Wall clock time and date at job start Tue Mar 31 2020 10:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99995 * 2 1 4 4 H 1.48496 * 109.47139 * 270.00188 * 3 2 1 5 5 H 1.48502 * 109.47156 * 29.99930 * 3 2 1 6 6 H 1.48499 * 109.47192 * 149.99524 * 3 2 1 7 7 C 1.37879 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99482 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47038 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47094 * 179.97438 * 10 9 7 12 12 S 1.65597 * 119.99926 * 165.27799 * 11 10 9 13 13 O 1.42096 * 106.40195 * 178.26439 * 12 11 10 14 14 O 1.42108 * 106.40105 * 311.18495 * 12 11 10 15 15 C 1.76199 * 107.22117 * 64.72196 * 12 11 10 16 16 C 1.32578 * 120.00348 * 114.99893 * 15 12 11 17 17 C 1.47795 * 120.00388 * 180.02562 * 16 15 12 18 18 C 1.39538 * 120.14526 * 359.72162 * 17 16 15 19 19 C 1.37959 * 119.86567 * 179.74754 * 18 17 16 20 20 C 1.38375 * 120.16628 * 0.53213 * 19 18 17 21 21 C 1.38292 * 120.30502 * 359.74493 * 20 19 18 22 22 C 1.38129 * 120.12596 * 359.97438 * 21 20 19 23 23 Cl 1.73591 * 120.08587 * 179.97438 * 22 21 20 24 24 H 0.96996 * 120.00150 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47449 * 59.99680 * 9 7 2 26 26 H 1.09002 * 109.46981 * 299.98904 * 9 7 2 27 27 H 1.09007 * 109.47007 * 59.99663 * 10 9 7 28 28 H 1.08995 * 109.47080 * 299.99907 * 10 9 7 29 29 H 0.97001 * 119.99790 * 344.99588 * 11 10 9 30 30 H 1.08004 * 120.00397 * 295.00224 * 15 12 11 31 31 H 1.08004 * 119.99254 * 0.02562 * 16 15 12 32 32 H 1.08005 * 120.07141 * 0.02562 * 18 17 16 33 33 H 1.08000 * 119.91362 * 180.26001 * 19 18 17 34 34 H 1.08008 * 119.84326 * 179.76816 * 20 19 18 35 35 H 1.07994 * 119.93707 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9309 0.0012 12 16 2.2999 -6.3415 -0.3632 13 8 1.3392 -7.3810 -0.2378 14 8 3.0291 -6.0971 -1.5581 15 6 3.4954 -6.6136 0.9023 16 6 3.3811 -7.6600 1.7083 17 6 4.3836 -7.8880 2.7701 18 6 5.4548 -7.0070 2.9233 19 6 6.3843 -7.2224 3.9197 20 6 6.2627 -8.3153 4.7597 21 6 5.2070 -9.1960 4.6105 22 6 4.2661 -8.9890 3.6207 23 17 2.9417 -10.0956 3.4339 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5568 0.8904 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 0.5677 -4.9451 0.2190 30 1 4.3213 -5.9280 1.0214 31 1 2.5553 -8.3458 1.5890 32 1 5.5536 -6.1557 2.2660 33 1 7.2114 -6.5387 4.0416 34 1 6.9955 -8.4810 5.5356 35 1 5.1177 -10.0468 5.2696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784371650.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:41 Heat of formation + Delta-G solvation = -48.746680 kcal Electronic energy + Delta-G solvation = -20588.325992 eV Core-core repulsion = 17125.257768 eV Total energy + Delta-G solvation = -3463.068224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.83673 -37.00022 -36.87019 -35.64774 -35.40517 -34.83607 -32.75570 -31.24307 -30.03911 -29.14810 -24.51109 -24.41230 -23.03588 -21.28158 -20.83427 -18.86730 -18.07977 -17.27930 -16.85722 -16.32365 -15.91672 -15.58023 -15.38740 -14.55950 -14.37848 -14.27684 -14.12004 -14.01092 -13.73579 -12.91076 -12.56640 -12.26740 -11.99643 -11.90647 -11.83893 -11.74057 -11.69609 -11.31614 -11.30081 -11.19418 -11.08932 -10.79798 -10.64523 -10.45925 -9.60647 -9.32248 -9.29325 -8.97869 -8.87434 -8.42644 -6.09666 -4.13316 0.05201 0.67433 0.74978 1.68327 1.71558 3.22656 3.28186 3.33683 3.35612 3.39149 3.83696 4.21232 4.26347 4.39415 4.46164 4.68492 4.78759 4.80977 4.95097 5.13544 5.27163 5.40748 5.56032 5.69779 5.74399 5.76889 5.93177 6.14692 6.16863 6.28969 6.44967 6.69998 7.39716 7.54361 7.63553 7.88780 8.26092 8.92552 9.51387 11.01739 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015570 B = 0.003107 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.894162 B = 9010.710943 C =10070.946377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.017 3.983 10 C 0.116 3.884 11 N -1.110 6.110 12 S 2.684 3.316 13 O -0.974 6.974 14 O -0.959 6.959 15 C -0.729 4.729 16 C 0.035 3.965 17 C -0.078 4.078 18 C -0.079 4.079 19 C -0.118 4.118 20 C -0.093 4.093 21 C -0.116 4.116 22 C -0.014 4.014 23 Cl -0.056 7.056 24 H 0.262 0.738 25 H 0.027 0.973 26 H 0.024 0.976 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.418 0.582 30 H 0.163 0.837 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.970 -18.681 10.198 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.022 4.022 10 C -0.009 4.009 11 N -0.872 5.872 12 S 2.773 3.227 13 O -0.964 6.964 14 O -0.949 6.949 15 C -0.834 4.834 16 C 0.015 3.985 17 C -0.080 4.080 18 C -0.097 4.097 19 C -0.136 4.136 20 C -0.111 4.111 21 C -0.134 4.134 22 C -0.041 4.041 23 Cl -0.027 7.027 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.253 0.747 30 H 0.180 0.820 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.768 -19.183 9.418 23.930 hybrid contribution 0.386 1.110 0.855 1.454 sum 11.154 -18.073 10.273 23.592 Atomic orbital electron populations 1.69958 1.06094 1.26895 1.50139 1.25008 0.94887 0.99397 0.95017 0.86525 0.79740 0.83104 0.78218 1.20532 1.21213 1.19800 1.21085 0.93187 0.90506 1.51628 0.92245 1.19290 0.94071 0.90504 0.98287 1.21689 0.96163 0.82638 1.00367 1.55465 1.21498 1.22007 1.88187 1.02017 0.73638 0.72620 0.74442 1.93559 1.60166 1.55501 1.87179 1.93603 1.73663 1.84989 1.42628 1.34164 1.21716 1.07570 1.19982 1.22021 0.94400 0.93987 0.88091 1.19042 0.97004 0.95180 0.96803 1.21493 0.92411 0.98240 0.97516 1.21292 0.99383 0.97932 0.95023 1.21309 0.97155 0.93790 0.98882 1.21055 0.93961 1.00835 0.97583 1.21174 0.92008 0.92810 0.98065 1.98398 1.46100 1.61292 1.96928 0.92805 0.95504 0.95732 0.92969 0.91176 0.74745 0.81958 0.83391 0.84107 0.84649 0.84637 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.52 -14.10 9.11 -34.44 -0.31 -14.41 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.42 5.12 -27.88 -0.14 0.27 16 10 C 0.12 2.22 6.16 -4.04 -0.02 2.20 16 11 N -1.11 -18.10 6.00 -10.61 -0.06 -18.16 16 12 S 2.68 41.38 5.89 -107.50 -0.63 40.75 16 13 O -0.97 -16.31 16.89 -57.17 -0.97 -17.28 16 14 O -0.96 -17.83 17.50 -57.17 -1.00 -18.83 16 15 C -0.73 -9.39 9.71 28.83 0.28 -9.11 16 16 C 0.03 0.43 9.02 -37.58 -0.34 0.09 16 17 C -0.08 -0.87 5.87 -104.99 -0.62 -1.48 16 18 C -0.08 -0.76 9.40 -39.20 -0.37 -1.12 16 19 C -0.12 -0.89 10.03 -39.63 -0.40 -1.29 16 20 C -0.09 -0.63 10.04 -39.51 -0.40 -1.03 16 21 C -0.12 -0.90 9.82 -39.60 -0.39 -1.29 16 22 C -0.01 -0.14 6.35 -39.10 -0.25 -0.39 16 23 Cl -0.06 -0.56 27.42 -51.86 -1.42 -1.99 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.36 7.76 -51.93 -0.40 0.95 16 29 H 0.42 6.33 8.65 -34.47 -0.30 6.03 16 30 H 0.16 1.82 6.04 -52.48 -0.32 1.50 16 31 H 0.15 1.82 6.14 -52.48 -0.32 1.50 16 32 H 0.14 1.22 6.17 -52.48 -0.32 0.90 16 33 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 333.34 15.07 5.02 5.02 Total: -1.00 -33.16 333.34 -10.14 -43.30 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.74 Total: 2.46 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -3.05 Total: -26.03 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.67 Total: -43.31 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -1.97 Total: -36.11 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 41.38 SS G_CDS: -0.63 Total: 40.75 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.42 Total: -1.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.16 -10.14 -43.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784371650.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.445 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds