Wall clock time and date at job start Tue Mar 31 2020 10:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00170 * 2 1 4 4 H 1.48497 * 109.46990 * 239.99898 * 3 2 1 5 5 H 1.48498 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47275 * 119.99876 * 3 2 1 7 7 C 1.37875 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47331 * 179.97438 * 9 7 2 11 11 N 1.46493 * 109.47065 * 180.02562 * 10 9 7 12 12 S 1.65604 * 119.99866 * 165.00096 * 11 10 9 13 13 O 1.42098 * 106.40125 * 311.46358 * 12 11 10 14 14 O 1.42097 * 106.40430 * 178.54135 * 12 11 10 15 15 C 1.76197 * 107.21790 * 65.00108 * 12 11 10 16 16 C 1.32584 * 120.00009 * 117.80304 * 15 12 11 17 17 C 1.47798 * 119.99777 * 17.47986 * 16 15 12 18 18 C 1.39545 * 120.15013 * 46.24994 * 17 16 15 19 19 C 1.37945 * 119.86904 * 179.74958 * 18 17 16 20 20 C 1.38378 * 120.16934 * 0.53223 * 19 18 17 21 21 C 1.38295 * 120.29998 * 359.74267 * 20 19 18 22 22 C 1.38120 * 120.12598 * 359.97438 * 21 20 19 23 23 Cl 1.73603 * 120.08472 * 180.02562 * 22 21 20 24 24 H 0.97000 * 120.00381 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47122 * 60.00530 * 9 7 2 26 26 H 1.08998 * 109.47206 * 300.00202 * 9 7 2 27 27 H 1.09006 * 109.46460 * 60.00277 * 10 9 7 28 28 H 1.08997 * 109.46801 * 300.00561 * 10 9 7 29 29 H 0.97002 * 120.00404 * 345.00952 * 11 10 9 30 30 H 1.08002 * 120.00269 * 297.81376 * 15 12 11 31 31 H 1.08001 * 120.00356 * 197.46923 * 16 15 12 32 32 H 1.08004 * 120.06171 * 0.02562 * 18 17 16 33 33 H 1.08005 * 119.91885 * 180.25690 * 19 18 17 34 34 H 1.08004 * 119.85192 * 179.76806 * 20 19 18 35 35 H 1.07999 * 119.93219 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 7 1.5127 -4.9308 0.0020 12 16 2.2982 -6.3406 -0.3693 13 8 3.0274 -6.0912 -1.5631 14 8 1.3364 -7.3796 -0.2488 15 6 3.4935 -6.6201 0.8946 16 6 3.4094 -7.6998 1.6595 17 6 2.5802 -8.8459 1.2314 18 6 2.6654 -9.3225 -0.0773 19 6 1.8926 -10.3959 -0.4692 20 6 1.0257 -10.9933 0.4287 21 6 0.9314 -10.5230 1.7258 22 6 1.7037 -9.4528 2.1330 23 17 1.5850 -8.8637 3.7618 24 1 -0.4851 0.8400 -0.0004 25 1 0.6240 -2.5575 -0.8881 26 1 0.6246 -2.5563 0.8919 27 1 2.8725 -3.6039 0.8910 28 1 2.8712 -3.6047 -0.8890 29 1 0.5675 -4.9451 0.2197 30 1 4.2946 -5.9119 1.0465 31 1 3.9470 -7.7419 2.5953 32 1 3.3385 -8.8548 -0.7807 33 1 1.9610 -10.7681 -1.4808 34 1 0.4203 -11.8310 0.1153 35 1 0.2525 -10.9935 2.4216 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784372037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:43 Heat of formation + Delta-G solvation = -54.739996 kcal Electronic energy + Delta-G solvation = -21291.121780 eV Core-core repulsion = 17827.793666 eV Total energy + Delta-G solvation = -3463.328114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.51590 -38.21690 -37.50983 -37.03274 -36.92057 -35.58907 -34.73632 -31.76486 -31.02411 -30.65398 -26.42920 -24.96505 -23.60581 -23.01729 -22.11109 -20.16745 -19.12820 -18.43174 -18.00823 -17.48337 -16.98188 -16.70082 -16.46597 -15.98299 -15.77481 -15.43472 -15.24286 -14.87912 -14.53754 -14.36091 -14.10195 -13.37681 -13.27272 -13.26042 -13.08779 -12.96374 -12.77703 -12.60428 -12.47425 -12.35867 -12.32261 -12.02773 -11.82050 -11.50494 -11.37024 -11.29134 -10.61556 -10.33020 -9.73845 -9.55101 -8.20506 -6.31675 -0.73537 -0.30897 0.26652 0.68984 1.05055 1.44015 1.46767 1.54344 2.05565 2.43752 2.61931 2.74920 3.14313 3.30928 3.46294 3.71372 3.99233 4.17151 4.20262 4.34229 4.38104 4.51967 4.61519 4.71757 4.81068 4.82588 4.93872 4.96122 5.19398 5.28626 5.43194 5.48992 5.62032 5.80360 5.82293 6.01139 6.21997 6.83859 7.37744 8.91436 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.023204 B = 0.003203 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.423433 B = 8740.387203 C = 9243.926954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.069 0.931 9 C 0.019 3.981 10 C 0.127 3.873 11 N -1.112 6.112 12 S 2.683 3.317 13 O -1.001 7.001 14 O -0.962 6.962 15 C -0.747 4.747 16 C 0.067 3.933 17 C -0.105 4.105 18 C -0.078 4.078 19 C -0.118 4.118 20 C -0.086 4.086 21 C -0.121 4.121 22 C -0.020 4.020 23 Cl -0.067 7.067 24 H 0.264 0.736 25 H 0.000 1.000 26 H 0.009 0.991 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.421 0.579 30 H 0.184 0.816 31 H 0.163 0.837 32 H 0.122 0.878 33 H 0.155 0.845 34 H 0.167 0.833 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.952 -23.678 4.969 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.088 0.912 9 C -0.019 4.019 10 C 0.001 3.999 11 N -0.873 5.873 12 S 2.776 3.224 13 O -0.991 6.991 14 O -0.952 6.952 15 C -0.856 4.856 16 C 0.047 3.953 17 C -0.107 4.107 18 C -0.097 4.097 19 C -0.136 4.136 20 C -0.103 4.103 21 C -0.140 4.140 22 C -0.046 4.046 23 Cl -0.038 7.038 24 H 0.073 0.927 25 H 0.018 0.982 26 H 0.027 0.973 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.256 0.744 30 H 0.202 0.798 31 H 0.180 0.820 32 H 0.139 0.861 33 H 0.172 0.828 34 H 0.184 0.816 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.850 -24.003 4.341 24.869 hybrid contribution 0.129 1.583 0.845 1.799 sum 4.978 -22.419 5.186 23.544 Atomic orbital electron populations 1.70077 1.07803 1.27978 1.51211 1.25947 0.95755 1.03358 0.94556 0.85484 0.78238 0.77937 0.79301 1.19244 1.21103 1.18853 1.21560 0.94000 0.91719 1.51243 0.91237 1.19159 0.94484 0.92111 0.96165 1.21385 0.95078 0.82137 1.01258 1.55343 1.21845 1.21611 1.88468 1.01822 0.74345 0.71833 0.74388 1.93540 1.74246 1.85374 1.45985 1.93698 1.61491 1.53177 1.86881 1.33569 1.19564 1.09632 1.22839 1.22043 0.88886 0.88599 0.95767 1.19109 0.99241 0.97770 0.94551 1.21301 0.98719 0.96846 0.92838 1.21431 0.95445 0.95369 1.01389 1.21609 0.96980 0.99835 0.91925 1.21303 0.99267 0.95375 0.98024 1.21044 0.99881 0.97706 0.86009 1.98373 1.97214 1.88210 1.20039 0.92694 0.98206 0.97283 0.90774 0.91624 0.74420 0.79829 0.81984 0.86050 0.82755 0.81599 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.36 13.28 21.45 0.28 -55.07 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.55 -29.94 9.11 25.60 0.23 -29.71 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.02 0.99 5.11 29.85 0.15 1.14 16 10 C 0.13 5.04 6.16 86.38 0.53 5.58 16 11 N -1.11 -37.90 6.00 -187.49 -1.12 -39.03 16 12 S 2.68 83.35 4.90 -56.49 -0.28 83.07 16 13 O -1.00 -37.72 17.49 -128.00 -2.24 -39.96 16 14 O -0.96 -30.26 13.08 -128.00 -1.67 -31.94 16 15 C -0.75 -18.58 10.08 66.66 0.67 -17.91 16 16 C 0.07 1.49 8.81 23.65 0.21 1.70 16 17 C -0.11 -2.49 3.90 -20.10 -0.08 -2.57 16 18 C -0.08 -1.80 6.53 22.52 0.15 -1.66 16 19 C -0.12 -2.19 10.03 22.23 0.22 -1.97 16 20 C -0.09 -1.34 10.04 22.32 0.22 -1.12 16 21 C -0.12 -2.16 9.82 22.26 0.22 -1.95 16 22 C -0.02 -0.43 6.35 22.58 0.14 -0.29 16 23 Cl -0.07 -1.39 27.99 -2.72 -0.08 -1.47 16 24 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 25 H 0.00 -0.03 8.14 -2.38 -0.02 -0.04 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 28 H 0.07 2.65 7.75 -2.39 -0.02 2.63 16 29 H 0.42 13.60 8.65 -96.74 -0.84 12.76 16 30 H 0.18 3.93 8.06 -2.91 -0.02 3.91 16 31 H 0.16 2.73 7.99 -2.91 -0.02 2.70 16 32 H 0.12 2.71 7.46 -2.91 -0.02 2.69 16 33 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -70.27 329.56 0.33 -69.93 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.28 Total: 17.50 kcal Atomic # 6 Polarization: -51.31 SS G_CDS: 3.14 Total: -48.17 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -0.84 Total: -94.10 kcal Atomic # 8 Polarization: -67.98 SS G_CDS: -3.91 Total: -71.89 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 83.35 SS G_CDS: -0.28 Total: 83.07 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -70.27 0.33 -69.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784372037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.193 kcal (2) G-P(sol) polarization free energy of solvation -70.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds