Wall clock time and date at job start Tue Mar 31 2020 11:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 S 1.81401 * 109.46777 * 180.02562 * 15 13 12 17 17 O 1.42097 * 109.47250 * 70.94361 * 16 15 13 18 18 C 1.76206 * 102.99795 * 179.97438 * 16 15 13 19 19 C 1.38238 * 119.98623 * 269.72937 * 18 16 15 20 20 C 1.38218 * 120.01483 * 179.72892 * 19 18 16 21 21 C 1.38356 * 119.98051 * 0.53746 * 20 19 18 22 22 Cl 1.73601 * 120.01270 * 179.70703 * 21 20 19 23 23 C 1.38350 * 119.97660 * 359.73536 * 21 20 19 24 24 C 1.38215 * 119.98499 * 359.97438 * 23 21 20 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 30 30 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 31 31 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 32 32 H 1.08007 * 119.99456 * 359.97438 * 19 18 16 33 33 H 1.07992 * 120.01245 * 180.26976 * 20 19 18 34 34 H 1.08000 * 120.00801 * 180.02562 * 23 21 20 35 35 H 1.07998 * 119.99240 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 16 2.7100 0.4372 4.9763 17 8 1.3869 0.7527 5.3875 18 6 3.3099 -0.5565 6.3020 19 6 2.4204 -1.2314 7.1170 20 6 2.8906 -2.0155 8.1536 21 6 4.2514 -2.1160 8.3822 22 17 4.8425 -3.0945 9.6887 23 6 5.1409 -1.4358 7.5697 24 6 4.6697 -0.6569 6.5297 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7088 1.1611 -3.4845 29 1 2.2490 -1.6316 1.1527 30 1 1.9776 -1.5506 3.8326 31 1 3.6492 -1.1202 3.3980 32 1 1.3579 -1.1491 6.9414 33 1 2.1958 -2.5461 8.7876 34 1 6.2033 -1.5143 7.7474 35 1 5.3640 -0.1256 5.8956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900432559.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:07 Heat of formation + Delta-G solvation = -59.988962 kcal Electronic energy + Delta-G solvation = -20595.262834 eV Core-core repulsion = 17131.707108 eV Total energy + Delta-G solvation = -3463.555726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.47724 -38.90357 -36.87365 -35.76507 -34.89659 -32.49217 -31.46108 -31.16342 -30.27288 -28.02110 -25.28608 -23.25687 -23.20219 -21.41969 -19.59136 -18.53655 -17.33819 -17.15100 -16.26997 -15.91960 -15.47018 -15.43649 -14.96569 -14.75089 -14.63462 -13.99607 -13.91997 -13.72225 -13.12023 -12.78702 -12.53617 -12.43734 -12.08004 -11.96321 -11.82929 -11.58795 -11.24554 -11.13652 -11.00767 -10.79521 -10.41417 -10.31880 -10.26683 -9.44297 -9.40494 -9.26219 -9.09344 -8.59599 -8.42508 -8.01565 -6.15843 -4.25710 0.39089 0.89972 1.58954 1.73279 2.63229 3.18412 3.21244 3.22288 3.28946 3.30632 3.80034 4.07613 4.34670 4.38131 4.48204 4.92345 4.99297 5.16157 5.19249 5.21416 5.29098 5.52814 5.57925 5.60812 5.77924 5.88937 6.36589 6.78573 6.93667 7.10798 7.36949 7.47612 7.63807 7.85635 8.10468 8.54357 8.70130 8.98394 9.41597 10.90093 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.027244 B = 0.002509 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.521110 B =11157.160854 C =11736.336118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.700 5.700 13 C 0.527 3.473 14 O -0.555 6.555 15 C -0.494 4.494 16 S 1.389 4.611 17 O -0.832 6.832 18 C -0.472 4.472 19 C -0.041 4.041 20 C -0.128 4.128 21 C -0.005 4.005 22 Cl -0.069 7.069 23 C -0.130 4.130 24 C -0.029 4.029 25 H 0.092 0.908 26 H 0.026 0.974 27 H 0.016 0.984 28 H 0.265 0.735 29 H 0.391 0.609 30 H 0.111 0.889 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.739 -5.698 19.977 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.070 0.930 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.347 5.347 13 C 0.311 3.689 14 O -0.436 6.436 15 C -0.631 4.631 16 S 1.582 4.418 17 O -0.827 6.827 18 C -0.566 4.566 19 C -0.061 4.061 20 C -0.148 4.148 21 C -0.032 4.032 22 Cl -0.040 7.040 23 C -0.150 4.150 24 C -0.048 4.048 25 H 0.110 0.890 26 H 0.045 0.955 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.223 0.777 30 H 0.129 0.871 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.219 -3.901 19.967 22.767 hybrid contribution -0.855 -3.133 -0.190 3.253 sum 9.364 -7.034 19.777 22.985 Atomic orbital electron populations 1.22100 0.98429 0.99169 1.01101 1.18825 0.91113 0.94140 0.79832 0.92972 1.21197 1.32619 1.13315 0.90261 0.92031 1.24899 0.94758 0.94971 0.99091 1.69903 1.35641 1.22431 1.23970 0.86430 0.78627 0.79787 0.82133 1.20477 1.19893 1.21064 1.46516 1.64204 1.13640 1.10335 1.19371 0.78616 0.87010 0.83928 1.90710 1.52115 1.15849 1.84878 1.28217 1.08651 1.14914 1.11297 1.70438 1.00074 0.89837 0.81499 1.93080 1.38818 1.72949 1.77900 1.28546 1.00095 1.12408 1.15577 1.21202 1.00377 0.91954 0.92520 1.21184 0.93648 1.00667 0.99316 1.21165 0.94166 0.96043 0.91815 1.98386 1.88599 1.69351 1.47703 1.21218 0.99929 0.98044 0.95768 1.20895 0.93764 0.94813 0.95369 0.88968 0.95521 0.96532 0.92495 0.77683 0.87079 0.84224 0.84521 0.84796 0.84292 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.42 16 2 C 0.26 6.58 2.56 -69.09 -0.18 6.40 16 3 H 0.05 1.48 7.58 -51.92 -0.39 1.09 16 4 C -0.54 -13.89 8.73 -34.44 -0.30 -14.19 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.53 11.32 55.43 0.63 -23.91 16 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.70 -14.14 5.07 -54.93 -0.28 -14.42 16 13 C 0.53 9.96 7.81 -10.98 -0.09 9.87 16 14 O -0.55 -12.55 15.53 5.56 0.09 -12.47 16 15 C -0.49 -6.24 6.37 36.01 0.23 -6.01 16 16 S 1.39 16.52 12.69 -107.50 -1.36 15.16 16 17 O -0.83 -15.13 16.89 -35.23 -0.59 -15.72 16 18 C -0.47 -4.70 5.61 -39.58 -0.22 -4.93 16 19 C -0.04 -0.46 9.44 -39.59 -0.37 -0.83 16 20 C -0.13 -1.25 9.83 -39.55 -0.39 -1.64 16 21 C -0.01 -0.05 6.32 -39.50 -0.25 -0.30 16 22 Cl -0.07 -0.58 28.96 -51.86 -1.50 -2.08 16 23 C -0.13 -0.99 9.83 -39.55 -0.39 -1.38 16 24 C -0.03 -0.21 9.75 -39.59 -0.39 -0.60 16 25 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 6.74 8.54 -40.82 -0.35 6.39 16 30 H 0.11 1.37 8.14 -51.92 -0.42 0.95 16 31 H 0.14 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.14 1.66 7.45 -52.48 -0.39 1.27 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -35.23 334.55 -9.05 -44.28 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -3.95 Total: 4.25 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.09 Total: -15.36 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.35 Total: -38.32 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.51 Total: -28.19 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 16.52 SS G_CDS: -1.36 Total: 15.16 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.23 -9.05 -44.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900432559.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.712 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds