Wall clock time and date at job start Tue Mar 31 2020 10:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86805 * 119.99737 * 2 1 4 4 H 1.48493 * 109.47140 * 239.99973 * 3 2 1 5 5 H 1.48501 * 109.46843 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46999 * 119.99845 * 3 2 1 7 7 C 1.38949 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00202 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99723 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99580 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00355 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99566 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 10 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 C 1.50693 * 109.47486 * 179.72204 * 16 14 13 18 18 C 1.38264 * 119.96827 * 269.72419 * 17 16 14 19 19 C 1.38194 * 120.05219 * 179.72355 * 18 17 16 20 20 C 1.38446 * 119.98386 * 0.52962 * 19 18 17 21 21 F 1.35105 * 120.03125 * 179.72440 * 20 19 18 22 22 C 1.38554 * 119.94053 * 359.74188 * 20 19 18 23 23 Cl 1.73599 * 120.02547 * 180.02562 * 22 20 19 24 24 C 1.38218 * 119.97267 * 89.99718 * 17 16 14 25 25 H 0.96995 * 120.00385 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99596 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47259 * 60.00127 * 12 10 9 28 28 H 1.09004 * 109.46840 * 299.99907 * 12 10 9 29 29 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 30 30 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 31 31 H 1.08004 * 119.98122 * 0.02562 * 18 17 16 32 32 H 1.08004 * 120.01259 * 180.24929 * 19 18 17 33 33 H 1.07996 * 119.99043 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5577 0.0005 11 8 3.2104 -3.5577 0.0010 12 6 1.2441 -4.8629 0.0000 13 8 2.1877 -5.9665 0.0007 14 6 1.6748 -7.2069 -0.0002 15 8 0.4769 -7.3652 -0.0012 16 6 2.5927 -8.4019 0.0067 17 6 1.7721 -9.6658 0.0110 18 6 1.3988 -10.2428 1.2107 19 6 0.6414 -11.3987 1.2167 20 6 0.2652 -11.9856 0.0205 21 9 -0.4706 -13.1187 0.0253 22 6 0.6443 -11.4101 -1.1815 23 17 0.1733 -12.1438 -2.6826 24 6 1.3980 -10.2503 -1.1844 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3906 -0.0002 27 1 0.6178 -4.9205 -0.8903 28 1 0.6171 -4.9208 0.8897 29 1 3.2230 -8.3810 -0.8824 30 1 3.2202 -8.3731 0.8975 31 1 1.6952 -9.7873 2.1440 32 1 0.3467 -11.8467 2.1542 33 1 1.6943 -9.8013 -2.1209 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860027770.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:25 Heat of formation + Delta-G solvation = -169.636444 kcal Electronic energy + Delta-G solvation = -22171.852617 eV Core-core repulsion = 18137.329043 eV Total energy + Delta-G solvation = -4034.523573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.051 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.05686 -41.74551 -40.36999 -39.83615 -37.73132 -37.39217 -36.01787 -33.85161 -33.39784 -32.03892 -30.33945 -28.53372 -26.50483 -24.27954 -23.55750 -21.77715 -21.39889 -20.06249 -18.93751 -18.80746 -18.06010 -17.96827 -17.48888 -17.20141 -16.87427 -16.80533 -16.33977 -15.80817 -15.74069 -15.24535 -15.00989 -14.64184 -14.62497 -14.03902 -14.01717 -13.57995 -13.50906 -13.23851 -13.00610 -12.90865 -12.51930 -12.47940 -12.38960 -12.12607 -12.01473 -11.82826 -11.64544 -11.55694 -10.49861 -10.11141 -10.06717 -9.71760 -8.51565 -6.02267 -0.20023 0.00214 0.90856 1.15596 1.38676 1.39907 1.47722 1.57641 1.88756 2.28063 2.40899 2.99486 3.11344 3.14232 3.38960 3.59700 3.77266 3.98180 4.06312 4.12349 4.18093 4.24112 4.27882 4.57547 4.61482 4.78360 4.82795 5.00627 5.27641 5.36420 5.39471 5.62031 5.89990 6.46823 6.68384 7.03759 7.41232 7.94413 8.65203 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.033377 B = 0.002131 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.700814 B =13133.970886 C =13301.325245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.085 0.915 9 N -0.560 5.560 10 C 0.437 3.563 11 O -0.617 6.617 12 C 0.073 3.927 13 O -0.342 6.342 14 C 0.459 3.541 15 O -0.531 6.531 16 C -0.065 4.065 17 C -0.078 4.078 18 C -0.066 4.066 19 C -0.137 4.137 20 C 0.093 3.907 21 F -0.136 7.136 22 C -0.088 4.088 23 Cl -0.057 7.057 24 C -0.072 4.072 25 H 0.281 0.719 26 H 0.399 0.601 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.144 0.856 30 H 0.153 0.847 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.955 -23.055 1.048 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.103 0.897 9 N -0.197 5.197 10 C 0.223 3.777 11 O -0.504 6.504 12 C -0.005 4.005 13 O -0.258 6.258 14 C 0.303 3.697 15 O -0.420 6.420 16 C -0.101 4.101 17 C -0.078 4.078 18 C -0.084 4.084 19 C -0.156 4.156 20 C 0.073 3.927 21 F -0.115 7.115 22 C -0.115 4.115 23 Cl -0.028 7.028 24 C -0.091 4.091 25 H 0.090 0.910 26 H 0.234 0.766 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.162 0.838 30 H 0.171 0.829 31 H 0.185 0.815 32 H 0.188 0.812 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.165 -23.025 0.907 23.073 hybrid contribution -0.830 0.585 -0.369 1.080 sum 0.335 -22.441 0.538 22.450 Atomic orbital electron populations 1.69664 1.06980 1.29777 1.49240 1.26126 0.96563 1.02620 0.95696 0.84923 0.77740 0.76132 0.79183 1.19463 1.19541 1.19402 1.19688 0.92966 0.83388 1.50643 0.89662 1.41763 1.09559 1.04275 1.64102 1.20147 0.88100 0.85419 0.83995 1.90523 1.15408 1.87717 1.56720 1.22469 0.90178 0.82621 1.05205 1.86551 1.40620 1.15052 1.83545 1.24406 0.89074 0.84527 0.71677 1.90692 1.18093 1.86785 1.46441 1.20434 0.95822 0.83544 1.10336 1.19427 0.99576 0.95812 0.93031 1.21386 0.94332 0.93593 0.99057 1.21403 0.99893 0.97237 0.97055 1.17733 0.95977 0.85213 0.93766 1.91519 1.74578 1.48033 1.97336 1.21070 1.05158 0.98572 0.86728 1.98386 1.91023 1.82290 1.31113 1.21039 0.95409 0.92534 1.00078 0.90993 0.76618 0.87867 0.87638 0.83788 0.82937 0.81501 0.81248 0.82857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.20 13.05 21.66 0.28 -47.92 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 1.00 41.37 29.55 68.60 2.03 43.40 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.34 -18.62 9.68 84.04 0.81 -17.81 16 8 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.56 -28.08 5.29 -306.99 -1.62 -29.70 16 10 C 0.44 20.58 7.86 87.66 0.69 21.27 16 11 O -0.62 -33.88 16.08 15.75 0.25 -33.62 16 12 C 0.07 2.57 5.94 71.24 0.42 2.99 16 13 O -0.34 -11.19 9.75 -45.06 -0.44 -11.63 16 14 C 0.46 11.64 7.95 71.23 0.57 12.21 16 15 O -0.53 -16.07 15.78 21.94 0.35 -15.72 16 16 C -0.06 -0.94 5.94 29.10 0.17 -0.76 16 17 C -0.08 -1.21 4.37 -19.86 -0.09 -1.29 16 18 C -0.07 -0.87 9.70 22.27 0.22 -0.65 16 19 C -0.14 -1.95 10.03 22.31 0.22 -1.72 16 20 C 0.09 1.76 7.28 22.39 0.16 1.92 16 21 F -0.14 -2.82 16.84 44.97 0.76 -2.06 16 22 C -0.09 -1.71 6.33 22.36 0.14 -1.57 16 23 Cl -0.06 -1.13 28.62 -2.72 -0.08 -1.20 16 24 C -0.07 -1.24 9.48 22.28 0.21 -1.03 16 25 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 26 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 27 H 0.10 3.31 8.13 -2.39 -0.02 3.30 16 28 H 0.11 3.34 8.13 -2.38 -0.02 3.32 16 29 H 0.14 1.50 8.09 -2.38 -0.02 1.48 16 30 H 0.15 1.36 8.08 -2.39 -0.02 1.34 16 31 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 33 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -70.78 326.32 5.98 -64.80 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.45 Total: 20.14 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 4.00 Total: 13.52 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -1.34 Total: -77.62 kcal Atomic # 8 Polarization: -61.13 SS G_CDS: 0.16 Total: -60.97 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.76 Total: -2.06 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.20 kcal Total: -70.78 5.98 -64.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860027770.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.837 kcal (2) G-P(sol) polarization free energy of solvation -70.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds