Wall clock time and date at job start Tue Mar 31 2020 11:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31292 * 1 3 3 Si 1.86803 * 119.99649 * 2 1 4 4 H 1.48507 * 109.46935 * 274.97897 * 3 2 1 5 5 H 1.48493 * 109.47294 * 34.97768 * 3 2 1 6 6 H 1.48493 * 109.47180 * 154.98202 * 3 2 1 7 7 C 1.38983 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99863 * 185.93682 * 7 2 1 9 9 N 1.37310 * 120.00248 * 5.93974 * 7 2 1 10 10 C 1.36500 * 126.07045 * 174.13174 * 9 7 2 11 11 C 1.35698 * 107.50625 * 180.02562 * 10 9 7 12 12 N 1.40521 * 126.08682 * 180.02562 * 11 10 9 13 13 C 1.34770 * 120.00292 * 180.02562 * 12 11 10 14 14 O 1.21604 * 120.00370 * 359.97438 * 13 12 11 15 15 C 1.47649 * 120.00282 * 179.97438 * 13 12 11 16 16 C 1.40798 * 119.46250 * 0.02562 * 15 13 12 17 17 C 1.35087 * 121.44348 * 179.97438 * 16 15 13 18 18 C 1.41950 * 120.26061 * 0.02562 * 17 16 15 19 19 N 1.32259 * 130.72288 * 180.02562 * 18 17 16 20 20 S 1.55514 * 109.49123 * 179.97438 * 19 18 17 21 21 N 1.55530 * 100.21749 * 359.97438 * 20 19 18 22 22 C 1.32472 * 109.37798 * 359.97438 * 21 20 19 23 23 C 1.37986 * 119.46578 * 179.97438 * 15 13 12 24 24 C 1.40665 * 107.82921 * 0.26378 * 11 10 9 25 25 N 1.30902 * 108.38785 * 359.55205 * 24 11 10 26 26 H 0.97000 * 120.00242 * 0.02562 * 1 2 3 27 27 H 1.07996 * 126.24286 * 0.04277 * 10 9 7 28 28 H 0.97002 * 119.99845 * 359.97438 * 12 11 10 29 29 H 1.08000 * 119.27569 * 0.02562 * 16 15 13 30 30 H 1.07997 * 119.87209 * 179.97438 * 17 16 15 31 31 H 1.08004 * 120.15564 * 359.97438 * 23 15 13 32 32 H 1.07998 * 125.80500 * 179.70449 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 2.3891 2.1072 -1.3949 5 1 1.5008 2.6200 0.8026 6 1 3.5930 1.4123 0.5921 7 6 2.0079 -1.2036 0.0005 8 1 3.0835 -1.2060 0.0973 9 7 1.3270 -2.3897 -0.1220 10 6 1.8865 -3.6282 -0.2489 11 6 0.8734 -4.5262 -0.3426 12 7 1.0110 -5.9173 -0.4852 13 6 -0.0845 -6.6980 -0.5676 14 8 -1.1921 -6.1986 -0.5180 15 6 0.0601 -8.1596 -0.7180 16 6 1.3479 -8.7261 -0.7736 17 6 1.5266 -10.0581 -0.9101 18 6 0.4059 -10.9245 -1.0018 19 7 0.3399 -12.2385 -1.1366 20 16 -1.1502 -12.6809 -1.1853 21 7 -1.8526 -11.3004 -1.0448 22 6 -0.9361 -10.3491 -0.9444 23 6 -1.0690 -8.9484 -0.8007 24 6 -0.3390 -3.8160 -0.2772 25 7 -0.0652 -2.5433 -0.1396 26 1 -0.4850 0.8400 -0.0004 27 1 2.9427 -3.8525 -0.2704 28 1 1.8946 -6.3157 -0.5251 29 1 2.2118 -8.0815 -0.7048 30 1 2.5260 -10.4654 -0.9503 31 1 -2.0498 -8.4984 -0.7552 32 1 -1.3276 -4.2476 -0.3290 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776704471.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:24 Heat of formation + Delta-G solvation = 136.124817 kcal Electronic energy + Delta-G solvation = -21778.500602 eV Core-core repulsion = 18254.634265 eV Total energy + Delta-G solvation = -3523.866337 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21064 -39.95781 -38.75282 -36.16406 -34.40764 -34.08026 -33.18791 -30.54993 -30.25092 -28.69450 -27.22723 -24.92181 -23.49027 -22.27168 -21.19904 -20.68974 -19.61113 -19.48943 -18.10783 -17.25726 -17.03420 -16.09679 -15.98379 -15.46775 -14.96874 -14.62985 -14.56481 -14.24561 -13.80886 -13.25247 -13.22167 -12.89802 -12.69126 -12.02227 -11.97949 -11.85537 -11.70656 -11.46499 -11.28682 -11.17963 -10.96269 -10.91497 -10.54045 -10.21754 -9.37448 -9.20114 -9.03050 -8.83231 -8.68417 -8.08287 -6.73222 -6.58429 -4.24897 -0.50113 0.84929 1.10259 1.45123 1.46867 2.71538 2.97014 3.04023 3.09673 3.45011 3.46033 3.79944 3.80110 3.84891 4.43117 4.51001 4.60361 4.69252 4.75557 4.97732 4.99359 5.06557 5.50768 5.72447 5.79267 5.97008 6.04271 6.22328 6.42746 6.53877 6.86297 6.92960 7.06874 7.20581 7.83575 8.10826 8.23873 8.58134 8.77553 9.35187 9.64151 10.37727 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.055295 B = 0.002326 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.253770 B =12036.976623 C =12528.626183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.141 5.141 10 C -0.082 4.082 11 C -0.062 4.062 12 N -0.612 5.612 13 C 0.539 3.461 14 O -0.528 6.528 15 C -0.095 4.095 16 C -0.070 4.070 17 C -0.071 4.071 18 C 0.089 3.911 19 N -0.599 5.599 20 S 0.798 5.202 21 N -0.584 5.584 22 C 0.072 3.928 23 C 0.000 4.000 24 C -0.029 4.029 25 N -0.261 5.261 26 H 0.275 0.725 27 H 0.147 0.853 28 H 0.397 0.603 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.157 0.843 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 -20.945 -2.145 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.091 4.909 10 C -0.233 4.233 11 C -0.168 4.168 12 N -0.254 5.254 13 C 0.325 3.675 14 O -0.406 6.406 15 C -0.105 4.105 16 C -0.095 4.095 17 C -0.096 4.096 18 C -0.070 4.070 19 N -0.450 5.450 20 S 0.845 5.155 21 N -0.437 5.437 22 C -0.086 4.086 23 C -0.026 4.026 24 C -0.205 4.205 25 N -0.092 5.092 26 H 0.086 0.914 27 H 0.164 0.836 28 H 0.232 0.768 29 H 0.160 0.840 30 H 0.162 0.838 31 H 0.174 0.826 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.124 -21.359 -2.191 21.500 hybrid contribution 2.029 1.203 0.048 2.359 sum 3.153 -20.156 -2.143 20.514 Atomic orbital electron populations 1.70219 1.06172 1.28058 1.34992 1.25652 0.95692 1.00314 0.95449 0.85810 0.79451 0.80016 0.78870 1.19625 1.20099 1.18764 1.19887 0.92171 0.80668 1.52790 0.86540 1.44565 1.04031 1.03739 1.38525 1.21265 0.96833 0.85762 1.19440 1.17230 0.94414 0.81371 1.23758 1.42368 1.08046 1.05353 1.69614 1.17784 0.84810 0.85262 0.79600 1.90704 1.25253 1.74207 1.50434 1.19819 0.93211 0.94080 1.03438 1.20844 0.96709 0.94766 0.97190 1.20085 0.96290 0.91276 1.01924 1.21418 0.95825 0.87366 1.02348 1.72170 1.28223 1.17391 1.27208 1.78532 0.84442 1.11927 1.40647 1.72265 1.37953 1.07681 1.25762 1.21179 0.87413 0.95588 1.04395 1.20655 1.00328 0.87102 0.94491 1.24147 0.98052 0.90899 1.07394 1.78266 0.90277 1.15129 1.25554 0.91413 0.83573 0.76840 0.83991 0.83763 0.82553 0.80597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.24 11.84 55.49 0.66 -20.58 16 2 C 0.05 1.18 5.50 -17.51 -0.10 1.08 16 3 Si 0.93 18.65 29.56 -169.99 -5.02 13.62 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.32 -8.38 10.24 -14.82 -0.15 -8.53 16 8 H 0.12 2.69 7.84 -52.49 -0.41 2.28 16 9 N -0.14 -3.80 3.74 -11.41 -0.04 -3.84 16 10 C -0.08 -1.86 11.49 -16.38 -0.19 -2.05 16 11 C -0.06 -1.38 6.90 -83.86 -0.58 -1.96 16 12 N -0.61 -10.26 5.41 -10.91 -0.06 -10.32 16 13 C 0.54 9.13 7.73 -12.42 -0.10 9.04 16 14 O -0.53 -11.00 13.40 5.27 0.07 -10.93 16 15 C -0.10 -1.23 5.85 -105.18 -0.62 -1.85 16 16 C -0.07 -0.67 9.39 -39.73 -0.37 -1.05 16 17 C -0.07 -0.67 10.06 -39.28 -0.39 -1.06 16 18 C 0.09 1.02 7.16 -83.10 -0.59 0.43 16 19 N -0.60 -6.42 11.43 25.70 0.29 -6.12 16 20 S 0.80 6.60 23.60 -107.50 -2.54 4.06 16 21 N -0.58 -6.87 11.45 25.64 0.29 -6.58 16 22 C 0.07 0.90 7.15 -83.21 -0.59 0.31 16 23 C 0.00 0.00 9.65 -38.46 -0.37 -0.37 16 24 C -0.03 -0.76 10.85 -17.03 -0.18 -0.94 16 25 N -0.26 -7.50 10.42 30.80 0.32 -7.18 16 26 H 0.28 6.95 8.31 -40.82 -0.34 6.62 16 27 H 0.15 2.71 8.06 -52.49 -0.42 2.29 16 28 H 0.40 4.87 6.76 -40.82 -0.28 4.60 16 29 H 0.14 0.96 6.29 -52.49 -0.33 0.63 16 30 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.16 2.14 7.57 -52.48 -0.40 1.75 16 32 H 0.18 4.50 5.91 -52.49 -0.31 4.19 16 LS Contribution 302.90 15.07 4.56 4.56 Total: -1.00 -34.55 302.90 -7.41 -41.96 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -1.71 Total: 8.31 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -4.24 Total: -6.95 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 1.46 Total: -54.63 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.62 kcal Atomic # 16 Polarization: 6.60 SS G_CDS: -2.54 Total: 4.06 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.55 -7.41 -41.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776704471.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.080 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds