Wall clock time and date at job start Tue Mar 31 2020 10:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21268 * 120.00285 * 2 1 4 4 C 1.46997 * 120.00163 * 179.97438 * 2 1 3 5 5 N 1.30496 * 124.73396 * 359.97438 * 4 2 1 6 6 C 1.30164 * 117.40304 * 180.02562 * 5 4 2 7 7 C 1.37408 * 114.00123 * 359.97438 * 6 5 4 8 8 C 1.47093 * 126.15843 * 179.97438 * 7 6 5 9 9 O 1.21535 * 119.99922 * 0.02562 * 8 7 6 10 10 O 1.34809 * 120.00154 * 180.02562 * 8 7 6 11 11 C 1.45206 * 116.99930 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47129 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.46965 * 180.02562 * 12 11 10 14 14 S 1.81003 * 109.46891 * 180.02562 * 13 12 11 15 15 C 1.76196 * 99.99843 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00530 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99953 * 179.97438 * 15 14 13 18 18 N 1.31631 * 119.99789 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47650 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47297 * 120.00357 * 19 17 15 22 22 H 1.48503 * 109.46882 * 239.99874 * 19 17 15 23 23 S 1.70923 * 124.74408 * 180.30534 * 4 2 1 24 24 H 1.08996 * 109.47318 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.46898 * 300.00311 * 1 2 3 26 26 H 1.08998 * 109.46798 * 59.99949 * 1 2 3 27 27 H 1.08000 * 122.99975 * 180.02562 * 6 5 4 28 28 H 1.09004 * 109.47122 * 299.99980 * 11 10 8 29 29 H 1.09000 * 109.47070 * 60.00006 * 11 10 8 30 30 H 1.09004 * 109.46930 * 299.99887 * 12 11 10 31 31 H 1.09004 * 109.47059 * 59.99488 * 12 11 10 32 32 H 1.09004 * 109.46976 * 299.99579 * 13 12 11 33 33 H 1.08992 * 109.47530 * 59.99431 * 13 12 11 34 34 H 0.96995 * 119.99998 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2420 -1.2730 0.0006 5 7 1.6850 -2.4531 0.0016 6 6 2.4744 -3.4881 0.0025 7 6 3.8115 -3.1713 0.0017 8 6 4.9298 -4.1268 0.0029 9 8 4.7081 -5.3217 0.0044 10 8 6.2006 -3.6770 0.0024 11 6 7.2537 -4.6768 0.0031 12 6 8.6168 -3.9818 0.0031 13 6 9.7263 -5.0352 0.0032 14 16 11.3388 -4.2130 0.0039 15 6 12.3996 -5.6199 0.0047 16 1 11.9779 -6.6142 0.0042 17 6 13.7773 -5.4503 0.0048 18 7 14.2912 -4.2385 0.0039 19 14 14.9018 -6.9419 0.0049 20 1 14.0820 -8.1800 0.0054 21 1 15.7590 -6.9157 -1.2074 22 1 15.7586 -6.9156 1.2175 23 16 3.9454 -1.4143 0.0081 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.1109 -4.5051 0.0029 28 1 7.1635 -5.2989 0.8937 29 1 7.1633 -5.3003 -0.8863 30 1 8.7072 -3.3594 -0.8872 31 1 8.7068 -3.3585 0.8928 32 1 9.6360 -5.6579 0.8933 33 1 9.6360 -5.6582 -0.8866 34 1 15.2539 -4.1200 0.0036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840693143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:42 Heat of formation + Delta-G solvation = -85.041253 kcal Electronic energy + Delta-G solvation = -19558.939557 eV Core-core repulsion = 16096.341189 eV Total energy + Delta-G solvation = -3462.598368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.043 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.92330 -40.34975 -39.35330 -36.89013 -33.65158 -32.47969 -32.15650 -30.23823 -27.66316 -26.48315 -25.49642 -23.33991 -22.17409 -21.44896 -19.75971 -19.07677 -17.61731 -17.38983 -17.18711 -16.89612 -16.10874 -16.06598 -15.52852 -14.93367 -14.85631 -14.80195 -14.33366 -14.31591 -13.53726 -12.93971 -12.93019 -12.79895 -12.71065 -12.25699 -12.06015 -11.46311 -11.29917 -11.26165 -11.07878 -10.99264 -10.86947 -10.68773 -10.43548 -10.31202 -10.17499 -9.74716 -9.68147 -9.11799 -8.39951 -6.60727 -6.28353 -3.99717 -0.89624 0.44286 0.96903 1.09991 2.04054 2.19045 2.48901 3.03343 3.18249 3.19087 3.27314 3.48378 3.90543 4.16337 4.32137 4.45138 4.56031 4.89349 4.94903 4.99476 5.03979 5.08387 5.30400 5.31954 5.37333 5.48435 5.68486 5.76367 6.00416 6.21742 6.36681 6.51231 6.58277 6.90279 7.32586 7.56059 8.31581 9.18251 10.79851 Molecular weight = 315.04amu Principal moments of inertia in cm(-1) A = 0.036111 B = 0.001986 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.203238 B =14092.920902 C =14837.069676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.437 3.563 3 O -0.437 6.437 4 C -0.068 4.068 5 N -0.431 5.431 6 C 0.124 3.876 7 C -0.279 4.279 8 C 0.543 3.457 9 O -0.487 6.487 10 O -0.350 6.350 11 C 0.075 3.925 12 C -0.099 4.099 13 C -0.115 4.115 14 S -0.123 6.123 15 C -0.519 4.519 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.869 5.869 19 Si 0.920 3.080 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.279 1.279 23 S 0.341 5.659 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.200 0.800 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.672 6.160 0.005 28.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.309 3.691 3 O -0.308 6.308 4 C -0.336 4.336 5 N -0.150 5.150 6 C -0.040 4.040 7 C -0.403 4.403 8 C 0.384 3.616 9 O -0.376 6.376 10 O -0.267 6.267 11 C 0.000 4.000 12 C -0.137 4.137 13 C -0.263 4.263 14 S 0.105 5.895 15 C -0.667 4.667 16 H 0.092 0.908 17 C -0.138 4.138 18 N -0.504 5.504 19 Si 0.746 3.254 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.205 1.205 23 S 0.601 5.399 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.216 0.784 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.634 8.432 0.014 27.937 hybrid contribution 0.176 -3.498 -0.007 3.503 sum -26.458 4.934 0.007 26.914 Atomic orbital electron populations 1.22086 0.90647 1.06372 1.05186 1.21819 0.92390 0.84146 0.70716 1.90657 1.72046 1.32491 1.35620 1.28008 0.97759 0.98669 1.09149 1.66287 1.38386 0.96945 1.13381 1.22595 0.85952 0.99653 0.95789 1.25956 0.97388 0.98136 1.18831 1.19324 0.82357 0.86211 0.73658 1.90906 1.85408 1.16025 1.45230 1.86547 1.14613 1.41951 1.83564 1.23421 0.84066 0.89400 1.03101 1.21315 0.89273 0.98622 1.04522 1.23178 0.99296 1.00427 1.03441 1.84675 0.93845 1.14061 1.96886 1.22738 0.92713 0.92539 1.58696 0.90752 1.25028 0.97322 0.96947 0.94492 1.70023 1.12558 1.20735 1.47112 0.86087 0.79910 0.81448 0.77928 1.19573 1.20522 1.20527 1.84500 1.02209 0.97001 1.56164 0.88385 0.88079 0.88075 0.78379 0.90638 0.90631 0.90185 0.90179 0.91642 0.91638 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.76 10.31 36.00 0.37 -0.39 16 2 C 0.44 3.28 7.25 -30.76 -0.22 3.05 16 3 O -0.44 -4.41 17.60 5.57 0.10 -4.31 16 4 C -0.07 -0.56 7.16 -14.57 -0.10 -0.67 16 5 N -0.43 -3.62 9.73 -12.19 -0.12 -3.74 16 6 C 0.12 1.06 11.18 -18.56 -0.21 0.85 16 7 C -0.28 -2.77 6.57 -36.29 -0.24 -3.01 16 8 C 0.54 6.70 7.95 34.32 0.27 6.97 16 9 O -0.49 -6.95 16.67 -19.29 -0.32 -7.27 16 10 O -0.35 -4.53 10.13 -40.79 -0.41 -4.94 16 11 C 0.07 1.00 5.48 37.16 0.20 1.20 16 12 C -0.10 -1.53 5.60 -26.73 -0.15 -1.68 16 13 C -0.11 -2.21 5.67 37.16 0.21 -2.00 16 14 S -0.12 -3.13 21.44 -107.50 -2.30 -5.43 16 15 C -0.52 -14.61 9.50 30.94 0.29 -14.32 16 16 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 17 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 18 N -0.87 -25.61 13.22 55.49 0.73 -24.88 16 19 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 S 0.34 3.00 22.78 -107.50 -2.45 0.55 16 24 H 0.10 0.39 7.37 -51.93 -0.38 0.01 16 25 H 0.10 0.30 8.14 -51.92 -0.42 -0.13 16 26 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 33 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -32.65 341.27 -8.05 -40.70 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: -3.73 Total: -4.01 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 0.33 Total: -8.08 kcal Atomic # 7 Polarization: -29.23 SS G_CDS: 0.62 Total: -28.62 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.64 Total: -16.52 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -4.75 Total: -4.88 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.65 -8.05 -40.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840693143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.337 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds