Wall clock time and date at job start Tue Mar 31 2020 10:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86798 * 119.99962 * 2 1 4 4 H 1.48500 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47110 * 299.99352 * 3 2 1 6 6 H 1.48502 * 109.47516 * 59.99567 * 3 2 1 7 7 C 1.38796 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00264 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47434 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47065 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.46963 * 179.97438 * 12 11 10 14 14 C 1.34772 * 116.99996 * 180.02562 * 13 12 11 15 15 O 1.21530 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.47295 * 120.00197 * 180.02562 * 14 13 12 17 17 C 1.39886 * 120.08185 * 0.02562 * 16 14 13 18 18 C 1.36549 * 120.05879 * 179.97438 * 17 16 14 19 19 C 1.39277 * 120.23999 * 359.97438 * 18 17 16 20 20 N 1.39015 * 119.91223 * 180.02562 * 19 18 17 21 21 C 1.39163 * 120.17108 * 359.76935 * 19 18 17 22 22 C 1.37813 * 119.93701 * 0.51109 * 21 19 18 23 23 Cl 1.73599 * 120.12228 * 179.74700 * 22 21 19 24 24 H 0.96999 * 119.99397 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47149 * 59.99727 * 10 9 7 26 26 H 1.09003 * 109.46633 * 299.99939 * 10 9 7 27 27 H 1.09003 * 109.47031 * 59.99831 * 11 10 9 28 28 H 1.09003 * 109.46836 * 299.99957 * 11 10 9 29 29 H 1.09003 * 109.47159 * 60.00124 * 12 11 10 30 30 H 1.08994 * 109.47588 * 300.00080 * 12 11 10 31 31 H 1.07998 * 119.97382 * 359.97438 * 17 16 14 32 32 H 1.08004 * 119.87445 * 179.97438 * 18 17 16 33 33 H 0.97008 * 120.00081 * 359.97438 * 20 19 18 34 34 H 0.96997 * 120.00219 * 180.02562 * 20 19 18 35 35 H 1.08005 * 120.03013 * 180.25385 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3464 0.0006 5 1 1.8917 2.3964 -1.2126 6 1 1.8916 2.3966 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9793 -5.3243 0.0012 12 6 3.1513 -6.3077 0.0005 13 8 2.6421 -7.6675 0.0018 14 6 3.5521 -8.6617 0.0019 15 8 4.7387 -8.3992 0.0015 16 6 3.1085 -10.0662 0.0026 17 6 1.7431 -10.3703 0.0025 18 6 1.3324 -11.6726 0.0025 19 6 2.2690 -12.7034 0.0022 20 7 1.8433 -14.0268 0.0017 21 6 3.6297 -12.4121 -0.0031 22 6 4.0523 -11.1003 0.0026 23 17 5.7486 -10.7314 0.0027 24 1 -0.4849 0.8401 -0.0004 25 1 3.1245 -3.7314 0.8905 26 1 3.1244 -3.7313 -0.8895 27 1 1.3704 -5.4847 -0.8886 28 1 1.3710 -5.4840 0.8914 29 1 3.7606 -6.1475 0.8901 30 1 3.7594 -6.1479 -0.8898 31 1 1.0131 -9.5744 0.0024 32 1 0.2774 -11.9039 0.0029 33 1 0.8950 -14.2313 0.0020 34 1 2.4944 -14.7457 0.0018 35 1 4.3540 -13.2133 -0.0075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805423918.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:20 Heat of formation + Delta-G solvation = -97.147981 kcal Electronic energy + Delta-G solvation = -19962.634753 eV Core-core repulsion = 16497.467692 eV Total energy + Delta-G solvation = -3465.167062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54812 -40.17013 -37.83606 -37.38249 -35.56666 -34.81529 -34.56679 -31.94003 -30.43299 -28.12960 -27.38041 -24.58250 -23.92186 -22.70431 -21.97026 -19.61611 -19.05306 -18.43693 -17.90122 -17.65629 -17.57567 -16.89853 -16.22650 -15.97939 -15.66767 -15.43783 -15.13999 -14.77614 -14.76051 -14.30925 -13.95205 -13.79118 -13.60162 -13.12704 -13.01552 -12.95203 -12.63039 -12.54283 -12.35761 -12.33124 -12.20610 -11.55364 -11.53584 -11.43927 -11.15667 -10.96980 -10.35541 -9.95444 -8.71488 -8.67266 -8.38098 -6.14173 -0.27936 0.24178 1.06460 1.28790 1.38678 1.44894 1.54975 1.57149 1.89092 2.27217 2.70119 2.84729 2.96335 3.29268 3.65872 3.78324 3.87551 4.02932 4.04791 4.17263 4.26800 4.30923 4.34880 4.53347 4.69889 4.78838 4.93956 5.03995 5.09741 5.19079 5.25528 5.40608 5.47954 5.54437 6.18382 6.35923 6.77497 6.85873 7.04588 8.71490 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.030010 B = 0.002134 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.802066 B =13117.367378 C =14024.419056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.540 4.540 8 H 0.073 0.927 9 S -0.182 6.182 10 C -0.092 4.092 11 C -0.084 4.084 12 C 0.083 3.917 13 O -0.354 6.354 14 C 0.501 3.499 15 O -0.527 6.527 16 C -0.215 4.215 17 C 0.001 3.999 18 C -0.206 4.206 19 C 0.277 3.723 20 N -0.840 5.840 21 C -0.213 4.213 22 C 0.058 3.942 23 Cl -0.053 7.053 24 H 0.272 0.728 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.153 0.847 32 H 0.165 0.835 33 H 0.418 0.582 34 H 0.414 0.586 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.459 -32.259 0.001 32.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.688 4.688 8 H 0.091 0.909 9 S 0.046 5.954 10 C -0.241 4.241 11 C -0.122 4.122 12 C 0.008 3.992 13 O -0.271 6.271 14 C 0.348 3.652 15 O -0.417 6.417 16 C -0.220 4.220 17 C -0.019 4.019 18 C -0.228 4.228 19 C 0.164 3.836 20 N -0.377 5.377 21 C -0.237 4.237 22 C 0.030 3.970 23 Cl -0.023 7.023 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.170 0.830 32 H 0.183 0.817 33 H 0.249 0.751 34 H 0.245 0.755 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.662 -32.217 0.000 32.327 hybrid contribution 2.004 1.329 0.003 2.404 sum 4.665 -30.888 0.003 31.238 Atomic orbital electron populations 1.70154 1.07590 1.28538 1.47950 1.26063 0.96077 1.03082 0.93764 0.84959 0.78370 0.76666 0.78326 1.18821 1.19611 1.19622 1.23086 0.94827 0.91988 1.58861 0.90888 1.84585 1.13017 1.00733 1.97044 1.23069 1.00794 0.96646 1.03570 1.21090 0.96948 0.89661 1.04529 1.22979 0.96627 0.76876 1.02719 1.86482 1.39913 1.16400 1.84266 1.21360 0.83999 0.87031 0.72816 1.90896 1.18460 1.85252 1.47139 1.18665 0.94998 0.87936 1.20362 1.21082 0.92819 0.98239 0.89742 1.20734 1.00974 0.90733 1.10376 1.17888 0.91521 0.86804 0.87363 1.42525 1.12228 1.02799 1.80101 1.20515 0.95544 0.94275 1.13355 1.20869 0.85042 0.93830 0.97233 1.98416 1.12828 1.95047 1.96020 0.91895 0.91462 0.91455 0.90111 0.90103 0.91132 0.91119 0.82970 0.81741 0.75068 0.75481 0.82456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.69 13.22 21.65 0.29 -54.40 16 2 C 0.02 0.87 5.49 84.86 0.47 1.33 16 3 Si 0.99 44.34 29.55 68.60 2.03 46.36 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.54 -31.40 9.50 67.95 0.65 -30.75 16 8 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 9 S -0.18 -9.71 21.44 -56.49 -1.21 -10.92 16 10 C -0.09 -3.73 5.67 71.98 0.41 -3.32 16 11 C -0.08 -2.75 5.60 30.59 0.17 -2.58 16 12 C 0.08 2.50 5.48 71.98 0.39 2.90 16 13 O -0.35 -10.25 9.46 -56.83 -0.54 -10.78 16 14 C 0.50 14.76 7.88 70.20 0.55 15.31 16 15 O -0.53 -18.03 13.75 19.74 0.27 -17.76 16 16 C -0.22 -5.00 5.88 -20.07 -0.12 -5.12 16 17 C 0.00 0.01 9.55 22.27 0.21 0.22 16 18 C -0.21 -2.21 9.82 22.12 0.22 -1.99 16 19 C 0.28 2.64 6.75 38.48 0.26 2.90 16 20 N -0.84 -1.45 9.05 -51.40 -0.47 -1.91 16 21 C -0.21 -2.92 9.66 22.39 0.22 -2.70 16 22 C 0.06 1.24 6.35 22.60 0.14 1.38 16 23 Cl -0.05 -1.29 26.02 -2.72 -0.07 -1.36 16 24 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 25 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.15 2.35 7.60 -2.91 -0.02 2.33 16 32 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 33 H 0.42 -0.93 8.83 -92.70 -0.82 -1.75 16 34 H 0.41 -0.63 8.83 -92.71 -0.82 -1.45 16 35 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -74.50 337.77 3.38 -71.13 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -0.50 Total: 2.06 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 3.57 Total: -22.41 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.18 Total: -56.32 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.27 Total: -28.54 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -9.71 SS G_CDS: -1.21 Total: -10.92 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.07 Total: -1.36 kcal Total: -74.50 3.38 -71.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805423918.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.019 kcal (2) G-P(sol) polarization free energy of solvation -74.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds