Wall clock time and date at job start Tue Mar 31 2020 10:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86805 * 119.99748 * 2 1 4 4 H 1.48499 * 109.47084 * 240.00134 * 3 2 1 5 5 H 1.48494 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47096 * 120.00137 * 3 2 1 7 7 C 1.38802 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99968 * 179.97438 * 7 2 1 9 9 S 1.76193 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99964 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46904 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00283 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99638 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99927 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46933 * 179.97438 * 14 13 11 16 16 O 1.21245 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.47179 * 119.99776 * 179.97438 * 15 14 13 18 18 C 1.39833 * 120.14610 * 359.72160 * 17 15 14 19 19 C 1.38128 * 119.84533 * 180.29808 * 18 17 15 20 20 F 1.35105 * 119.92459 * 180.02562 * 19 18 17 21 21 C 1.38577 * 120.15134 * 359.97438 * 19 18 17 22 22 C 1.38576 * 120.30019 * 0.02562 * 21 19 18 23 23 F 1.35097 * 119.92726 * 179.97438 * 22 21 19 24 24 C 1.38128 * 120.14838 * 0.02562 * 22 21 19 25 25 H 0.96991 * 120.00362 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.46968 * 59.99995 * 10 9 7 27 27 H 1.08999 * 109.47209 * 299.99561 * 10 9 7 28 28 H 0.97000 * 120.00068 * 359.97438 * 13 11 10 29 29 H 1.08998 * 109.47061 * 59.99055 * 14 13 11 30 30 H 1.08999 * 109.46549 * 299.99278 * 14 13 11 31 31 H 1.07994 * 120.07459 * 0.25296 * 18 17 15 32 32 H 1.07996 * 119.84952 * 179.97438 * 21 19 18 33 33 H 1.08006 * 120.07728 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5161 -3.8913 -0.0021 11 6 1.9876 -5.3027 -0.0030 12 8 0.7913 -5.5023 -0.0030 13 7 2.8444 -6.3431 -0.0037 14 6 2.3307 -7.7151 -0.0051 15 6 3.4852 -8.6837 -0.0063 16 8 4.6245 -8.2689 -0.0065 17 6 3.2297 -10.1331 -0.0073 18 6 1.9170 -10.6148 -0.0012 19 6 1.6844 -11.9763 0.0041 20 9 0.4167 -12.4434 0.0095 21 6 2.7483 -12.8642 0.0029 22 6 4.0517 -12.3936 -0.0031 23 9 5.0832 -13.2660 -0.0038 24 6 4.2986 -11.0346 -0.0074 25 1 -0.4850 0.8399 0.0004 26 1 3.1253 -3.7316 0.8874 27 1 3.1239 -3.7309 -0.8925 28 1 3.8012 -6.1834 -0.0040 29 1 1.7222 -7.8743 -0.8953 30 1 1.7220 -7.8759 0.8846 31 1 1.0870 -9.9238 0.0001 32 1 2.5608 -13.9278 0.0075 33 1 5.3149 -10.6691 -0.0117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887267998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:58 Heat of formation + Delta-G solvation = -134.497814 kcal Electronic energy + Delta-G solvation = -21732.054753 eV Core-core repulsion = 17713.471401 eV Total energy + Delta-G solvation = -4018.583352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.60204 -49.56512 -40.77701 -39.16653 -38.40851 -34.43434 -32.44135 -32.34145 -31.11681 -30.01521 -27.57077 -25.50080 -24.60980 -23.33550 -20.87319 -20.54583 -18.58705 -18.03302 -17.68469 -17.11740 -16.66664 -16.64209 -16.49674 -15.99174 -15.97692 -15.87743 -15.56049 -14.90205 -14.81228 -14.76058 -14.43528 -13.87624 -13.33866 -13.16731 -13.04291 -12.64463 -12.58002 -12.51364 -12.49475 -11.86920 -11.06154 -11.04231 -10.79230 -10.49365 -9.84365 -9.82079 -9.56517 -9.46213 -9.13474 -9.05426 -8.27387 -6.52312 -6.22845 -3.93839 -0.28827 0.28668 1.57640 2.71663 2.76891 2.97565 3.08106 3.23439 3.25970 3.28893 3.41665 3.63273 3.69142 4.04063 4.11441 4.19363 4.30800 4.43378 4.84488 5.00776 5.04514 5.07849 5.12491 5.16870 5.24125 5.30574 5.36225 5.63406 5.85850 6.00236 6.12035 6.36253 6.79489 7.55763 7.58937 8.34091 8.46618 9.22535 10.84533 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.034191 B = 0.002125 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.727765 B =13173.423897 C =13971.697791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.536 3.464 12 O -0.516 6.516 13 N -0.735 5.735 14 C 0.076 3.924 15 C 0.396 3.604 16 O -0.432 6.432 17 C -0.106 4.106 18 C -0.116 4.116 19 C 0.125 3.875 20 F -0.124 7.124 21 C -0.162 4.162 22 C 0.122 3.878 23 F -0.126 7.126 24 C -0.106 4.106 25 H 0.269 0.731 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.408 0.592 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.664 -26.570 -0.008 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.323 3.677 12 O -0.390 6.390 13 N -0.393 5.393 14 C -0.049 4.049 15 C 0.272 3.728 16 O -0.305 6.305 17 C -0.108 4.108 18 C -0.136 4.136 19 C 0.105 3.895 20 F -0.102 7.102 21 C -0.182 4.182 22 C 0.102 3.898 23 F -0.104 7.104 24 C -0.125 4.125 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.245 0.755 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.177 0.823 32 H 0.173 0.827 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.092 -26.614 -0.006 27.302 hybrid contribution 2.296 0.876 -0.001 2.457 sum 8.388 -25.738 -0.007 27.070 Atomic orbital electron populations 1.69998 1.05948 1.27610 1.46753 1.24992 0.95039 0.99039 0.94490 0.86216 0.79231 0.81181 0.78834 1.19917 1.20816 1.19923 1.22827 0.94917 0.91590 1.59123 0.90901 1.85362 1.04758 0.96340 1.96758 1.23527 1.06733 0.94837 1.05260 1.20353 0.86340 0.86203 0.74845 1.90709 1.15249 1.85552 1.47468 1.45833 1.11124 1.03967 1.78348 1.21509 0.95508 0.82475 1.05415 1.22473 0.90436 0.88295 0.71561 1.90562 1.24596 1.80373 1.34991 1.19964 0.92638 0.94907 1.03304 1.21615 0.97795 0.94474 0.99670 1.17095 0.79244 0.91552 1.01583 1.91595 1.35995 1.89037 1.93564 1.21336 0.90700 1.02098 1.04018 1.17091 0.83822 0.86897 1.01950 1.91577 1.56736 1.68449 1.93642 1.21460 1.01441 0.90730 0.98858 0.92104 0.88956 0.88962 0.75498 0.87421 0.87419 0.82325 0.82739 0.82632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 11 C 0.54 9.54 7.85 -10.98 -0.09 9.45 16 12 O -0.52 -10.92 15.86 5.56 0.09 -10.83 16 13 N -0.73 -9.54 5.53 -61.47 -0.34 -9.88 16 14 C 0.08 0.74 4.77 -5.19 -0.02 0.71 16 15 C 0.40 3.44 7.19 -30.68 -0.22 3.22 16 16 O -0.43 -4.76 15.66 5.59 0.09 -4.67 16 17 C -0.11 -0.75 5.87 -105.08 -0.62 -1.37 16 18 C -0.12 -0.71 9.45 -39.03 -0.37 -1.08 16 19 C 0.12 0.80 7.29 -39.50 -0.29 0.51 16 20 F -0.12 -0.91 17.26 2.25 0.04 -0.87 16 21 C -0.16 -0.93 10.00 -39.33 -0.39 -1.33 16 22 C 0.12 0.81 7.29 -39.50 -0.29 0.52 16 23 F -0.13 -0.93 17.26 2.25 0.04 -0.89 16 24 C -0.11 -0.74 9.57 -39.03 -0.37 -1.11 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 27 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 28 H 0.41 4.77 7.44 -40.82 -0.30 4.47 16 29 H 0.11 0.95 8.09 -51.93 -0.42 0.53 16 30 H 0.11 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.16 0.73 7.05 -52.49 -0.37 0.36 16 32 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.16 1.04 7.65 -52.48 -0.40 0.64 16 LS Contribution 325.41 15.07 4.90 4.90 Total: -1.00 -34.10 325.41 -6.65 -40.75 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -2.73 Total: 0.33 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.24 Total: -6.12 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.39 Total: -35.08 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.18 Total: -15.50 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.08 Total: -1.76 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.10 -6.65 -40.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887267998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.744 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds