Wall clock time and date at job start Tue Mar 31 2020 10:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86805 * 119.99737 * 2 1 4 4 H 1.48493 * 109.47140 * 239.99973 * 3 2 1 5 5 H 1.48501 * 109.46843 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46999 * 119.99845 * 3 2 1 7 7 C 1.38949 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00202 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99723 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99580 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00355 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99566 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 10 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 C 1.50693 * 109.47486 * 179.72204 * 16 14 13 18 18 C 1.38264 * 119.96827 * 269.72419 * 17 16 14 19 19 C 1.38194 * 120.05219 * 179.72355 * 18 17 16 20 20 C 1.38446 * 119.98386 * 0.52962 * 19 18 17 21 21 F 1.35105 * 120.03125 * 179.72440 * 20 19 18 22 22 C 1.38554 * 119.94053 * 359.74188 * 20 19 18 23 23 Cl 1.73599 * 120.02547 * 180.02562 * 22 20 19 24 24 C 1.38218 * 119.97267 * 89.99718 * 17 16 14 25 25 H 0.96995 * 120.00385 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99596 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47259 * 60.00127 * 12 10 9 28 28 H 1.09004 * 109.46840 * 299.99907 * 12 10 9 29 29 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 30 30 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 31 31 H 1.08004 * 119.98122 * 0.02562 * 18 17 16 32 32 H 1.08004 * 120.01259 * 180.24929 * 19 18 17 33 33 H 1.07996 * 119.99043 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5577 0.0005 11 8 3.2104 -3.5577 0.0010 12 6 1.2441 -4.8629 0.0000 13 8 2.1877 -5.9665 0.0007 14 6 1.6748 -7.2069 -0.0002 15 8 0.4769 -7.3652 -0.0012 16 6 2.5927 -8.4019 0.0067 17 6 1.7721 -9.6658 0.0110 18 6 1.3988 -10.2428 1.2107 19 6 0.6414 -11.3987 1.2167 20 6 0.2652 -11.9856 0.0205 21 9 -0.4706 -13.1187 0.0253 22 6 0.6443 -11.4101 -1.1815 23 17 0.1733 -12.1438 -2.6826 24 6 1.3980 -10.2503 -1.1844 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3906 -0.0002 27 1 0.6178 -4.9205 -0.8903 28 1 0.6171 -4.9208 0.8897 29 1 3.2230 -8.3810 -0.8824 30 1 3.2202 -8.3731 0.8975 31 1 1.6952 -9.7873 2.1440 32 1 0.3467 -11.8467 2.1542 33 1 1.6943 -9.8013 -2.1209 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860027770.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:26 Heat of formation + Delta-G solvation = -150.622587 kcal Electronic energy + Delta-G solvation = -22171.028114 eV Core-core repulsion = 18137.329043 eV Total energy + Delta-G solvation = -4033.699071 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.051 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.29913 -40.64287 -39.44056 -38.14266 -36.93937 -36.14843 -34.03249 -33.09468 -31.41507 -31.37951 -29.00367 -27.48425 -24.64469 -23.62254 -22.68046 -20.76881 -19.61676 -18.19379 -18.10535 -17.66899 -17.22512 -16.68510 -16.35553 -16.10807 -15.92962 -15.49575 -14.64847 -14.54143 -14.49503 -14.20479 -13.96825 -13.78396 -13.34552 -12.91807 -12.76894 -12.50414 -12.12214 -12.05126 -11.77254 -11.72843 -11.64253 -11.29447 -11.13500 -10.53001 -10.51022 -10.46974 -10.31362 -9.62334 -9.40244 -9.00645 -8.55689 -8.11291 -6.52483 -3.94830 0.50887 0.65819 1.63350 2.21861 2.56269 3.12894 3.13452 3.21281 3.26373 3.68197 3.70567 4.08175 4.09694 4.21135 4.60503 4.63370 4.67288 4.87838 5.04696 5.12244 5.16764 5.24329 5.39497 5.47302 5.53053 5.63713 5.65506 5.92668 6.01830 6.24575 6.56874 7.45053 7.76857 7.92305 8.45405 9.04206 9.36290 9.85981 10.64609 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.033377 B = 0.002131 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.700814 B =13133.970886 C =13301.325245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.437 3.563 11 O -0.577 6.577 12 C 0.061 3.939 13 O -0.325 6.325 14 C 0.457 3.543 15 O -0.506 6.506 16 C -0.073 4.073 17 C -0.071 4.071 18 C -0.068 4.068 19 C -0.140 4.140 20 C 0.110 3.890 21 F -0.128 7.128 22 C -0.073 4.073 23 Cl -0.050 7.050 24 C -0.065 4.065 25 H 0.275 0.725 26 H 0.395 0.605 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 -22.885 0.351 22.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.222 3.778 11 O -0.461 6.461 12 C -0.016 4.016 13 O -0.239 6.239 14 C 0.299 3.701 15 O -0.395 6.395 16 C -0.111 4.111 17 C -0.071 4.071 18 C -0.086 4.086 19 C -0.159 4.159 20 C 0.090 3.910 21 F -0.106 7.106 22 C -0.100 4.100 23 Cl -0.021 7.021 24 C -0.084 4.084 25 H 0.085 0.915 26 H 0.229 0.771 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.855 -22.831 0.211 22.848 hybrid contribution -0.712 0.616 -0.166 0.956 sum 0.143 -22.215 0.045 22.216 Atomic orbital electron populations 1.69602 1.06014 1.28650 1.49483 1.25319 0.95686 0.99895 0.96821 0.85853 0.78756 0.80044 0.79212 1.19727 1.20859 1.19733 1.19677 0.93455 0.81754 1.48383 0.87644 1.41707 1.09383 1.04105 1.63720 1.19312 0.88333 0.84071 0.86078 1.90559 1.13403 1.86783 1.55348 1.22761 0.90807 0.84519 1.03537 1.86540 1.40384 1.14113 1.82879 1.23468 0.88589 0.84878 0.73117 1.90698 1.16723 1.86803 1.45233 1.20264 0.96566 0.86426 1.07813 1.19307 0.99296 0.95713 0.92817 1.21033 0.95270 0.93957 0.98317 1.21105 1.00581 0.97382 0.96806 1.17439 0.95442 0.85081 0.93035 1.91544 1.74259 1.47534 1.97264 1.20912 1.04336 0.97963 0.86817 1.98395 1.90891 1.82115 1.30667 1.20857 0.95551 0.92700 0.99266 0.91532 0.77145 0.89513 0.89521 0.86022 0.85878 0.84007 0.83513 0.83729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.81 13.05 55.50 0.72 -23.09 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.71 5.29 -10.97 -0.06 -13.77 16 10 C 0.44 10.27 7.86 -10.99 -0.09 10.18 16 11 O -0.58 -15.64 16.08 -14.11 -0.23 -15.86 16 12 C 0.06 1.12 5.94 36.01 0.21 1.33 16 13 O -0.32 -5.56 9.75 -45.90 -0.45 -6.01 16 14 C 0.46 6.30 7.95 36.00 0.29 6.59 16 15 O -0.51 -8.13 15.78 -18.76 -0.30 -8.43 16 16 C -0.07 -0.64 5.94 -29.04 -0.17 -0.81 16 17 C -0.07 -0.64 4.37 -104.62 -0.46 -1.09 16 18 C -0.07 -0.54 9.70 -39.59 -0.38 -0.93 16 19 C -0.14 -1.14 10.03 -39.52 -0.40 -1.54 16 20 C 0.11 1.09 7.28 -39.39 -0.29 0.81 16 21 F -0.13 -1.35 16.84 2.25 0.04 -1.31 16 22 C -0.07 -0.74 6.33 -39.44 -0.25 -0.98 16 23 Cl -0.05 -0.50 28.62 -51.86 -1.48 -1.98 16 24 C -0.07 -0.61 9.48 -39.56 -0.38 -0.98 16 25 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.39 9.31 7.90 -40.82 -0.32 8.98 16 27 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 28 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 29 H 0.12 0.83 8.09 -51.93 -0.42 0.41 16 30 H 0.12 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 32 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 326.32 15.07 4.92 4.92 Total: -1.00 -32.69 326.32 -6.79 -39.48 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -2.79 Total: 5.91 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -2.15 Total: 4.73 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.67 Total: -36.86 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.97 Total: -30.30 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.69 -6.79 -39.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860027770.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.144 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds