Wall clock time and date at job start Tue Mar 31 2020 10:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31640 * 1 3 3 Si 1.86793 * 119.99805 * 2 1 4 4 H 1.48507 * 109.47179 * 270.00241 * 3 2 1 5 5 H 1.48495 * 109.47629 * 30.00248 * 3 2 1 6 6 H 1.48498 * 109.46914 * 150.00503 * 3 2 1 7 7 C 1.38797 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99652 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00406 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00011 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47096 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47316 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.46985 * 180.02562 * 12 11 10 14 14 C 1.34768 * 116.99697 * 180.02562 * 13 12 11 15 15 O 1.21526 * 120.00102 * 359.97438 * 14 13 12 16 16 C 1.47287 * 120.00061 * 180.02562 * 14 13 12 17 17 C 1.39810 * 120.20841 * 5.88663 * 16 14 13 18 18 C 1.37819 * 119.90990 * 179.97438 * 17 16 14 19 19 Cl 1.73605 * 119.83276 * 179.97438 * 18 17 16 20 20 C 1.38725 * 120.33259 * 359.73338 * 18 17 16 21 21 C 1.37946 * 120.42487 * 0.54919 * 20 18 17 22 22 C 1.38950 * 120.08023 * 359.45003 * 21 20 18 23 23 N 1.38891 * 120.16876 * 180.25723 * 22 21 20 24 24 H 0.97001 * 119.99857 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47184 * 60.00332 * 10 9 7 26 26 H 1.08990 * 109.47598 * 299.99856 * 10 9 7 27 27 H 1.09004 * 109.46640 * 60.00235 * 11 10 9 28 28 H 1.08995 * 109.47404 * 300.00670 * 11 10 9 29 29 H 1.09000 * 109.46611 * 60.00438 * 12 11 10 30 30 H 1.09001 * 109.46789 * 300.00381 * 12 11 10 31 31 H 1.08005 * 120.04665 * 359.96212 * 17 16 14 32 32 H 1.08000 * 119.78702 * 180.29703 * 20 18 17 33 33 H 1.08001 * 119.95976 * 179.72677 * 21 20 18 34 34 H 0.97003 * 119.99173 * 354.43739 * 23 22 21 35 35 H 0.96992 * 120.00660 * 174.44381 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9794 -5.3243 0.0001 12 6 3.1514 -6.3078 0.0008 13 8 2.6422 -7.6675 0.0008 14 6 3.5522 -8.6616 0.0018 15 8 4.7388 -8.3992 0.0023 16 6 3.1086 -10.0661 0.0013 17 6 1.7508 -10.3749 -0.1242 18 6 1.3426 -11.6913 -0.1244 19 17 -0.3439 -12.0725 -0.2797 20 6 2.2732 -12.7133 -0.0062 21 6 3.6157 -12.4242 0.1242 22 6 4.0465 -11.1032 0.1265 23 7 5.3983 -10.8101 0.2523 24 1 -0.4850 0.8401 0.0004 25 1 3.1245 -3.7313 0.8895 26 1 3.1245 -3.7314 -0.8904 27 1 1.3705 -5.4846 -0.8897 28 1 1.3709 -5.4840 0.8902 29 1 3.7598 -6.1472 0.8908 30 1 3.7602 -6.1481 -0.8892 31 1 1.0228 -9.5830 -0.2206 32 1 1.9440 -13.7419 -0.0123 33 1 4.3332 -13.2257 0.2201 34 1 6.0353 -11.5222 0.4197 35 1 5.7053 -9.8935 0.1730 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805362038.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:13 Heat of formation + Delta-G solvation = -99.698481 kcal Electronic energy + Delta-G solvation = -20044.310198 eV Core-core repulsion = 16579.032538 eV Total energy + Delta-G solvation = -3465.277660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.85933 -40.07218 -38.02067 -37.31904 -35.37809 -34.84830 -34.58403 -32.54125 -29.70986 -28.22418 -27.48252 -25.25998 -23.52087 -22.70722 -22.19143 -19.63062 -19.08023 -18.36411 -17.87225 -17.86245 -17.73228 -16.90344 -16.45421 -16.05682 -15.96408 -15.36273 -15.09052 -14.83601 -14.73055 -14.18054 -14.03302 -13.83008 -13.47405 -13.13588 -13.11093 -12.95223 -12.74781 -12.63011 -12.42382 -12.40835 -11.97288 -11.64009 -11.55810 -11.38167 -11.24761 -11.15412 -10.36628 -10.23734 -8.68931 -8.65054 -8.38584 -6.15298 -0.36452 0.32640 1.23192 1.28732 1.37195 1.39442 1.42472 1.51714 1.83651 2.26556 2.63916 2.82938 2.95974 3.27356 3.49843 3.71763 3.83509 3.95338 4.07016 4.13086 4.20281 4.30486 4.31751 4.51952 4.66759 4.81315 4.85638 5.00105 5.01267 5.07456 5.21300 5.31060 5.39343 5.55768 6.17240 6.30440 6.60551 6.86452 7.03830 8.70792 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.022523 B = 0.002216 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.890950 B =12633.431851 C =13846.357728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.075 0.925 9 S -0.187 6.187 10 C -0.090 4.090 11 C -0.087 4.087 12 C 0.082 3.918 13 O -0.352 6.352 14 C 0.519 3.481 15 O -0.540 6.540 16 C -0.233 4.233 17 C -0.008 4.008 18 C -0.121 4.121 19 Cl -0.074 7.074 20 C -0.014 4.014 21 C -0.193 4.193 22 C 0.285 3.715 23 N -0.845 5.845 24 H 0.272 0.728 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.413 0.587 35 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.405 -29.369 0.313 30.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.687 4.687 8 H 0.093 0.907 9 S 0.042 5.958 10 C -0.239 4.239 11 C -0.126 4.126 12 C 0.007 3.993 13 O -0.268 6.268 14 C 0.369 3.631 15 O -0.433 6.433 16 C -0.240 4.240 17 C -0.027 4.027 18 C -0.150 4.150 19 Cl -0.045 7.045 20 C -0.034 4.034 21 C -0.215 4.215 22 C 0.170 3.830 23 N -0.390 5.390 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.159 0.841 32 H 0.184 0.816 33 H 0.191 0.809 34 H 0.244 0.756 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.336 -29.278 0.301 30.184 hybrid contribution 1.745 1.715 -0.006 2.447 sum 9.080 -27.562 0.295 29.021 Atomic orbital electron populations 1.70153 1.07668 1.28617 1.47892 1.26076 0.96053 1.03141 0.93740 0.85002 0.78161 0.76331 0.78832 1.19279 1.19927 1.18719 1.23048 0.94837 0.91875 1.58961 0.90730 1.84666 1.13165 1.00905 1.97062 1.23053 1.00756 0.96397 1.03727 1.21113 0.97090 0.89924 1.04444 1.23071 0.96644 0.76386 1.03217 1.86527 1.39758 1.16764 1.83716 1.21216 0.83665 0.86651 0.71612 1.90461 1.18510 1.84468 1.49820 1.18383 0.94264 0.88053 1.23301 1.21128 0.94128 0.96179 0.91300 1.20579 0.86048 0.94104 1.14265 1.98370 1.14923 1.94457 1.96792 1.21368 0.91269 0.99859 0.90891 1.20909 0.96670 0.93745 1.10185 1.18014 0.84848 0.92702 0.87420 1.43509 1.04106 1.15149 1.76260 0.91909 0.91263 0.91230 0.90283 0.90316 0.90509 0.90510 0.84078 0.81596 0.80893 0.75602 0.74796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.67 13.22 21.65 0.29 -54.38 16 2 C 0.01 0.85 5.49 84.86 0.47 1.31 16 3 Si 0.99 43.84 29.55 68.60 2.03 45.87 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.54 -31.00 9.50 67.95 0.65 -30.36 16 8 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 9 S -0.19 -9.86 21.44 -56.49 -1.21 -11.07 16 10 C -0.09 -3.56 5.67 71.98 0.41 -3.15 16 11 C -0.09 -2.79 5.60 30.60 0.17 -2.62 16 12 C 0.08 2.27 5.48 71.98 0.39 2.66 16 13 O -0.35 -9.61 9.49 -56.79 -0.54 -10.15 16 14 C 0.52 13.45 7.87 70.20 0.55 14.00 16 15 O -0.54 -14.95 13.44 19.75 0.27 -14.68 16 16 C -0.23 -4.94 5.89 -19.99 -0.12 -5.05 16 17 C -0.01 -0.16 9.38 22.55 0.21 0.05 16 18 C -0.12 -1.99 6.31 22.29 0.14 -1.85 16 19 Cl -0.07 -1.24 28.94 -2.72 -0.08 -1.32 16 20 C -0.01 -0.16 9.81 22.32 0.22 0.06 16 21 C -0.19 -1.98 9.88 22.37 0.22 -1.76 16 22 C 0.28 4.60 6.76 38.72 0.26 4.86 16 23 N -0.84 -11.76 8.93 -50.91 -0.45 -12.22 16 24 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 25 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.07 2.66 8.14 -2.40 -0.02 2.65 16 27 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 28 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.14 2.90 7.62 -2.91 -0.02 2.87 16 32 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 33 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 34 H 0.41 2.86 8.84 -92.71 -0.82 2.05 16 35 H 0.41 7.59 5.34 -94.67 -0.51 7.08 16 Total: -1.00 -69.11 336.85 3.69 -65.42 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -0.18 Total: 14.38 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 3.57 Total: -21.84 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -0.17 Total: -66.60 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.27 Total: -24.84 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -9.86 SS G_CDS: -1.21 Total: -11.07 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -69.11 3.69 -65.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805362038.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.278 kcal (2) G-P(sol) polarization free energy of solvation -69.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds