Wall clock time and date at job start Tue Mar 31 2020 11:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35920 * 116.99881 * 2 1 4 4 C 1.38858 * 120.06164 * 269.97353 * 3 2 1 5 5 Cl 1.73603 * 120.03569 * 0.05438 * 4 3 2 6 6 C 1.38212 * 119.92403 * 180.02562 * 4 3 2 7 7 C 1.38289 * 120.04549 * 0.02970 * 6 4 3 8 8 C 1.38240 * 120.11607 * 359.67486 * 7 6 4 9 9 C 1.38201 * 120.07445 * 0.60136 * 8 7 6 10 10 C 1.50699 * 120.01759 * 179.69985 * 9 8 7 11 11 N 1.46499 * 109.46700 * 259.72029 * 10 9 8 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99774 * 179.72962 * 12 11 10 15 15 S 1.81008 * 109.46759 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99946 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99996 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00252 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99702 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00159 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47239 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47003 * 120.00084 * 20 18 16 23 23 H 1.48500 * 109.46787 * 239.99933 * 20 18 16 24 24 H 1.09005 * 109.46933 * 59.99816 * 1 2 3 25 25 H 1.08995 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46685 * 300.00059 * 1 2 3 27 27 H 1.08000 * 119.97974 * 180.02562 * 6 4 3 28 28 H 1.07994 * 119.94454 * 179.97438 * 7 6 4 29 29 H 1.07999 * 119.96089 * 180.31878 * 8 7 6 30 30 H 1.08998 * 109.46743 * 139.72505 * 10 9 8 31 31 H 1.08994 * 109.47542 * 19.72364 * 10 9 8 32 32 H 0.97005 * 120.00261 * 0.02562 * 11 10 9 33 33 H 1.09001 * 109.46809 * 299.99238 * 14 12 11 34 34 H 1.08993 * 109.47525 * 59.99679 * 14 12 11 35 35 H 0.97000 * 119.99806 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 2.3624 1.8306 -1.2018 5 17 1.9688 1.0598 -2.7067 6 6 2.9903 3.0618 -1.1985 7 6 3.3039 3.6759 0.0003 8 6 2.9843 3.0636 1.1977 9 6 2.3616 1.8298 1.2002 10 6 2.0199 1.1604 2.5063 11 7 3.0265 0.1402 2.8100 12 6 2.9251 -0.5921 3.9370 13 8 2.0003 -0.4068 4.6994 14 6 3.9572 -1.6457 4.2464 15 16 3.5469 -2.4498 5.8153 16 6 4.8767 -3.6005 5.9263 17 1 5.6237 -3.6392 5.1473 18 6 4.9642 -4.4572 7.0148 19 7 4.0539 -4.4096 7.9645 20 14 6.3743 -5.6766 7.1328 21 1 7.2560 -5.5300 5.9469 22 1 7.1560 -5.4114 8.3672 23 1 5.8315 -7.0581 7.1777 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8899 27 1 3.2363 3.5447 -2.1327 28 1 3.7949 4.6378 0.0009 29 1 3.2258 3.5478 2.1324 30 1 1.0392 0.6912 2.4284 31 1 2.0047 1.9042 3.3028 32 1 3.7661 -0.0083 2.2001 33 1 3.9676 -2.3891 3.4494 34 1 4.9400 -1.1805 4.3222 35 1 4.1148 -5.0086 8.7251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887431757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:13 Heat of formation + Delta-G solvation = -56.495541 kcal Electronic energy + Delta-G solvation = -20683.511813 eV Core-core repulsion = 17220.107573 eV Total energy + Delta-G solvation = -3463.404240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66826 -38.95256 -37.70292 -36.85751 -34.74012 -32.40714 -31.71734 -30.60736 -29.27219 -27.34550 -25.85441 -25.34289 -22.91997 -21.94784 -20.36177 -18.31868 -17.82794 -16.98688 -16.73332 -16.29285 -15.80464 -15.62247 -15.01563 -14.92647 -14.78393 -14.27076 -13.92422 -13.67618 -13.43380 -13.20224 -12.95752 -12.62341 -12.52602 -12.04985 -11.92863 -11.80386 -11.62586 -11.25742 -11.05230 -10.99558 -10.74074 -10.30220 -9.78974 -9.61714 -9.12104 -9.05861 -9.03897 -8.85910 -8.20720 -6.47373 -6.19805 -3.89846 0.59427 0.62557 1.73804 2.84661 3.12074 3.13742 3.23309 3.30369 3.35052 3.47066 3.86547 4.17200 4.22598 4.43070 4.73925 4.76288 4.87734 4.99157 5.03336 5.10172 5.15515 5.21854 5.37775 5.39230 5.59658 5.63252 5.78025 5.83779 5.92785 6.00682 6.14064 6.18848 6.59215 7.05786 7.62326 7.73371 8.37846 8.63018 9.25827 10.87708 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.002625 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.644606 B =10663.792319 C =10888.360457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.123 3.877 4 C -0.060 4.060 5 Cl -0.057 7.057 6 C -0.095 4.095 7 C -0.115 4.115 8 C -0.083 4.083 9 C -0.112 4.112 10 C 0.169 3.831 11 N -0.729 5.729 12 C 0.534 3.466 13 O -0.519 6.519 14 C -0.152 4.152 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.048 0.952 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.138 0.862 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.400 0.600 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 17.032 -21.138 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.239 6.239 3 C 0.077 3.923 4 C -0.087 4.087 5 Cl -0.028 7.028 6 C -0.114 4.114 7 C -0.133 4.133 8 C -0.102 4.102 9 C -0.113 4.113 10 C 0.046 3.954 11 N -0.384 5.384 12 C 0.321 3.679 13 O -0.394 6.394 14 C -0.303 4.303 15 S 0.166 5.834 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.066 0.934 25 H 0.118 0.882 26 H 0.069 0.931 27 H 0.156 0.844 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.234 0.766 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.329 17.012 -19.810 26.650 hybrid contribution 2.144 -0.955 -1.356 2.711 sum -3.185 16.057 -21.166 26.757 Atomic orbital electron populations 1.23057 0.77996 1.04055 1.00725 1.86106 1.20346 1.23318 1.94103 1.18327 0.97136 0.86565 0.90230 1.21401 1.04870 0.95312 0.87109 1.98380 1.92703 1.81128 1.30592 1.21060 0.97678 0.92994 0.99625 1.21169 1.00171 1.00590 0.91377 1.21209 0.96014 0.93814 0.99114 1.20291 1.01432 0.95350 0.94243 1.19966 0.93005 0.90755 0.91709 1.45961 1.29068 1.38744 1.24627 1.20308 0.86401 0.81229 0.80004 1.90698 1.33538 1.67416 1.47731 1.23523 1.00254 0.99497 1.07003 1.85369 1.37068 1.43129 1.17836 1.22916 1.12263 1.22509 1.10530 0.90869 1.24995 0.96870 0.97055 0.94710 1.70032 1.33475 1.37208 1.09630 0.86113 0.81025 0.80157 0.78187 1.19602 1.20588 1.20583 0.93370 0.88155 0.93085 0.84431 0.84468 0.84403 0.90678 0.90422 0.76620 0.89118 0.89234 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.85 101.05 1.10 1.42 16 2 O -0.32 -3.72 9.20 -19.49 -0.18 -3.90 16 3 C 0.12 1.29 5.69 -39.19 -0.22 1.06 16 4 C -0.06 -0.56 6.33 -39.36 -0.25 -0.81 16 5 Cl -0.06 -0.53 28.51 -51.86 -1.48 -2.01 16 6 C -0.09 -0.69 9.83 -39.57 -0.39 -1.08 16 7 C -0.11 -0.74 10.04 -39.56 -0.40 -1.14 16 8 C -0.08 -0.64 9.66 -39.59 -0.38 -1.02 16 9 C -0.11 -1.10 5.26 -104.48 -0.55 -1.65 16 10 C 0.17 2.04 5.46 -5.19 -0.03 2.01 16 11 N -0.73 -10.25 5.55 -61.48 -0.34 -10.59 16 12 C 0.53 10.12 7.85 -10.98 -0.09 10.03 16 13 O -0.52 -11.79 15.86 5.56 0.09 -11.70 16 14 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.53 -15.35 9.50 30.94 0.29 -15.05 16 17 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 20 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.44 7.12 -51.93 -0.37 0.07 16 27 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 28 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 29 H 0.14 0.86 8.03 -52.49 -0.42 0.44 16 30 H 0.08 0.97 6.56 -51.93 -0.34 0.63 16 31 H 0.08 0.92 8.00 -51.93 -0.42 0.50 16 32 H 0.40 4.85 8.46 -40.82 -0.35 4.51 16 33 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 34 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -34.71 338.89 -8.07 -42.78 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -3.97 Total: 0.36 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.79 Total: -7.14 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.39 Total: -36.17 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.09 Total: -15.60 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.48 Total: -2.01 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.71 -8.07 -42.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887431757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.712 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds