16 33 H 0.44 3.57 8.92 -92.71 -0.83 2.74 16 34 H 0.45 1.81 9.11 -74.06 -0.67 1.14 16 35 H 0.12 4.38 6.41 -2.91 -0.02 4.36 16 Total: -1.00 -89.24 323.53 -2.22 -91.46 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -0.34 Total: 9.60 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 3.54 Total: -37.69 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -2.01 Total: -68.87 kcal Atomic # 8 Polarization: -138.77 SS G_CDS: -5.15 Total: -143.92 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 105.53 SS G_CDS: -0.29 Total: 105.24 kcal Total: -89.24 -2.22 -91.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738428796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.637 kcal (2) G-P(sol) polarization free energy of solvation -89.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds