Wall clock time and date at job start Tue Mar 31 2020 10:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31640 * 1 3 3 Si 1.86793 * 119.99805 * 2 1 4 4 H 1.48507 * 109.47179 * 270.00241 * 3 2 1 5 5 H 1.48495 * 109.47629 * 30.00248 * 3 2 1 6 6 H 1.48498 * 109.46914 * 150.00503 * 3 2 1 7 7 C 1.38797 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99652 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00406 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00011 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47096 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47316 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.46985 * 180.02562 * 12 11 10 14 14 C 1.34768 * 116.99697 * 180.02562 * 13 12 11 15 15 O 1.21526 * 120.00102 * 359.97438 * 14 13 12 16 16 C 1.47287 * 120.00061 * 180.02562 * 14 13 12 17 17 C 1.39810 * 120.20841 * 5.88663 * 16 14 13 18 18 C 1.37819 * 119.90990 * 179.97438 * 17 16 14 19 19 Cl 1.73605 * 119.83276 * 179.97438 * 18 17 16 20 20 C 1.38725 * 120.33259 * 359.73338 * 18 17 16 21 21 C 1.37946 * 120.42487 * 0.54919 * 20 18 17 22 22 C 1.38950 * 120.08023 * 359.45003 * 21 20 18 23 23 N 1.38891 * 120.16876 * 180.25723 * 22 21 20 24 24 H 0.97001 * 119.99857 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47184 * 60.00332 * 10 9 7 26 26 H 1.08990 * 109.47598 * 299.99856 * 10 9 7 27 27 H 1.09004 * 109.46640 * 60.00235 * 11 10 9 28 28 H 1.08995 * 109.47404 * 300.00670 * 11 10 9 29 29 H 1.09000 * 109.46611 * 60.00438 * 12 11 10 30 30 H 1.09001 * 109.46789 * 300.00381 * 12 11 10 31 31 H 1.08005 * 120.04665 * 359.96212 * 17 16 14 32 32 H 1.08000 * 119.78702 * 180.29703 * 20 18 17 33 33 H 1.08001 * 119.95976 * 179.72677 * 21 20 18 34 34 H 0.97003 * 119.99173 * 354.43739 * 23 22 21 35 35 H 0.96992 * 120.00660 * 174.44381 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9794 -5.3243 0.0001 12 6 3.1514 -6.3078 0.0008 13 8 2.6422 -7.6675 0.0008 14 6 3.5522 -8.6616 0.0018 15 8 4.7388 -8.3992 0.0023 16 6 3.1086 -10.0661 0.0013 17 6 1.7508 -10.3749 -0.1242 18 6 1.3426 -11.6913 -0.1244 19 17 -0.3439 -12.0725 -0.2797 20 6 2.2732 -12.7133 -0.0062 21 6 3.6157 -12.4242 0.1242 22 6 4.0465 -11.1032 0.1265 23 7 5.3983 -10.8101 0.2523 24 1 -0.4850 0.8401 0.0004 25 1 3.1245 -3.7313 0.8895 26 1 3.1245 -3.7314 -0.8904 27 1 1.3705 -5.4846 -0.8897 28 1 1.3709 -5.4840 0.8902 29 1 3.7598 -6.1472 0.8908 30 1 3.7602 -6.1481 -0.8892 31 1 1.0228 -9.5830 -0.2206 32 1 1.9440 -13.7419 -0.0123 33 1 4.3332 -13.2257 0.2201 34 1 6.0353 -11.5222 0.4197 35 1 5.7053 -9.8935 0.1730 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805362038.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:13 Heat of formation + Delta-G solvation = -81.607911 kcal Electronic energy + Delta-G solvation = -20043.525732 eV Core-core repulsion = 16579.032538 eV Total energy + Delta-G solvation = -3464.493194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.95576 -39.28970 -37.10354 -36.52940 -34.64210 -33.54816 -32.45342 -31.82268 -29.03872 -26.76631 -25.52846 -24.40626 -22.77837 -21.37228 -21.32471 -18.33726 -17.57214 -17.44585 -17.13889 -17.04032 -16.67001 -15.49495 -14.84926 -14.82678 -14.75108 -14.44154 -14.21759 -13.91778 -13.41824 -12.98194 -12.84904 -12.64034 -12.41349 -12.14318 -12.07215 -11.37752 -11.23960 -11.17971 -11.02599 -10.91970 -10.71179 -10.61277 -10.54505 -10.33459 -9.65158 -9.58006 -9.08543 -8.36745 -8.00138 -6.57473 -6.25630 -3.96783 0.35663 0.98033 1.93581 2.23675 2.48253 3.20557 3.21314 3.28131 3.33652 3.44387 3.52715 4.18930 4.25417 4.41449 4.71794 4.82911 4.97480 5.07665 5.11186 5.14156 5.34104 5.42022 5.45927 5.50413 5.61200 5.74930 5.80561 5.88597 6.06626 6.16099 6.33684 6.42835 6.64076 6.95095 7.41512 7.58089 7.63191 8.33842 9.20700 10.82511 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.022523 B = 0.002216 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.890950 B =12633.431851 C =13846.357728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.114 4.114 11 C -0.099 4.099 12 C 0.074 3.926 13 O -0.346 6.346 14 C 0.524 3.476 15 O -0.524 6.524 16 C -0.209 4.209 17 C 0.003 3.997 18 C -0.114 4.114 19 Cl -0.070 7.070 20 C -0.022 4.022 21 C -0.205 4.205 22 C 0.290 3.710 23 N -0.850 5.850 24 H 0.268 0.732 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.150 0.850 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.398 0.602 35 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.812 -27.695 0.224 28.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.667 4.667 8 H 0.091 0.909 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.137 4.137 12 C -0.001 4.001 13 O -0.261 6.261 14 C 0.372 3.628 15 O -0.416 6.416 16 C -0.216 4.216 17 C -0.016 4.016 18 C -0.143 4.143 19 Cl -0.042 7.042 20 C -0.042 4.042 21 C -0.228 4.228 22 C 0.177 3.823 23 N -0.396 5.396 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.168 0.832 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.226 0.774 35 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 5.732 -27.567 0.209 28.157 hybrid contribution 2.215 1.369 0.020 2.604 sum 7.947 -26.197 0.228 27.377 Atomic orbital electron populations 1.70021 1.05921 1.27425 1.47091 1.25023 0.95103 0.99132 0.94532 0.86144 0.79427 0.81444 0.78392 1.20238 1.20725 1.19675 1.22691 0.94576 0.90678 1.58709 0.90855 1.84671 1.08719 0.99210 1.96877 1.23175 1.03471 0.96317 1.03323 1.21299 0.96422 0.91538 1.04448 1.23328 0.97906 0.76175 1.02717 1.86542 1.39300 1.16944 1.83364 1.20776 0.83912 0.86106 0.72008 1.90469 1.18125 1.84170 1.48836 1.18383 0.93432 0.88950 1.20854 1.21179 0.94441 0.95614 0.90405 1.20447 0.85831 0.94041 1.13946 1.98371 1.14499 1.94543 1.96757 1.21015 0.91563 0.99007 0.92617 1.20538 0.96124 0.94026 1.12122 1.17778 0.84753 0.92190 0.87626 1.43527 1.04081 1.15000 1.76971 0.92233 0.91742 0.91731 0.90239 0.90248 0.90988 0.90979 0.83230 0.84404 0.84344 0.77424 0.73857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.83 13.22 55.49 0.73 -25.09 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.52 -14.74 9.50 30.94 0.29 -14.45 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.12 -3.18 21.44 -107.50 -2.30 -5.48 16 10 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 11 C -0.10 -1.58 5.60 -26.73 -0.15 -1.73 16 12 C 0.07 1.04 5.48 37.16 0.20 1.24 16 13 O -0.35 -4.72 9.49 -40.68 -0.39 -5.11 16 14 C 0.52 6.83 7.87 34.41 0.27 7.10 16 15 O -0.52 -7.35 13.44 -19.29 -0.26 -7.61 16 16 C -0.21 -2.28 5.89 -104.82 -0.62 -2.90 16 17 C 0.00 0.03 9.38 -39.15 -0.37 -0.34 16 18 C -0.11 -1.01 6.31 -39.55 -0.25 -1.26 16 19 Cl -0.07 -0.63 28.94 -51.86 -1.50 -2.13 16 20 C -0.02 -0.16 9.81 -39.51 -0.39 -0.54 16 21 C -0.21 -1.39 9.88 -39.42 -0.39 -1.78 16 22 C 0.29 2.61 6.76 -83.59 -0.57 2.05 16 23 N -0.85 -6.68 8.93 32.56 0.29 -6.39 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.06 1.25 8.14 -51.91 -0.42 0.82 16 26 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.15 1.48 7.62 -52.48 -0.40 1.08 16 32 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 34 H 0.40 1.87 8.84 -40.82 -0.36 1.51 16 35 H 0.42 4.08 5.34 -40.95 -0.22 3.86 16 LS Contribution 336.85 15.07 5.08 5.08 Total: -1.00 -31.72 336.85 -9.12 -40.84 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -3.91 Total: 2.21 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -1.84 Total: -12.74 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 1.02 Total: -31.48 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.65 Total: -12.72 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.30 Total: -5.48 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.72 -9.12 -40.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805362038.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.765 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds