Wall clock time and date at job start Tue Mar 31 2020 10:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47191 * 2 1 4 4 C 1.46503 * 120.00053 * 269.99851 * 3 2 1 5 5 C 1.50698 * 109.47114 * 270.00318 * 4 3 2 6 6 H 1.08000 * 119.99717 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00282 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99558 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00111 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47382 * 89.99352 * 9 7 5 11 11 H 1.48496 * 109.47086 * 210.00005 * 9 7 5 12 12 H 1.48501 * 109.46977 * 329.99533 * 9 7 5 13 13 C 1.34773 * 120.00465 * 89.99731 * 3 2 1 14 14 O 1.21278 * 120.00441 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99697 * 359.97438 * 13 3 2 16 16 N 1.46496 * 109.47151 * 179.97438 * 15 13 3 17 17 C 1.37003 * 126.40602 * 100.00283 * 16 15 13 18 18 C 1.34626 * 106.83120 * 179.97438 * 17 16 15 19 19 N 1.34176 * 108.04620 * 0.26782 * 18 17 16 20 20 C 1.30599 * 109.25438 * 359.55470 * 19 18 17 21 21 Br 1.89101 * 125.66050 * 180.17387 * 20 19 18 22 22 H 1.09004 * 109.46915 * 60.00082 * 1 2 3 23 23 H 1.08993 * 109.47267 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47401 * 300.00573 * 1 2 3 25 25 H 1.08995 * 109.46875 * 239.99431 * 2 1 3 26 26 H 1.09001 * 109.46257 * 119.99599 * 2 1 3 27 27 H 1.09004 * 109.46706 * 29.99559 * 4 3 2 28 28 H 1.08992 * 109.47521 * 149.99840 * 4 3 2 29 29 H 0.96996 * 119.99195 * 180.02562 * 8 7 5 30 30 H 1.09007 * 109.46801 * 60.00655 * 15 13 3 31 31 H 1.08998 * 109.47391 * 300.00253 * 15 13 3 32 32 H 1.07997 * 126.57868 * 359.94485 * 17 16 15 33 33 H 1.08002 * 125.97315 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1493 2.3895 -2.8780 8 7 3.3489 3.1248 -3.6186 9 14 5.9137 2.0964 -3.4168 10 1 5.9777 0.8750 -4.2589 11 1 6.3923 3.2635 -4.2003 12 1 6.7737 1.9178 -2.2194 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9912 1.3064 2.4723 16 7 2.3092 2.2038 3.5857 17 6 1.4136 2.9274 4.3282 18 6 2.1274 3.6116 5.2418 19 7 3.4243 3.3196 5.0596 20 6 3.5405 2.4721 4.0728 21 35 5.1634 1.7472 3.4274 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 1.5818 1.6876 -2.0284 28 1 2.0956 3.1409 -1.1385 29 1 3.6749 3.5146 -4.4448 30 1 2.6212 0.4187 2.5303 31 1 0.9432 1.0126 2.5298 32 1 0.3409 2.9457 4.2040 33 1 1.7267 4.2823 5.9874 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919878692.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:28 Heat of formation + Delta-G solvation = 36.762486 kcal Electronic energy + Delta-G solvation = -18761.177797 eV Core-core repulsion = 15676.929723 eV Total energy + Delta-G solvation = -3084.248074 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.032 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.07080 -39.18957 -35.55574 -34.01882 -32.82018 -31.80000 -30.28576 -28.97665 -28.29118 -26.46942 -23.20874 -22.89715 -21.47777 -20.76022 -18.85283 -17.40650 -16.94102 -16.46785 -15.52608 -15.00681 -14.88763 -14.29989 -14.12202 -13.84982 -13.60834 -13.28691 -13.18160 -12.76253 -12.18274 -12.07100 -11.76713 -11.30260 -11.01642 -10.93392 -10.88527 -10.63114 -10.53272 -10.21239 -10.08978 -10.04889 -9.72314 -9.01828 -8.49772 -8.36879 -7.86550 -6.11130 -4.15969 1.15904 1.88370 2.72071 3.05690 3.07563 3.26144 3.33899 3.38070 3.72430 4.38876 4.61039 4.67975 4.73773 4.89284 5.16778 5.24189 5.27765 5.42427 5.53911 5.58148 5.83342 6.06613 6.08582 6.30202 6.63993 6.75843 6.92688 7.30353 7.37943 7.84350 7.88138 8.13537 8.17292 8.71831 8.90160 9.49389 10.97206 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.014908 B = 0.005821 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.754524 B = 4809.191330 C = 5874.056833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.590 5.590 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.490 3.510 14 O -0.516 6.516 15 C 0.073 3.927 16 N -0.419 5.419 17 C -0.030 4.030 18 C -0.025 4.025 19 N -0.460 5.460 20 C 0.211 3.789 21 Br 0.061 6.939 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.044 0.956 29 H 0.264 0.736 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.181 0.819 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 -8.097 14.359 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.322 5.322 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.274 3.726 14 O -0.391 6.391 15 C -0.053 4.053 16 N -0.102 5.102 17 C -0.165 4.165 18 C -0.175 4.175 19 N -0.181 5.181 20 C -0.129 4.129 21 Br 0.142 6.858 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.198 0.802 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.664 -7.408 14.253 16.476 hybrid contribution -0.163 -0.347 -0.876 0.956 sum -3.827 -7.754 13.377 15.928 Atomic orbital electron populations 1.22237 0.96489 1.01731 1.02403 1.21514 0.93709 0.84016 1.03078 1.48250 1.63327 1.13269 1.07360 1.19328 0.96567 0.93605 0.77555 1.21384 0.96744 1.32182 1.06312 0.92374 1.24919 0.97871 0.94801 0.96375 1.69925 1.35747 1.33303 1.14290 0.86513 0.84643 0.77748 0.78668 1.20581 1.21010 1.19825 1.20138 0.80138 0.87496 0.84865 1.90774 1.44530 1.17338 1.86447 1.22066 1.04829 0.93022 0.85387 1.44932 1.06132 1.34383 1.24793 1.22814 0.96714 0.99952 0.96979 1.22312 0.88597 1.04101 1.02446 1.70332 1.20210 1.12178 1.15334 1.24473 0.86231 1.03687 0.98485 1.96837 1.21251 1.81589 1.86136 0.91705 0.91808 0.93293 0.89277 0.91864 0.94723 0.93843 0.92642 0.86500 0.86019 0.80195 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.10 1.40 5.93 -4.04 -0.02 1.37 16 3 N -0.59 -11.38 2.46 -175.06 -0.43 -11.81 16 4 C 0.25 6.16 5.16 -5.19 -0.03 6.14 16 5 C -0.53 -14.45 9.39 -34.44 -0.32 -14.77 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 9 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.49 9.45 7.73 -10.98 -0.08 9.37 16 14 O -0.52 -12.62 15.86 5.56 0.09 -12.53 16 15 C 0.07 1.01 4.89 -5.19 -0.03 0.98 16 16 N -0.42 -6.44 2.31 -117.87 -0.27 -6.71 16 17 C -0.03 -0.39 11.57 -16.52 -0.19 -0.58 16 18 C -0.02 -0.35 11.86 -17.81 -0.21 -0.56 16 19 N -0.46 -8.02 11.26 -13.04 -0.15 -8.17 16 20 C 0.21 3.64 8.18 -90.24 -0.74 2.90 16 21 Br 0.06 0.99 33.64 -68.01 -2.29 -1.30 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.50 7.22 -51.93 -0.37 0.12 16 25 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 26 H 0.06 0.68 6.44 -51.93 -0.33 0.35 16 27 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 28 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.12 1.39 7.27 -51.93 -0.38 1.02 16 31 H 0.12 1.21 7.16 -51.93 -0.37 0.83 16 32 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 310.25 15.07 4.68 4.68 Total: -1.00 -34.63 310.25 -7.92 -42.55 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -3.92 Total: -2.91 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -1.34 Total: 4.97 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.11 Total: -52.06 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 35 Polarization: 0.99 SS G_CDS: -2.29 Total: -1.30 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.63 -7.92 -42.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919878692.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.315 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds