Wall clock time and date at job start Tue Mar 31 2020 10:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99995 * 2 1 4 4 H 1.48496 * 109.47139 * 270.00188 * 3 2 1 5 5 H 1.48502 * 109.47156 * 29.99930 * 3 2 1 6 6 H 1.48499 * 109.47192 * 149.99524 * 3 2 1 7 7 C 1.37879 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99482 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47038 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47094 * 179.97438 * 10 9 7 12 12 S 1.65597 * 119.99926 * 165.27799 * 11 10 9 13 13 O 1.42096 * 106.40195 * 178.26439 * 12 11 10 14 14 O 1.42108 * 106.40105 * 311.18495 * 12 11 10 15 15 C 1.76199 * 107.22117 * 64.72196 * 12 11 10 16 16 C 1.32578 * 120.00348 * 114.99893 * 15 12 11 17 17 C 1.47795 * 120.00388 * 180.02562 * 16 15 12 18 18 C 1.39538 * 120.14526 * 359.72162 * 17 16 15 19 19 C 1.37959 * 119.86567 * 179.74754 * 18 17 16 20 20 C 1.38375 * 120.16628 * 0.53213 * 19 18 17 21 21 C 1.38292 * 120.30502 * 359.74493 * 20 19 18 22 22 C 1.38129 * 120.12596 * 359.97438 * 21 20 19 23 23 Cl 1.73591 * 120.08587 * 179.97438 * 22 21 20 24 24 H 0.96996 * 120.00150 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47449 * 59.99680 * 9 7 2 26 26 H 1.09002 * 109.46981 * 299.98904 * 9 7 2 27 27 H 1.09007 * 109.47007 * 59.99663 * 10 9 7 28 28 H 1.08995 * 109.47080 * 299.99907 * 10 9 7 29 29 H 0.97001 * 119.99790 * 344.99588 * 11 10 9 30 30 H 1.08004 * 120.00397 * 295.00224 * 15 12 11 31 31 H 1.08004 * 119.99254 * 0.02562 * 16 15 12 32 32 H 1.08005 * 120.07141 * 0.02562 * 18 17 16 33 33 H 1.08000 * 119.91362 * 180.26001 * 19 18 17 34 34 H 1.08008 * 119.84326 * 179.76816 * 20 19 18 35 35 H 1.07994 * 119.93707 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9309 0.0012 12 16 2.2999 -6.3415 -0.3632 13 8 1.3392 -7.3810 -0.2378 14 8 3.0291 -6.0971 -1.5581 15 6 3.4954 -6.6136 0.9023 16 6 3.3811 -7.6600 1.7083 17 6 4.3836 -7.8880 2.7701 18 6 5.4548 -7.0070 2.9233 19 6 6.3843 -7.2224 3.9197 20 6 6.2627 -8.3153 4.7597 21 6 5.2070 -9.1960 4.6105 22 6 4.2661 -8.9890 3.6207 23 17 2.9417 -10.0956 3.4339 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5568 0.8904 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 0.5677 -4.9451 0.2190 30 1 4.3213 -5.9280 1.0214 31 1 2.5553 -8.3458 1.5890 32 1 5.5536 -6.1557 2.2660 33 1 7.2114 -6.5387 4.0416 34 1 6.9955 -8.4810 5.5356 35 1 5.1177 -10.0468 5.2696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784371650.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:40 Heat of formation + Delta-G solvation = -70.977924 kcal Electronic energy + Delta-G solvation = -20589.290011 eV Core-core repulsion = 17125.257768 eV Total energy + Delta-G solvation = -3464.032243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49808 -38.34383 -37.59423 -37.02660 -36.96810 -35.69648 -34.71175 -31.86601 -30.98858 -30.80356 -26.40212 -25.20262 -23.69830 -22.98371 -21.80531 -20.11694 -19.07321 -18.54115 -18.07477 -17.87008 -17.07638 -16.53144 -16.46311 -16.21677 -15.53100 -15.46984 -14.92850 -14.92037 -14.82472 -14.39750 -13.82410 -13.38580 -13.29863 -13.24420 -13.15318 -12.97195 -12.87528 -12.72839 -12.46319 -12.42300 -12.31942 -12.11018 -11.98224 -11.73039 -11.47789 -11.28963 -10.60455 -10.30025 -9.96543 -9.65559 -8.18935 -6.29647 -0.80467 -0.52892 0.12653 0.88865 0.97306 1.45203 1.46260 1.56825 2.07723 2.44996 2.58975 2.66755 3.16230 3.30695 3.50010 3.63836 3.82006 4.11384 4.20239 4.22907 4.26197 4.52123 4.57005 4.65480 4.79133 4.86631 4.91450 5.00186 5.14922 5.33847 5.35461 5.52155 5.65698 5.70962 5.83136 6.04215 6.24421 6.86587 7.39737 8.93195 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015570 B = 0.003107 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.894162 B = 9010.710943 C =10070.946377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.018 3.982 10 C 0.128 3.872 11 N -1.112 6.112 12 S 2.701 3.299 13 O -0.990 6.990 14 O -0.993 6.993 15 C -0.736 4.736 16 C 0.046 3.954 17 C -0.108 4.108 18 C -0.089 4.089 19 C -0.119 4.119 20 C -0.080 4.080 21 C -0.118 4.118 22 C -0.026 4.026 23 Cl -0.066 7.066 24 H 0.263 0.737 25 H -0.001 1.001 26 H 0.009 0.991 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.421 0.579 30 H 0.181 0.819 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.171 0.829 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.705 -18.871 12.100 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.581 4.581 8 H 0.089 0.911 9 C -0.021 4.021 10 C 0.003 3.997 11 N -0.872 5.872 12 S 2.794 3.206 13 O -0.981 6.981 14 O -0.983 6.983 15 C -0.845 4.845 16 C 0.026 3.974 17 C -0.110 4.110 18 C -0.107 4.107 19 C -0.137 4.137 20 C -0.098 4.098 21 C -0.137 4.137 22 C -0.052 4.052 23 Cl -0.037 7.037 24 H 0.072 0.928 25 H 0.017 0.983 26 H 0.027 0.973 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.257 0.743 30 H 0.199 0.801 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.180 0.820 34 H 0.188 0.812 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 13.479 -19.375 11.289 26.163 hybrid contribution -0.404 1.036 0.386 1.178 sum 13.075 -18.339 11.675 25.369 Atomic orbital electron populations 1.70093 1.07821 1.27837 1.51446 1.25951 0.95734 1.03365 0.94685 0.85432 0.78823 0.78359 0.78343 1.20159 1.21082 1.18204 1.21592 0.94025 0.91659 1.50852 0.91124 1.19172 0.94552 0.92171 0.96158 1.21392 0.95006 0.81838 1.01474 1.55328 1.21927 1.21523 1.88466 1.01181 0.73368 0.71708 0.74298 1.93531 1.61264 1.55679 1.87580 1.93555 1.74184 1.85295 1.45282 1.33654 1.21800 1.09153 1.19895 1.22173 0.94348 0.93049 0.87841 1.19069 0.97773 0.96761 0.97394 1.21718 0.92460 0.98165 0.98365 1.21664 0.99384 0.98528 0.94102 1.21774 0.96830 0.92468 0.98719 1.21399 0.93524 1.01718 0.97041 1.21381 0.92436 0.92605 0.98812 1.98393 1.46748 1.61543 1.97019 0.92781 0.98272 0.97279 0.90549 0.91375 0.74326 0.80129 0.83914 0.83632 0.82034 0.81162 0.82323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.04 13.29 21.45 0.28 -54.76 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 42.63 29.54 68.60 2.03 44.66 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.54 -29.18 9.11 25.60 0.23 -28.94 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.02 0.90 5.12 29.85 0.15 1.05 16 10 C 0.13 4.90 6.16 86.38 0.53 5.43 16 11 N -1.11 -36.70 6.00 -187.48 -1.12 -37.82 16 12 S 2.70 84.00 5.89 -56.49 -0.33 83.67 16 13 O -0.99 -33.68 16.89 -128.00 -2.16 -35.84 16 14 O -0.99 -37.36 17.50 -128.00 -2.24 -39.60 16 15 C -0.74 -18.47 9.71 66.67 0.65 -17.83 16 16 C 0.05 1.12 9.02 23.65 0.21 1.33 16 17 C -0.11 -2.24 5.87 -20.10 -0.12 -2.36 16 18 C -0.09 -1.51 9.40 22.52 0.21 -1.30 16 19 C -0.12 -1.37 10.03 22.24 0.22 -1.15 16 20 C -0.08 -0.76 10.04 22.32 0.22 -0.53 16 21 C -0.12 -1.50 9.82 22.26 0.22 -1.28 16 22 C -0.03 -0.47 6.35 22.58 0.14 -0.33 16 23 Cl -0.07 -1.28 27.42 -2.72 -0.07 -1.36 16 24 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 28 H 0.07 2.63 7.76 -2.39 -0.02 2.61 16 29 H 0.42 13.16 8.65 -96.74 -0.84 12.33 16 30 H 0.18 3.80 6.04 -2.91 -0.02 3.78 16 31 H 0.14 3.53 6.14 -2.91 -0.02 3.51 16 32 H 0.15 2.22 6.17 -2.91 -0.02 2.20 16 33 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 34 H 0.17 0.44 8.06 -2.91 -0.02 0.41 16 35 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -71.78 333.34 -0.19 -71.97 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.29 Total: 14.48 kcal Atomic # 6 Polarization: -48.55 SS G_CDS: 3.14 Total: -45.40 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -0.84 Total: -92.58 kcal Atomic # 8 Polarization: -71.03 SS G_CDS: -4.40 Total: -75.44 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 84.00 SS G_CDS: -0.33 Total: 83.67 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.07 Total: -1.36 kcal Total: -71.78 -0.19 -71.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784371650.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.996 kcal (2) G-P(sol) polarization free energy of solvation -71.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds