Wall clock time and date at job start Tue Mar 31 2020 11:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37094 * 120.00254 * 2 1 4 4 H 1.07997 * 120.00615 * 171.42478 * 3 2 1 5 5 C 1.38956 * 119.99741 * 351.41515 * 3 2 1 6 6 N 1.31409 * 120.00046 * 5.44700 * 5 3 2 7 7 Si 1.86802 * 120.00235 * 185.44134 * 5 3 2 8 8 H 1.48504 * 109.46754 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46918 * 120.00081 * 7 5 3 10 10 H 1.48491 * 109.47327 * 240.00507 * 7 5 3 11 11 C 1.34786 * 120.00055 * 179.97438 * 2 1 3 12 12 O 1.21293 * 119.99758 * 185.08300 * 11 2 1 13 13 C 1.50696 * 119.99817 * 5.08869 * 11 2 1 14 14 H 1.09000 * 108.89172 * 24.01947 * 13 11 2 15 15 C 1.54284 * 108.94569 * 142.51106 * 13 11 2 16 16 S 1.83828 * 102.82851 * 145.75101 * 15 13 11 17 17 O 1.42098 * 109.80900 * 212.07981 * 16 15 13 18 18 O 1.42091 * 109.81212 * 77.76325 * 16 15 13 19 19 C 1.83822 * 94.27608 * 324.91896 * 16 15 13 20 20 C 1.52381 * 108.92637 * 265.34865 * 13 11 2 21 21 H 1.08997 * 108.92645 * 118.51580 * 20 13 11 22 22 C 1.53004 * 108.92182 * 0.02562 * 20 13 11 23 23 F 1.39899 * 109.46947 * 297.75469 * 22 20 13 24 24 F 1.39895 * 109.47104 * 57.76264 * 22 20 13 25 25 F 1.39908 * 109.46708 * 177.76251 * 22 20 13 26 26 H 1.09004 * 109.46773 * 185.13406 * 1 2 3 27 27 H 1.08995 * 109.47361 * 305.13487 * 1 2 3 28 28 H 1.08998 * 109.47234 * 65.13734 * 1 2 3 29 29 H 0.96996 * 120.00341 * 179.97438 * 6 5 3 30 30 H 1.08998 * 110.71525 * 27.43880 * 15 13 11 31 31 H 1.08991 * 110.78928 * 264.10198 * 15 13 11 32 32 H 1.09004 * 110.73370 * 153.46990 * 19 16 15 33 33 H 1.09001 * 110.73638 * 276.77404 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.2214 1.1925 0.1394 5 6 1.4674 2.3839 -0.1796 6 7 0.1548 2.3882 -0.2423 7 14 2.4149 3.9866 -0.3319 8 1 3.8708 3.7124 -0.2297 9 1 2.1205 4.6127 -1.6459 10 1 2.0067 4.9084 0.7583 11 6 2.1389 -1.1673 0.0005 12 8 3.3483 -1.1692 0.0936 13 6 1.3899 -2.4698 -0.1147 14 1 0.4325 -2.2845 -0.6017 15 6 2.2098 -3.4439 -0.9860 16 16 1.8470 -5.0771 -0.2243 17 8 2.9762 -5.9301 -0.3532 18 8 0.5620 -5.5245 -0.6337 19 6 1.7596 -4.4136 1.4877 20 6 1.1348 -3.0186 1.2838 21 1 0.0592 -3.0858 1.4466 22 6 1.7288 -2.0533 2.3116 23 9 3.1132 -1.9706 2.1281 24 9 1.1596 -0.7863 2.1446 25 9 1.4565 -2.5205 3.6019 26 1 -0.3633 -1.0236 0.0920 27 1 -0.3634 0.5914 0.8404 28 1 -0.3633 0.4321 -0.9324 29 1 -0.3221 3.2235 -0.3673 30 1 3.2738 -3.2161 -0.9219 31 1 1.8699 -3.4167 -2.0212 32 1 1.1178 -5.0366 2.1107 33 1 2.7564 -4.3305 1.9208 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119099062.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:45 Heat of formation + Delta-G solvation = -202.682778 kcal Electronic energy + Delta-G solvation = -27026.373863 eV Core-core repulsion = 22574.064565 eV Total energy + Delta-G solvation = -4452.309299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.058 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -49.67633 -47.21309 -46.94121 -39.26382 -37.19688 -36.21445 -35.93615 -34.73286 -31.70548 -30.51536 -27.45103 -26.51678 -24.92121 -23.85659 -21.56044 -19.21318 -19.05760 -18.37222 -17.83670 -17.48816 -16.95448 -16.63085 -16.09378 -15.90222 -15.70217 -14.73925 -14.54053 -14.35278 -14.12400 -13.92548 -13.73799 -13.46174 -13.24870 -13.13120 -13.00941 -12.70522 -12.39257 -12.27015 -12.23394 -12.14023 -11.97828 -11.73439 -11.27652 -11.14639 -11.03891 -10.93189 -10.67608 -10.46140 -10.38566 -10.18676 -9.11516 -8.56056 -7.93327 -6.37063 -3.91054 -0.07220 2.26784 2.97615 3.04966 3.19323 3.25860 3.31056 3.51986 3.72502 3.91267 4.05844 4.16936 4.21322 4.45983 4.64902 4.71934 4.81620 4.92798 5.08400 5.13585 5.25963 5.46376 5.61376 5.64416 5.95378 6.20633 6.98589 7.29923 7.46011 7.92207 8.34091 9.04920 9.28972 9.78968 10.57490 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.005557 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.052506 B = 5037.822296 C = 5411.934473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.424 5.424 3 C -0.294 4.294 4 H 0.107 0.893 5 C 0.028 3.972 6 N -0.883 5.883 7 Si 0.931 3.069 8 H -0.267 1.267 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.419 3.581 12 O -0.572 6.572 13 C -0.108 4.108 14 H 0.122 0.878 15 C -0.548 4.548 16 S 2.385 3.615 17 O -0.932 6.932 18 O -0.929 6.929 19 C -0.582 4.582 20 C -0.119 4.119 21 H 0.134 0.866 22 C 0.449 3.551 23 F -0.154 7.154 24 F -0.154 7.154 25 F -0.193 7.193 26 H 0.020 0.980 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.267 0.733 30 H 0.158 0.842 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 -10.065 2.279 10.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.140 5.140 3 C -0.422 4.422 4 H 0.124 0.876 5 C -0.174 4.174 6 N -0.523 5.523 7 Si 0.758 3.242 8 H -0.192 1.192 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.205 3.795 12 O -0.457 6.457 13 C -0.131 4.131 14 H 0.140 0.860 15 C -0.679 4.679 16 S 2.569 3.431 17 O -0.929 6.929 18 O -0.926 6.926 19 C -0.710 4.710 20 C -0.140 4.140 21 H 0.152 0.848 22 C 0.394 3.606 23 F -0.135 7.135 24 F -0.135 7.135 25 F -0.175 7.175 26 H 0.038 0.962 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.176 0.824 31 H 0.160 0.840 32 H 0.166 0.834 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.090 -10.803 1.949 11.175 hybrid contribution 0.203 1.890 0.517 1.969 sum -1.888 -8.914 2.466 9.439 Atomic orbital electron populations 1.21932 0.80327 0.96159 1.04837 1.43672 1.05979 1.04537 1.59859 1.19862 0.94032 0.82058 1.46240 0.87557 1.25350 0.95811 0.99823 0.96409 1.70143 1.06070 1.27479 1.48641 0.85767 0.79807 0.80752 0.77876 1.19156 1.20575 1.20652 1.19170 0.88148 0.83922 0.88307 1.90570 1.13186 1.85736 1.56236 1.21419 1.02293 0.97424 0.91946 0.86043 1.30342 1.11705 1.16476 1.09333 1.09302 0.75560 0.78699 0.79558 1.93617 1.51536 1.63389 1.84363 1.93632 1.39807 1.79655 1.79485 1.30526 1.11137 1.04151 1.25185 1.22512 1.04241 0.92342 0.94926 0.84752 1.20198 0.78289 0.81635 0.80502 1.93340 1.29294 1.96200 1.94640 1.93398 1.84370 1.41076 1.94660 1.93140 1.93836 1.88698 1.41779 0.96194 0.90401 0.91081 0.92228 0.82371 0.83978 0.83371 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.31 6.95 59.85 0.42 2.73 16 2 N -0.42 -10.00 1.80 -122.20 -0.22 -10.22 16 3 C -0.29 -7.75 9.55 -14.93 -0.14 -7.89 16 4 H 0.11 2.97 7.19 -52.49 -0.38 2.60 16 5 C 0.03 0.72 5.46 -17.47 -0.10 0.62 16 6 N -0.88 -22.02 9.48 55.50 0.53 -21.49 16 7 Si 0.93 20.12 29.56 -169.99 -5.02 15.10 16 8 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 9 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 11 C 0.42 9.02 3.90 -10.98 -0.04 8.98 16 12 O -0.57 -14.03 12.88 5.55 0.07 -13.96 16 13 C -0.11 -1.67 2.20 -91.42 -0.20 -1.87 16 14 H 0.12 1.64 5.99 -51.93 -0.31 1.33 16 15 C -0.55 -7.12 6.83 37.83 0.26 -6.86 16 16 S 2.39 27.64 6.07 -107.50 -0.65 26.98 16 17 O -0.93 -13.56 18.16 -57.67 -1.05 -14.60 16 18 O -0.93 -12.57 18.16 -57.67 -1.05 -13.62 16 19 C -0.58 -6.16 6.52 37.79 0.25 -5.92 16 20 C -0.12 -1.60 2.52 -90.31 -0.23 -1.83 16 21 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 22 C 0.45 7.73 2.29 37.16 0.09 7.82 16 23 F -0.15 -3.06 13.04 2.25 0.03 -3.03 16 24 F -0.15 -3.14 11.97 2.25 0.03 -3.11 16 25 F -0.19 -3.01 17.01 2.25 0.04 -2.97 16 26 H 0.02 0.33 5.34 -51.93 -0.28 0.05 16 27 H 0.08 1.77 6.87 -51.93 -0.36 1.41 16 28 H 0.07 1.57 7.02 -51.93 -0.36 1.21 16 29 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 30 H 0.16 2.28 6.97 -51.93 -0.36 1.92 16 31 H 0.14 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.15 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.15 1.57 7.31 -51.93 -0.38 1.19 16 LS Contribution 285.08 15.07 4.30 4.30 Total: -1.00 -33.55 285.08 -5.54 -39.09 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -2.83 Total: 1.76 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 0.30 Total: -4.22 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.31 Total: -31.71 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -2.02 Total: -42.18 kcal Atomic # 9 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 27.64 SS G_CDS: -0.65 Total: 26.98 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.55 -5.54 -39.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119099062.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.593 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds