Wall clock time and date at job start Tue Mar 31 2020 10:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21268 * 120.00285 * 2 1 4 4 C 1.46997 * 120.00163 * 179.97438 * 2 1 3 5 5 N 1.30496 * 124.73396 * 359.97438 * 4 2 1 6 6 C 1.30164 * 117.40304 * 180.02562 * 5 4 2 7 7 C 1.37408 * 114.00123 * 359.97438 * 6 5 4 8 8 C 1.47093 * 126.15843 * 179.97438 * 7 6 5 9 9 O 1.21535 * 119.99922 * 0.02562 * 8 7 6 10 10 O 1.34809 * 120.00154 * 180.02562 * 8 7 6 11 11 C 1.45206 * 116.99930 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47129 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.46965 * 180.02562 * 12 11 10 14 14 S 1.81003 * 109.46891 * 180.02562 * 13 12 11 15 15 C 1.76196 * 99.99843 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00530 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99953 * 179.97438 * 15 14 13 18 18 N 1.31631 * 119.99789 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47650 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47297 * 120.00357 * 19 17 15 22 22 H 1.48503 * 109.46882 * 239.99874 * 19 17 15 23 23 S 1.70923 * 124.74408 * 180.30534 * 4 2 1 24 24 H 1.08996 * 109.47318 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.46898 * 300.00311 * 1 2 3 26 26 H 1.08998 * 109.46798 * 59.99949 * 1 2 3 27 27 H 1.08000 * 122.99975 * 180.02562 * 6 5 4 28 28 H 1.09004 * 109.47122 * 299.99980 * 11 10 8 29 29 H 1.09000 * 109.47070 * 60.00006 * 11 10 8 30 30 H 1.09004 * 109.46930 * 299.99887 * 12 11 10 31 31 H 1.09004 * 109.47059 * 59.99488 * 12 11 10 32 32 H 1.09004 * 109.46976 * 299.99579 * 13 12 11 33 33 H 1.08992 * 109.47530 * 59.99431 * 13 12 11 34 34 H 0.96995 * 119.99998 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2420 -1.2730 0.0006 5 7 1.6850 -2.4531 0.0016 6 6 2.4744 -3.4881 0.0025 7 6 3.8115 -3.1713 0.0017 8 6 4.9298 -4.1268 0.0029 9 8 4.7081 -5.3217 0.0044 10 8 6.2006 -3.6770 0.0024 11 6 7.2537 -4.6768 0.0031 12 6 8.6168 -3.9818 0.0031 13 6 9.7263 -5.0352 0.0032 14 16 11.3388 -4.2130 0.0039 15 6 12.3996 -5.6199 0.0047 16 1 11.9779 -6.6142 0.0042 17 6 13.7773 -5.4503 0.0048 18 7 14.2912 -4.2385 0.0039 19 14 14.9018 -6.9419 0.0049 20 1 14.0820 -8.1800 0.0054 21 1 15.7590 -6.9157 -1.2074 22 1 15.7586 -6.9156 1.2175 23 16 3.9454 -1.4143 0.0081 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.1109 -4.5051 0.0029 28 1 7.1635 -5.2989 0.8937 29 1 7.1633 -5.3003 -0.8863 30 1 8.7072 -3.3594 -0.8872 31 1 8.7068 -3.3585 0.8928 32 1 9.6360 -5.6579 0.8933 33 1 9.6360 -5.6582 -0.8866 34 1 15.2539 -4.1200 0.0036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840693143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:42 Heat of formation + Delta-G solvation = -104.549687 kcal Electronic energy + Delta-G solvation = -19559.785506 eV Core-core repulsion = 16096.341189 eV Total energy + Delta-G solvation = -3463.444317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.043 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.78488 -41.14486 -40.05377 -37.93867 -34.97620 -34.59407 -32.82941 -30.82355 -28.55268 -27.89258 -27.24439 -24.22062 -22.92951 -22.71009 -20.60964 -19.78761 -19.54105 -18.38541 -18.01422 -17.92708 -16.93645 -16.90732 -16.73823 -16.16890 -16.11696 -16.06536 -15.36790 -15.09069 -14.95439 -14.33149 -14.15021 -13.84872 -13.22117 -13.14126 -13.09871 -12.97572 -12.81505 -12.65276 -12.48081 -12.43007 -12.17718 -11.72981 -11.60454 -11.49682 -11.16814 -10.96986 -10.91290 -10.45162 -10.36384 -8.68893 -8.39151 -6.15516 -1.61597 -0.25956 0.27334 0.41982 1.14516 1.24878 1.34951 1.38228 1.50351 1.73892 1.76806 2.25977 2.41128 2.95683 3.24280 3.29677 3.47306 3.77498 3.82183 3.90824 3.97019 4.12442 4.30948 4.45946 4.61279 4.63811 4.66103 4.74184 4.98924 4.99404 5.15162 5.24644 5.39691 5.91275 6.17211 6.24061 6.34478 7.03714 8.70385 Molecular weight = 315.04amu Principal moments of inertia in cm(-1) A = 0.036111 B = 0.001986 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.203238 B =14092.920902 C =14837.069676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.439 3.561 3 O -0.466 6.466 4 C -0.062 4.062 5 N -0.431 5.431 6 C 0.136 3.864 7 C -0.298 4.298 8 C 0.548 3.452 9 O -0.510 6.510 10 O -0.354 6.354 11 C 0.082 3.918 12 C -0.088 4.088 13 C -0.092 4.092 14 S -0.186 6.186 15 C -0.540 4.540 16 H 0.075 0.925 17 C 0.015 3.985 18 N -0.907 5.907 19 Si 0.995 3.005 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.272 1.272 23 S 0.338 5.662 24 H 0.102 0.898 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.217 0.783 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.381 5.390 0.004 29.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.313 3.687 3 O -0.340 6.340 4 C -0.330 4.330 5 N -0.149 5.149 6 C -0.028 4.028 7 C -0.422 4.422 8 C 0.391 3.609 9 O -0.400 6.400 10 O -0.270 6.270 11 C 0.007 3.993 12 C -0.127 4.127 13 C -0.240 4.240 14 S 0.042 5.958 15 C -0.687 4.687 16 H 0.093 0.907 17 C -0.190 4.190 18 N -0.543 5.543 19 Si 0.817 3.183 20 H -0.186 1.186 21 H -0.197 1.197 22 H -0.197 1.197 23 S 0.599 5.401 24 H 0.121 0.879 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.234 0.766 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.357 7.671 0.013 29.376 hybrid contribution 0.553 -3.186 -0.007 3.234 sum -27.804 4.485 0.007 28.164 Atomic orbital electron populations 1.22158 0.87655 1.07175 1.06669 1.22368 0.93734 0.83159 0.69414 1.90657 1.72827 1.33245 1.37224 1.28385 0.97489 0.99274 1.07852 1.66365 1.38037 0.96838 1.13671 1.22925 0.85389 1.00451 0.94016 1.25789 0.97082 0.98197 1.21132 1.19561 0.82271 0.86338 0.72768 1.90892 1.85560 1.16986 1.46554 1.86526 1.14999 1.41744 1.83747 1.23189 0.83185 0.89100 1.03806 1.21130 0.89339 0.97572 1.04616 1.23060 0.96272 1.00834 1.03881 1.84658 0.98204 1.15839 1.97066 1.23095 0.93730 0.93044 1.58864 0.90683 1.26066 0.98977 1.00184 0.93751 1.70150 1.13128 1.23080 1.47951 0.84958 0.77588 0.77521 0.78261 1.18639 1.19724 1.19731 1.84548 1.02987 0.96411 1.56164 0.87929 0.86438 0.86435 0.76648 0.89988 0.89981 0.90157 0.90148 0.91129 0.91121 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 10.31 71.23 0.73 -0.30 16 2 C 0.44 5.92 7.25 27.98 0.20 6.12 16 3 O -0.47 -9.00 17.60 -2.99 -0.05 -9.05 16 4 C -0.06 -0.94 7.16 87.19 0.62 -0.31 16 5 N -0.43 -6.43 9.73 -192.47 -1.87 -8.30 16 6 C 0.14 2.10 11.18 84.74 0.95 3.05 16 7 C -0.30 -5.60 6.57 24.40 0.16 -5.44 16 8 C 0.55 12.99 7.95 70.15 0.56 13.55 16 9 O -0.51 -14.02 16.67 19.72 0.33 -13.69 16 10 O -0.35 -8.81 10.13 -57.21 -0.58 -9.39 16 11 C 0.08 2.10 5.48 71.98 0.39 2.49 16 12 C -0.09 -2.65 5.60 30.59 0.17 -2.48 16 13 C -0.09 -3.48 5.67 71.98 0.41 -3.07 16 14 S -0.19 -9.65 21.44 -56.49 -1.21 -10.86 16 15 C -0.54 -30.63 9.50 67.96 0.65 -29.99 16 16 H 0.08 4.10 7.80 -2.91 -0.02 4.07 16 17 C 0.02 0.86 5.49 84.86 0.47 1.33 16 18 N -0.91 -54.12 13.22 21.65 0.29 -53.84 16 19 Si 0.99 43.47 29.55 68.60 2.03 45.50 16 20 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 S 0.34 5.71 22.78 -56.49 -1.29 4.43 16 24 H 0.10 0.54 7.37 -2.39 -0.02 0.52 16 25 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 26 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.22 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.07 2.61 8.14 -2.40 -0.02 2.59 16 34 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -70.21 341.27 4.08 -66.13 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 1.13 Total: 4.14 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.31 Total: -15.06 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -1.59 Total: -62.13 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.30 Total: -32.13 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -3.94 SS G_CDS: -2.50 Total: -6.44 kcal Total: -70.21 4.08 -66.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840693143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.422 kcal (2) G-P(sol) polarization free energy of solvation -70.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds