Wall clock time and date at job start Tue Mar 31 2020 11:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35920 * 116.99881 * 2 1 4 4 C 1.38858 * 120.06164 * 269.97353 * 3 2 1 5 5 Cl 1.73603 * 120.03569 * 0.05438 * 4 3 2 6 6 C 1.38212 * 119.92403 * 180.02562 * 4 3 2 7 7 C 1.38289 * 120.04549 * 0.02970 * 6 4 3 8 8 C 1.38240 * 120.11607 * 359.67486 * 7 6 4 9 9 C 1.38201 * 120.07445 * 0.60136 * 8 7 6 10 10 C 1.50699 * 120.01759 * 179.69985 * 9 8 7 11 11 N 1.46499 * 109.46700 * 259.72029 * 10 9 8 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99774 * 179.72962 * 12 11 10 15 15 S 1.81008 * 109.46759 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99946 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99996 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00252 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99702 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00159 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47239 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47003 * 120.00084 * 20 18 16 23 23 H 1.48500 * 109.46787 * 239.99933 * 20 18 16 24 24 H 1.09005 * 109.46933 * 59.99816 * 1 2 3 25 25 H 1.08995 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46685 * 300.00059 * 1 2 3 27 27 H 1.08000 * 119.97974 * 180.02562 * 6 4 3 28 28 H 1.07994 * 119.94454 * 179.97438 * 7 6 4 29 29 H 1.07999 * 119.96089 * 180.31878 * 8 7 6 30 30 H 1.08998 * 109.46743 * 139.72505 * 10 9 8 31 31 H 1.08994 * 109.47542 * 19.72364 * 10 9 8 32 32 H 0.97005 * 120.00261 * 0.02562 * 11 10 9 33 33 H 1.09001 * 109.46809 * 299.99238 * 14 12 11 34 34 H 1.08993 * 109.47525 * 59.99679 * 14 12 11 35 35 H 0.97000 * 119.99806 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 2.3624 1.8306 -1.2018 5 17 1.9688 1.0598 -2.7067 6 6 2.9903 3.0618 -1.1985 7 6 3.3039 3.6759 0.0003 8 6 2.9843 3.0636 1.1977 9 6 2.3616 1.8298 1.2002 10 6 2.0199 1.1604 2.5063 11 7 3.0265 0.1402 2.8100 12 6 2.9251 -0.5921 3.9370 13 8 2.0003 -0.4068 4.6994 14 6 3.9572 -1.6457 4.2464 15 16 3.5469 -2.4498 5.8153 16 6 4.8767 -3.6005 5.9263 17 1 5.6237 -3.6392 5.1473 18 6 4.9642 -4.4572 7.0148 19 7 4.0539 -4.4096 7.9645 20 14 6.3743 -5.6766 7.1328 21 1 7.2560 -5.5300 5.9469 22 1 7.1560 -5.4114 8.3672 23 1 5.8315 -7.0581 7.1777 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8899 27 1 3.2363 3.5447 -2.1327 28 1 3.7949 4.6378 0.0009 29 1 3.2258 3.5478 2.1324 30 1 1.0392 0.6912 2.4284 31 1 2.0047 1.9042 3.3028 32 1 3.7661 -0.0083 2.2001 33 1 3.9676 -2.3891 3.4494 34 1 4.9400 -1.1805 4.3222 35 1 4.1148 -5.0086 8.7251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887431757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:12 Heat of formation + Delta-G solvation = -79.861521 kcal Electronic energy + Delta-G solvation = -20684.525038 eV Core-core repulsion = 17220.107573 eV Total energy + Delta-G solvation = -3464.417465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.44539 -40.35962 -38.40573 -37.56071 -35.92959 -34.58034 -32.74166 -31.26258 -30.66564 -28.14435 -27.68198 -26.63536 -23.57199 -22.69370 -21.80602 -19.89470 -18.95287 -17.94794 -17.72328 -17.52920 -16.87984 -16.66792 -16.61654 -16.45553 -15.78936 -15.52374 -14.96201 -14.80467 -14.46769 -14.44754 -14.16196 -14.00688 -13.38693 -13.16766 -13.15541 -12.90611 -12.72314 -12.65934 -12.53593 -12.37731 -11.94372 -11.71120 -11.15391 -11.10274 -11.00403 -10.27837 -10.16424 -9.90605 -9.68039 -8.65955 -8.34506 -6.12234 -0.06229 -0.01076 1.07333 1.28049 1.41798 1.47664 1.59050 1.60790 2.17710 2.27579 2.46160 2.81413 2.99662 3.32947 3.41150 3.81103 3.97355 4.10691 4.17446 4.27965 4.28774 4.30827 4.35119 4.42634 4.51294 4.61129 4.68020 4.81196 5.06971 5.23235 5.31870 5.37010 5.42728 5.58801 6.20582 6.33129 6.45830 7.07002 7.20448 8.74991 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.002625 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.644606 B =10663.792319 C =10888.360457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.344 6.344 3 C 0.107 3.893 4 C -0.074 4.074 5 Cl -0.063 7.063 6 C -0.088 4.088 7 C -0.104 4.104 8 C -0.079 4.079 9 C -0.123 4.123 10 C 0.171 3.829 11 N -0.706 5.706 12 C 0.537 3.463 13 O -0.563 6.563 14 C -0.129 4.129 15 S -0.147 6.147 16 C -0.546 4.546 17 H 0.081 0.919 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.274 1.274 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.050 0.950 27 H 0.160 0.840 28 H 0.171 0.829 29 H 0.155 0.845 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.412 0.588 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.841 18.298 -22.946 29.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.261 6.261 3 C 0.062 3.938 4 C -0.101 4.101 5 Cl -0.034 7.034 6 C -0.107 4.107 7 C -0.122 4.122 8 C -0.098 4.098 9 C -0.124 4.124 10 C 0.048 3.952 11 N -0.359 5.359 12 C 0.323 3.677 13 O -0.442 6.442 14 C -0.281 4.281 15 S 0.080 5.920 16 C -0.694 4.694 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.181 1.181 22 H -0.198 1.198 23 H -0.199 1.199 24 H 0.076 0.924 25 H 0.123 0.877 26 H 0.068 0.932 27 H 0.178 0.822 28 H 0.189 0.811 29 H 0.173 0.827 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.248 0.752 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.417 18.307 -21.674 28.575 hybrid contribution 1.522 -1.205 -0.922 2.149 sum -1.895 17.101 -22.595 28.401 Atomic orbital electron populations 1.23146 0.77288 1.04530 1.01139 1.86059 1.21312 1.24439 1.94293 1.18496 0.97785 0.86591 0.90958 1.21547 1.05833 0.96188 0.86532 1.98375 1.92852 1.81440 1.30774 1.21410 0.96215 0.91991 1.01087 1.21537 0.98956 1.01435 0.90273 1.21460 0.94910 0.92807 1.00584 1.20085 1.03301 0.96373 0.92638 1.20012 0.91766 0.90088 0.93343 1.45745 1.29504 1.37779 1.22853 1.20006 0.85435 0.81318 0.80894 1.90686 1.35092 1.68825 1.49571 1.23363 1.01684 0.99955 1.03056 1.85519 1.38487 1.44622 1.23336 1.23238 1.12329 1.22778 1.11070 0.90044 1.26126 0.99832 0.99103 0.94080 1.70188 1.35724 1.38399 1.10427 0.84899 0.77203 0.77068 0.78733 1.18132 1.19808 1.19943 0.92427 0.87728 0.93159 0.82228 0.81127 0.82744 0.91901 0.89996 0.75176 0.87658 0.87178 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.85 113.37 1.23 1.82 16 2 O -0.34 -7.84 9.20 -92.65 -0.85 -8.69 16 3 C 0.11 2.12 5.69 22.52 0.13 2.25 16 4 C -0.07 -1.26 6.33 22.41 0.14 -1.11 16 5 Cl -0.06 -1.11 28.51 -2.72 -0.08 -1.19 16 6 C -0.09 -1.01 9.83 22.28 0.22 -0.79 16 7 C -0.10 -0.94 10.04 22.28 0.22 -0.72 16 8 C -0.08 -0.99 9.66 22.26 0.22 -0.77 16 9 C -0.12 -2.22 5.26 -19.77 -0.10 -2.32 16 10 C 0.17 3.99 5.46 85.63 0.47 4.46 16 11 N -0.71 -19.13 5.55 -466.79 -2.59 -21.72 16 12 C 0.54 20.29 7.85 87.65 0.69 20.98 16 13 O -0.56 -26.18 15.86 -3.04 -0.05 -26.23 16 14 C -0.13 -5.27 6.16 71.24 0.44 -4.83 16 15 S -0.15 -8.24 20.57 -56.49 -1.16 -9.40 16 16 C -0.55 -31.56 9.50 67.95 0.65 -30.91 16 17 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 18 C 0.01 0.76 5.49 84.86 0.47 1.23 16 19 N -0.91 -56.23 13.22 21.65 0.29 -55.95 16 20 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H 0.06 0.89 8.14 -2.38 -0.02 0.88 16 25 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.05 0.89 7.12 -2.39 -0.02 0.87 16 27 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 28 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 29 H 0.15 1.40 8.03 -2.91 -0.02 1.38 16 30 H 0.06 1.65 6.56 -2.39 -0.02 1.63 16 31 H 0.08 1.86 8.00 -2.39 -0.02 1.84 16 32 H 0.41 9.28 8.46 -92.70 -0.78 8.49 16 33 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 34 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 35 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -77.09 338.89 2.69 -74.41 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.34 Total: 13.49 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 4.76 Total: -10.73 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -2.30 Total: -77.67 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.90 Total: -34.92 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -77.09 2.69 -74.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887431757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.456 kcal (2) G-P(sol) polarization free energy of solvation -77.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds