Wall clock time and date at job start Tue Mar 31 2020 10:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00170 * 2 1 4 4 H 1.48497 * 109.46990 * 239.99898 * 3 2 1 5 5 H 1.48498 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47275 * 119.99876 * 3 2 1 7 7 C 1.37875 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47331 * 179.97438 * 9 7 2 11 11 N 1.46493 * 109.47065 * 180.02562 * 10 9 7 12 12 S 1.65604 * 119.99866 * 165.00096 * 11 10 9 13 13 O 1.42098 * 106.40125 * 311.46358 * 12 11 10 14 14 O 1.42097 * 106.40430 * 178.54135 * 12 11 10 15 15 C 1.76197 * 107.21790 * 65.00108 * 12 11 10 16 16 C 1.32584 * 120.00009 * 117.80304 * 15 12 11 17 17 C 1.47798 * 119.99777 * 17.47986 * 16 15 12 18 18 C 1.39545 * 120.15013 * 46.24994 * 17 16 15 19 19 C 1.37945 * 119.86904 * 179.74958 * 18 17 16 20 20 C 1.38378 * 120.16934 * 0.53223 * 19 18 17 21 21 C 1.38295 * 120.29998 * 359.74267 * 20 19 18 22 22 C 1.38120 * 120.12598 * 359.97438 * 21 20 19 23 23 Cl 1.73603 * 120.08472 * 180.02562 * 22 21 20 24 24 H 0.97000 * 120.00381 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47122 * 60.00530 * 9 7 2 26 26 H 1.08998 * 109.47206 * 300.00202 * 9 7 2 27 27 H 1.09006 * 109.46460 * 60.00277 * 10 9 7 28 28 H 1.08997 * 109.46801 * 300.00561 * 10 9 7 29 29 H 0.97002 * 120.00404 * 345.00952 * 11 10 9 30 30 H 1.08002 * 120.00269 * 297.81376 * 15 12 11 31 31 H 1.08001 * 120.00356 * 197.46923 * 16 15 12 32 32 H 1.08004 * 120.06171 * 0.02562 * 18 17 16 33 33 H 1.08005 * 119.91885 * 180.25690 * 19 18 17 34 34 H 1.08004 * 119.85192 * 179.76806 * 20 19 18 35 35 H 1.07999 * 119.93219 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 7 1.5127 -4.9308 0.0020 12 16 2.2982 -6.3406 -0.3693 13 8 3.0274 -6.0912 -1.5631 14 8 1.3364 -7.3796 -0.2488 15 6 3.4935 -6.6201 0.8946 16 6 3.4094 -7.6998 1.6595 17 6 2.5802 -8.8459 1.2314 18 6 2.6654 -9.3225 -0.0773 19 6 1.8926 -10.3959 -0.4692 20 6 1.0257 -10.9933 0.4287 21 6 0.9314 -10.5230 1.7258 22 6 1.7037 -9.4528 2.1330 23 17 1.5850 -8.8637 3.7618 24 1 -0.4851 0.8400 -0.0004 25 1 0.6240 -2.5575 -0.8881 26 1 0.6246 -2.5563 0.8919 27 1 2.8725 -3.6039 0.8910 28 1 2.8712 -3.6047 -0.8890 29 1 0.5675 -4.9451 0.2197 30 1 4.2946 -5.9119 1.0465 31 1 3.9470 -7.7419 2.5953 32 1 3.3385 -8.8548 -0.7807 33 1 1.9610 -10.7681 -1.4808 34 1 0.4203 -11.8310 0.1153 35 1 0.2525 -10.9935 2.4216 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784372037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:43 Heat of formation + Delta-G solvation = -33.265345 kcal Electronic energy + Delta-G solvation = -21290.190569 eV Core-core repulsion = 17827.793666 eV Total energy + Delta-G solvation = -3462.396903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.68704 -36.96505 -36.63581 -35.64795 -35.40948 -34.65232 -32.75634 -30.96398 -29.82242 -29.13380 -24.51455 -24.05973 -22.79220 -21.35606 -20.98363 -18.91171 -18.02393 -16.98231 -16.57756 -16.31236 -15.79117 -15.59298 -15.08382 -14.68656 -14.53006 -14.11856 -13.96146 -13.78169 -13.59796 -13.21686 -12.56094 -12.17679 -11.91763 -11.82014 -11.76636 -11.72680 -11.41830 -11.30418 -11.15767 -11.09351 -10.89266 -10.64168 -10.46888 -10.36542 -9.59903 -9.30232 -8.94475 -8.90731 -8.68888 -8.41885 -6.08844 -4.12647 0.31649 0.76708 1.08206 1.58779 1.89536 3.30165 3.30468 3.34922 3.38089 3.46487 3.92021 4.18184 4.40147 4.51961 4.66667 4.72972 4.97091 5.06431 5.25999 5.27822 5.39491 5.57893 5.65917 5.74904 5.80097 6.04894 6.06959 6.15845 6.20813 6.44854 6.56998 6.69921 7.39282 7.54444 7.63489 7.89272 8.26722 8.92911 9.52010 11.02544 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.023204 B = 0.003203 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.423433 B = 8740.387203 C = 9243.926954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.018 3.982 10 C 0.115 3.885 11 N -1.108 6.108 12 S 2.671 3.329 13 O -0.966 6.966 14 O -0.959 6.959 15 C -0.737 4.737 16 C 0.050 3.950 17 C -0.080 4.080 18 C -0.055 4.055 19 C -0.110 4.110 20 C -0.091 4.091 21 C -0.116 4.116 22 C -0.006 4.006 23 Cl -0.068 7.068 24 H 0.263 0.737 25 H 0.026 0.974 26 H 0.024 0.976 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.417 0.583 30 H 0.168 0.832 31 H 0.137 0.863 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 -22.582 4.227 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.021 4.021 10 C -0.010 4.010 11 N -0.870 5.870 12 S 2.760 3.240 13 O -0.956 6.956 14 O -0.949 6.949 15 C -0.842 4.842 16 C 0.030 3.970 17 C -0.081 4.081 18 C -0.074 4.074 19 C -0.128 4.128 20 C -0.109 4.109 21 C -0.134 4.134 22 C -0.032 4.032 23 Cl -0.039 7.039 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.253 0.747 30 H 0.186 0.814 31 H 0.155 0.845 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.996 -22.906 3.624 23.533 hybrid contribution 0.447 1.435 1.052 1.834 sum 4.443 -21.471 4.677 22.419 Atomic orbital electron populations 1.69943 1.06104 1.27020 1.50038 1.25001 0.94890 0.99391 0.94979 0.86583 0.79532 0.82726 0.78733 1.20059 1.21244 1.20153 1.21052 0.93182 0.90505 1.51791 0.92262 1.19285 0.94043 0.90482 0.98271 1.21705 0.96200 0.82688 1.00384 1.55428 1.21436 1.21964 1.88138 1.02426 0.74339 0.72655 0.74544 1.93587 1.73662 1.85035 1.43296 1.93704 1.60736 1.53749 1.86668 1.33991 1.19102 1.07983 1.23142 1.21710 0.90076 0.89540 0.95686 1.18927 0.98155 0.97035 0.93988 1.21075 0.97817 0.95708 0.92786 1.21028 0.95900 0.95914 0.99959 1.21163 0.97612 0.99529 0.92586 1.20919 0.99471 0.95923 0.97121 1.20837 0.99390 0.97032 0.85962 1.98376 1.97211 1.88123 1.20144 0.92739 0.95518 0.95732 0.92936 0.91226 0.74746 0.81408 0.84502 0.85894 0.85000 0.84976 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.28 55.43 0.74 -25.36 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.44 5.11 -27.88 -0.14 0.30 16 10 C 0.11 2.28 6.16 -4.04 -0.02 2.26 16 11 N -1.11 -18.77 6.00 -10.61 -0.06 -18.84 16 12 S 2.67 41.79 4.90 -107.50 -0.53 41.26 16 13 O -0.97 -18.05 17.49 -57.17 -1.00 -19.05 16 14 O -0.96 -15.26 13.08 -57.17 -0.75 -16.01 16 15 C -0.74 -9.62 10.08 28.83 0.29 -9.33 16 16 C 0.05 0.59 8.81 -37.58 -0.33 0.26 16 17 C -0.08 -0.99 3.90 -104.98 -0.41 -1.40 16 18 C -0.05 -0.66 6.53 -39.20 -0.26 -0.92 16 19 C -0.11 -1.12 10.03 -39.64 -0.40 -1.52 16 20 C -0.09 -0.83 10.04 -39.51 -0.40 -1.23 16 21 C -0.12 -1.17 9.82 -39.60 -0.39 -1.55 16 22 C -0.01 -0.07 6.35 -39.11 -0.25 -0.31 16 23 Cl -0.07 -0.75 27.99 -51.86 -1.45 -2.20 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.40 7.75 -51.93 -0.40 0.99 16 29 H 0.42 6.61 8.65 -34.47 -0.30 6.31 16 30 H 0.17 1.95 8.06 -52.49 -0.42 1.52 16 31 H 0.14 1.31 7.99 -52.49 -0.42 0.89 16 32 H 0.12 1.38 7.46 -52.48 -0.39 0.99 16 33 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -32.70 329.56 -9.84 -42.53 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.01 Total: 3.16 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -2.72 Total: -26.55 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.67 Total: -44.20 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -1.75 Total: -35.06 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 41.79 SS G_CDS: -0.53 Total: 41.26 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.45 Total: -2.20 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.70 -9.84 -42.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784372037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.267 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds