Wall clock time and date at job start Tue Mar 31 2020 10:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47191 * 2 1 4 4 C 1.46503 * 120.00053 * 269.99851 * 3 2 1 5 5 C 1.50698 * 109.47114 * 270.00318 * 4 3 2 6 6 H 1.08000 * 119.99717 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00282 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99558 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00111 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47382 * 89.99352 * 9 7 5 11 11 H 1.48496 * 109.47086 * 210.00005 * 9 7 5 12 12 H 1.48501 * 109.46977 * 329.99533 * 9 7 5 13 13 C 1.34773 * 120.00465 * 89.99731 * 3 2 1 14 14 O 1.21278 * 120.00441 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99697 * 359.97438 * 13 3 2 16 16 N 1.46496 * 109.47151 * 179.97438 * 15 13 3 17 17 C 1.37003 * 126.40602 * 100.00283 * 16 15 13 18 18 C 1.34626 * 106.83120 * 179.97438 * 17 16 15 19 19 N 1.34176 * 108.04620 * 0.26782 * 18 17 16 20 20 C 1.30599 * 109.25438 * 359.55470 * 19 18 17 21 21 Br 1.89101 * 125.66050 * 180.17387 * 20 19 18 22 22 H 1.09004 * 109.46915 * 60.00082 * 1 2 3 23 23 H 1.08993 * 109.47267 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47401 * 300.00573 * 1 2 3 25 25 H 1.08995 * 109.46875 * 239.99431 * 2 1 3 26 26 H 1.09001 * 109.46257 * 119.99599 * 2 1 3 27 27 H 1.09004 * 109.46706 * 29.99559 * 4 3 2 28 28 H 1.08992 * 109.47521 * 149.99840 * 4 3 2 29 29 H 0.96996 * 119.99195 * 180.02562 * 8 7 5 30 30 H 1.09007 * 109.46801 * 60.00655 * 15 13 3 31 31 H 1.08998 * 109.47391 * 300.00253 * 15 13 3 32 32 H 1.07997 * 126.57868 * 359.94485 * 17 16 15 33 33 H 1.08002 * 125.97315 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1493 2.3895 -2.8780 8 7 3.3489 3.1248 -3.6186 9 14 5.9137 2.0964 -3.4168 10 1 5.9777 0.8750 -4.2589 11 1 6.3923 3.2635 -4.2003 12 1 6.7737 1.9178 -2.2194 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9912 1.3064 2.4723 16 7 2.3092 2.2038 3.5857 17 6 1.4136 2.9274 4.3282 18 6 2.1274 3.6116 5.2418 19 7 3.4243 3.3196 5.0596 20 6 3.5405 2.4721 4.0728 21 35 5.1634 1.7472 3.4274 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 1.5818 1.6876 -2.0284 28 1 2.0956 3.1409 -1.1385 29 1 3.6749 3.5146 -4.4448 30 1 2.6212 0.4187 2.5303 31 1 0.9432 1.0126 2.5298 32 1 0.3409 2.9457 4.2040 33 1 1.7267 4.2823 5.9874 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919878692.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:28 Heat of formation + Delta-G solvation = 14.154620 kcal Electronic energy + Delta-G solvation = -18762.158147 eV Core-core repulsion = 15676.929723 eV Total energy + Delta-G solvation = -3085.228425 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.032 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.19214 -40.69032 -37.07807 -35.32288 -34.76099 -32.97741 -31.65817 -30.27029 -29.56948 -28.10134 -24.95548 -24.17905 -22.55694 -22.00100 -20.25357 -18.71667 -18.54431 -18.18818 -17.07219 -16.50359 -16.26100 -15.83119 -15.33425 -15.05894 -14.77465 -14.53180 -14.42260 -14.24409 -13.65091 -13.43770 -13.24207 -13.06315 -12.70591 -12.52145 -12.19358 -12.13805 -11.89842 -11.76196 -11.73653 -11.36290 -11.24302 -10.65281 -10.46821 -9.51822 -9.45968 -8.24518 -6.37806 -0.02603 0.74263 1.33969 1.37418 1.46496 1.61756 1.64241 1.97313 2.27898 2.41372 3.06273 3.43927 3.60718 3.73226 3.90259 4.17135 4.37001 4.41282 4.53523 4.63080 4.90556 4.98998 5.03154 5.06158 5.20585 5.41092 5.54633 5.60480 5.72911 5.81426 6.04214 6.62948 6.72978 6.77058 7.22623 7.37285 8.82733 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.014908 B = 0.005821 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.754524 B = 4809.191330 C = 5874.056833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 N -0.593 5.593 4 C 0.265 3.735 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.959 3.041 10 H -0.261 1.261 11 H -0.283 1.283 12 H -0.275 1.275 13 C 0.484 3.516 14 O -0.579 6.579 15 C 0.085 3.915 16 N -0.424 5.424 17 C -0.017 4.017 18 C -0.043 4.043 19 N -0.490 5.490 20 C 0.179 3.821 21 Br 0.053 6.947 22 H 0.038 0.962 23 H 0.098 0.902 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.027 0.973 28 H -0.005 1.005 29 H 0.266 0.734 30 H 0.140 0.860 31 H 0.172 0.828 32 H 0.224 0.776 33 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.172 -10.030 15.572 19.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 N -0.325 5.325 4 C 0.144 3.856 5 C -0.577 4.577 6 H 0.073 0.927 7 C -0.189 4.189 8 N -0.568 5.568 9 Si 0.784 3.216 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.271 3.729 14 O -0.458 6.458 15 C -0.041 4.041 16 N -0.108 5.108 17 C -0.151 4.151 18 C -0.191 4.191 19 N -0.212 5.212 20 C -0.160 4.160 21 Br 0.134 6.866 22 H 0.057 0.943 23 H 0.116 0.884 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.123 0.877 27 H 0.045 0.955 28 H 0.013 0.987 29 H 0.075 0.925 30 H 0.157 0.843 31 H 0.189 0.811 32 H 0.241 0.759 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.768 -9.403 15.483 18.731 hybrid contribution 0.097 0.286 -1.217 1.254 sum -4.671 -9.117 14.266 17.562 Atomic orbital electron populations 1.22183 0.94050 1.03841 1.02027 1.21901 0.95694 0.80881 1.04526 1.48219 1.63305 1.15203 1.05733 1.18707 0.95304 0.91465 0.80146 1.21685 0.97888 1.31814 1.06280 0.92740 1.25780 1.01954 0.94578 0.96612 1.70040 1.37642 1.34312 1.14780 0.85531 0.79546 0.78246 0.78251 1.18598 1.20905 1.19945 1.21065 0.78494 0.86933 0.86426 1.90745 1.47213 1.20296 1.87561 1.22176 1.08249 0.92196 0.81438 1.45115 1.05899 1.34808 1.24983 1.23598 0.98316 0.97871 0.95361 1.22946 0.87642 1.04852 1.03672 1.70270 1.22296 1.12614 1.16000 1.24538 0.86907 1.05017 0.99506 1.96789 1.22014 1.81540 1.86249 0.94297 0.88375 0.91509 0.90561 0.87748 0.95542 0.98653 0.92489 0.84284 0.81053 0.75907 0.77674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 10.24 71.98 0.74 -2.37 16 2 C 0.09 2.31 5.93 86.38 0.51 2.82 16 3 N -0.59 -22.57 2.46 -826.16 -2.03 -24.60 16 4 C 0.27 13.62 5.16 85.63 0.44 14.06 16 5 C -0.54 -30.10 9.39 25.60 0.24 -29.86 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.56 5.46 84.65 0.46 1.02 16 8 N -0.93 -55.55 13.29 21.45 0.28 -55.27 16 9 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.48 18.20 7.73 87.66 0.68 18.88 16 14 O -0.58 -28.84 15.86 -3.02 -0.05 -28.89 16 15 C 0.08 2.03 4.89 85.64 0.42 2.45 16 16 N -0.42 -11.99 2.31 -526.82 -1.22 -13.20 16 17 C -0.02 -0.40 11.57 83.06 0.96 0.56 16 18 C -0.04 -1.11 11.86 83.51 0.99 -0.12 16 19 N -0.49 -16.70 11.26 -195.16 -2.20 -18.90 16 20 C 0.18 6.01 8.18 180.22 1.47 7.48 16 21 Br 0.05 1.72 33.64 -20.37 -0.69 1.03 16 22 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 23 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.07 1.04 7.22 -2.39 -0.02 1.03 16 25 H 0.08 2.12 8.07 -2.39 -0.02 2.10 16 26 H 0.10 1.78 6.44 -2.39 -0.02 1.76 16 27 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 28 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 29 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.14 2.76 7.27 -2.38 -0.02 2.74 16 31 H 0.17 2.39 7.16 -2.39 -0.02 2.37 16 32 H 0.22 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.21 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -80.24 310.25 4.17 -76.07 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: 1.12 Total: 2.11 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 6.92 Total: 14.93 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -5.16 Total: -111.97 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.05 Total: -28.89 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 35 Polarization: 1.72 SS G_CDS: -0.69 Total: 1.03 kcal Total: -80.24 4.17 -76.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919878692.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.230 kcal (2) G-P(sol) polarization free energy of solvation -80.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds