Wall clock time and date at job start Tue Mar 31 2020 10:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86794 * 119.99625 * 2 1 4 4 H 1.48500 * 109.47170 * 269.99900 * 3 2 1 5 5 H 1.48497 * 109.47589 * 29.99981 * 3 2 1 6 6 H 1.48501 * 109.46996 * 150.00652 * 3 2 1 7 7 C 1.38949 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00202 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99723 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99580 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00355 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99566 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 10 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 C 1.50693 * 109.47486 * 179.72204 * 16 14 13 18 18 C 1.38249 * 120.00602 * 264.72159 * 17 16 14 19 19 C 1.38221 * 120.04837 * 179.76882 * 18 17 16 20 20 C 1.38251 * 120.06019 * 0.50652 * 19 18 17 21 21 C 1.38282 * 120.01534 * 359.74663 * 20 19 18 22 22 Cl 1.73607 * 120.02442 * 179.97438 * 21 20 19 23 23 C 1.38403 * 120.01279 * 84.99752 * 17 16 14 24 24 F 1.35111 * 120.02310 * 0.02562 * 23 17 16 25 25 H 0.97004 * 120.00305 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99596 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47259 * 60.00127 * 12 10 9 28 28 H 1.09004 * 109.46840 * 299.99907 * 12 10 9 29 29 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 30 30 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 31 31 H 1.07999 * 119.97352 * 0.02562 * 18 17 16 32 32 H 1.07997 * 119.96569 * 180.25529 * 19 18 17 33 33 H 1.08003 * 119.99230 * 179.77268 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5607 -2.3704 -0.0011 13 8 6.0447 -3.7394 -0.0017 14 6 7.3755 -3.9153 -0.0012 15 8 8.1115 -2.9570 -0.0008 16 6 7.9516 -5.3077 -0.0080 17 6 9.4564 -5.2288 -0.0129 18 6 10.1485 -5.2985 -1.2077 19 6 11.5286 -5.2214 -1.2136 20 6 12.2197 -5.0851 -0.0240 21 6 11.5303 -5.0204 1.1730 22 17 12.3980 -4.8499 2.6670 23 6 10.1464 -5.0924 1.1791 24 9 9.4712 -5.0303 2.3477 25 1 -0.4851 0.8401 0.0004 26 1 3.8648 -0.3632 -0.0007 27 1 5.9241 -1.8566 0.8889 28 1 5.9240 -1.8566 -0.8911 29 1 7.6187 -5.8430 0.8813 30 1 7.6126 -5.8369 -0.8986 31 1 9.6102 -5.4090 -2.1374 32 1 12.0676 -5.2718 -2.1481 33 1 13.2982 -5.0286 -0.0297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811333512.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:58 Heat of formation + Delta-G solvation = -141.548170 kcal Electronic energy + Delta-G solvation = -22607.237480 eV Core-core repulsion = 18573.931906 eV Total energy + Delta-G solvation = -4033.305574 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.051 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.28736 -40.62784 -39.47008 -38.32676 -36.97980 -36.24039 -34.07293 -33.42667 -31.80896 -30.86040 -29.30907 -27.82216 -24.53803 -23.29959 -22.87150 -20.83230 -19.65953 -18.61637 -18.10531 -17.79248 -17.29440 -16.73078 -16.40579 -16.21252 -15.92730 -15.45302 -14.94144 -14.85615 -14.40645 -14.01618 -13.75200 -13.62488 -13.34348 -13.06499 -12.92283 -12.47985 -12.28342 -12.18645 -12.04204 -11.88660 -11.81667 -11.31769 -11.27174 -10.65798 -10.59692 -10.55970 -10.05826 -9.68498 -9.33705 -9.09632 -8.67962 -8.30161 -6.39953 -3.92923 0.51982 0.58119 1.60660 2.16565 2.51850 2.98480 3.02805 3.07350 3.12279 3.54380 3.66463 3.96508 4.03220 4.30039 4.38099 4.53315 4.64356 4.80247 4.92434 5.07865 5.10417 5.22204 5.34682 5.42682 5.50172 5.53360 5.66358 5.66638 5.81800 6.21297 6.46782 7.43727 7.73149 8.00004 8.46917 8.82861 9.29070 9.64525 10.72286 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.026155 B = 0.002507 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.278492 B =11166.776029 C =11420.140493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.122 0.878 9 N -0.579 5.579 10 C 0.447 3.553 11 O -0.557 6.557 12 C 0.058 3.942 13 O -0.322 6.322 14 C 0.461 3.539 15 O -0.507 6.507 16 C -0.074 4.074 17 C -0.097 4.097 18 C -0.070 4.070 19 C -0.117 4.117 20 C -0.081 4.081 21 C -0.075 4.075 22 Cl -0.050 7.050 23 C 0.128 3.872 24 F -0.122 7.122 25 H 0.276 0.724 26 H 0.373 0.627 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.536 -9.605 -1.573 28.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.219 5.219 10 C 0.232 3.768 11 O -0.439 6.439 12 C -0.019 4.019 13 O -0.237 6.237 14 C 0.303 3.697 15 O -0.395 6.395 16 C -0.112 4.112 17 C -0.098 4.098 18 C -0.088 4.088 19 C -0.135 4.135 20 C -0.099 4.099 21 C -0.102 4.102 22 Cl -0.021 7.021 23 C 0.108 3.892 24 F -0.100 7.100 25 H 0.086 0.914 26 H 0.206 0.794 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 26.135 -9.869 -1.382 27.970 hybrid contribution 0.588 1.689 0.429 1.839 sum 26.722 -8.180 -0.953 27.963 Atomic orbital electron populations 1.69615 1.05650 1.27774 1.48349 1.25038 0.95524 0.98069 0.97256 0.86677 0.79876 0.83860 0.79088 1.19401 1.19933 1.19351 1.19425 0.78657 0.96883 1.48681 0.85992 1.42040 1.07650 1.05710 1.66534 1.19179 0.86904 0.85146 0.85527 1.90603 1.69027 1.30705 1.53541 1.22769 0.95162 0.80368 1.03637 1.86545 1.22816 1.31352 1.82946 1.23400 0.81241 0.92106 0.72920 1.90683 1.60660 1.42815 1.45368 1.20190 0.89993 0.92878 1.08107 1.19330 0.94711 1.03738 0.92041 1.21091 0.94372 0.96348 0.97030 1.21155 0.93993 1.00277 0.98085 1.21017 1.00869 0.98119 0.89936 1.20951 0.90611 1.09007 0.89650 1.98396 1.75749 1.96093 1.31839 1.17212 0.88175 1.01909 0.81936 1.91562 1.79826 1.93253 1.45339 0.91376 0.79378 0.89383 0.89365 0.85924 0.85431 0.83996 0.84039 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.10 13.96 55.50 0.77 -24.32 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.04 27.74 -169.99 -4.71 14.32 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 5 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 7 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 9 N -0.58 -13.73 5.09 -10.97 -0.06 -13.79 16 10 C 0.45 10.33 7.86 -10.99 -0.09 10.24 16 11 O -0.56 -15.22 16.08 -14.11 -0.23 -15.44 16 12 C 0.06 1.04 5.94 36.01 0.21 1.25 16 13 O -0.32 -5.61 9.75 -45.90 -0.45 -6.06 16 14 C 0.46 6.69 7.95 36.00 0.29 6.98 16 15 O -0.51 -8.35 15.78 -18.76 -0.30 -8.65 16 16 C -0.07 -0.75 5.72 -29.04 -0.17 -0.91 16 17 C -0.10 -0.96 4.38 -104.56 -0.46 -1.42 16 18 C -0.07 -0.53 9.68 -39.58 -0.38 -0.91 16 19 C -0.12 -0.74 10.04 -39.58 -0.40 -1.14 16 20 C -0.08 -0.59 9.83 -39.56 -0.39 -0.98 16 21 C -0.07 -0.74 6.33 -39.44 -0.25 -0.98 16 22 Cl -0.05 -0.49 28.62 -51.86 -1.48 -1.97 16 23 C 0.13 1.44 7.22 -39.39 -0.28 1.16 16 24 F -0.12 -1.56 16.14 2.25 0.04 -1.53 16 25 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 27 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 28 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 29 H 0.12 1.12 7.79 -51.93 -0.40 0.72 16 30 H 0.13 0.90 8.05 -51.93 -0.42 0.49 16 31 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 33 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -34.56 322.24 -6.45 -41.01 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -2.73 Total: 5.93 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -2.16 Total: 5.65 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.72 Total: -38.11 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.97 Total: -30.15 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.32 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.97 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.56 -6.45 -41.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811333512.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.542 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds