Wall clock time and date at job start Tue Mar 31 2020 11:13:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.37094 * 120.00254 * 2 1
4 4 H 1.07997 * 120.00615 * 171.42478 * 3 2 1
5 5 C 1.38956 * 119.99741 * 351.41515 * 3 2 1
6 6 N 1.31409 * 120.00046 * 5.44700 * 5 3 2
7 7 Si 1.86802 * 120.00235 * 185.44134 * 5 3 2
8 8 H 1.48504 * 109.46754 * 0.02562 * 7 5 3
9 9 H 1.48503 * 109.46918 * 120.00081 * 7 5 3
10 10 H 1.48491 * 109.47327 * 240.00507 * 7 5 3
11 11 C 1.34786 * 120.00055 * 179.97438 * 2 1 3
12 12 O 1.21293 * 119.99758 * 185.08300 * 11 2 1
13 13 C 1.50696 * 119.99817 * 5.08869 * 11 2 1
14 14 H 1.09000 * 108.89172 * 24.01947 * 13 11 2
15 15 C 1.54284 * 108.94569 * 142.51106 * 13 11 2
16 16 S 1.83828 * 102.82851 * 145.75101 * 15 13 11
17 17 O 1.42098 * 109.80900 * 212.07981 * 16 15 13
18 18 O 1.42091 * 109.81212 * 77.76325 * 16 15 13
19 19 C 1.83822 * 94.27608 * 324.91896 * 16 15 13
20 20 C 1.52381 * 108.92637 * 265.34865 * 13 11 2
21 21 H 1.08997 * 108.92645 * 118.51580 * 20 13 11
22 22 C 1.53004 * 108.92182 * 0.02562 * 20 13 11
23 23 F 1.39899 * 109.46947 * 297.75469 * 22 20 13
24 24 F 1.39895 * 109.47104 * 57.76264 * 22 20 13
25 25 F 1.39908 * 109.46708 * 177.76251 * 22 20 13
26 26 H 1.09004 * 109.46773 * 185.13406 * 1 2 3
27 27 H 1.08995 * 109.47361 * 305.13487 * 1 2 3
28 28 H 1.08998 * 109.47234 * 65.13734 * 1 2 3
29 29 H 0.96996 * 120.00341 * 179.97438 * 6 5 3
30 30 H 1.08998 * 110.71525 * 27.43880 * 15 13 11
31 31 H 1.08991 * 110.78928 * 264.10198 * 15 13 11
32 32 H 1.09004 * 110.73370 * 153.46990 * 19 16 15
33 33 H 1.09001 * 110.73638 * 276.77404 * 19 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1505 1.1872 0.0000
4 1 3.2214 1.1925 0.1394
5 6 1.4674 2.3839 -0.1796
6 7 0.1548 2.3882 -0.2423
7 14 2.4149 3.9866 -0.3319
8 1 3.8708 3.7124 -0.2297
9 1 2.1205 4.6127 -1.6459
10 1 2.0067 4.9084 0.7583
11 6 2.1389 -1.1673 0.0005
12 8 3.3483 -1.1692 0.0936
13 6 1.3899 -2.4698 -0.1147
14 1 0.4325 -2.2845 -0.6017
15 6 2.2098 -3.4439 -0.9860
16 16 1.8470 -5.0771 -0.2243
17 8 2.9762 -5.9301 -0.3532
18 8 0.5620 -5.5245 -0.6337
19 6 1.7596 -4.4136 1.4877
20 6 1.1348 -3.0186 1.2838
21 1 0.0592 -3.0858 1.4466
22 6 1.7288 -2.0533 2.3116
23 9 3.1132 -1.9706 2.1281
24 9 1.1596 -0.7863 2.1446
25 9 1.4565 -2.5205 3.6019
26 1 -0.3633 -1.0236 0.0920
27 1 -0.3634 0.5914 0.8404
28 1 -0.3633 0.4321 -0.9324
29 1 -0.3221 3.2235 -0.3673
30 1 3.2738 -3.2161 -0.9219
31 1 1.8699 -3.4167 -2.0212
32 1 1.1178 -5.0366 2.1107
33 1 2.7564 -4.3305 1.9208
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001119099062.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:13:45
Heat of formation + Delta-G solvation = -202.682778 kcal
Electronic energy + Delta-G solvation = -27026.373863 eV
Core-core repulsion = 22574.064565 eV
Total energy + Delta-G solvation = -4452.309299 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.058 amu
Computer time = 1.27 seconds
Orbital eigenvalues (eV)
-49.67633 -47.21309 -46.94121 -39.26382 -37.19688 -36.21445 -35.93615 -34.73286
-31.70548 -30.51536 -27.45103 -26.51678 -24.92121 -23.85659 -21.56044 -19.21318
-19.05760 -18.37222 -17.83670 -17.48816 -16.95448 -16.63085 -16.09378 -15.90222
-15.70217 -14.73925 -14.54053 -14.35278 -14.12400 -13.92548 -13.73799 -13.46174
-13.24870 -13.13120 -13.00941 -12.70522 -12.39257 -12.27015 -12.23394 -12.14023
-11.97828 -11.73439 -11.27652 -11.14639 -11.03891 -10.93189 -10.67608 -10.46140
-10.38566 -10.18676 -9.11516 -8.56056 -7.93327 -6.37063 -3.91054 -0.07220
2.26784 2.97615 3.04966 3.19323 3.25860 3.31056 3.51986 3.72502
3.91267 4.05844 4.16936 4.21322 4.45983 4.64902 4.71934 4.81620
4.92798 5.08400 5.13585 5.25963 5.46376 5.61376 5.64416 5.95378
6.20633 6.98589 7.29923 7.46011 7.92207 8.34091 9.04920 9.28972
9.78968 10.57490
Molecular weight = 315.06amu
Principal moments of inertia in cm(-1)
A = 0.022448 B = 0.005557 C = 0.005173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1247.052506 B = 5037.822296 C = 5411.934473
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.111 3.889
2 N -0.424 5.424
3 C -0.294 4.294
4 H 0.107 0.893
5 C 0.028 3.972
6 N -0.883 5.883
7 Si 0.931 3.069
8 H -0.267 1.267
9 H -0.280 1.280
10 H -0.281 1.281
11 C 0.419 3.581
12 O -0.572 6.572
13 C -0.108 4.108
14 H 0.122 0.878
15 C -0.548 4.548
16 S 2.385 3.615
17 O -0.932 6.932
18 O -0.929 6.929
19 C -0.582 4.582
20 C -0.119 4.119
21 H 0.134 0.866
22 C 0.449 3.551
23 F -0.154 7.154
24 F -0.154 7.154
25 F -0.193 7.193
26 H 0.020 0.980
27 H 0.077 0.923
28 H 0.071 0.929
29 H 0.267 0.733
30 H 0.158 0.842
31 H 0.142 0.858
32 H 0.148 0.852
33 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.409 -10.065 2.279 10.597
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.033 4.033
2 N -0.140 5.140
3 C -0.422 4.422
4 H 0.124 0.876
5 C -0.174 4.174
6 N -0.523 5.523
7 Si 0.758 3.242
8 H -0.192 1.192
9 H -0.206 1.206
10 H -0.207 1.207
11 C 0.205 3.795
12 O -0.457 6.457
13 C -0.131 4.131
14 H 0.140 0.860
15 C -0.679 4.679
16 S 2.569 3.431
17 O -0.929 6.929
18 O -0.926 6.926
19 C -0.710 4.710
20 C -0.140 4.140
21 H 0.152 0.848
22 C 0.394 3.606
23 F -0.135 7.135
24 F -0.135 7.135
25 F -0.175 7.175
26 H 0.038 0.962
27 H 0.096 0.904
28 H 0.089 0.911
29 H 0.078 0.922
30 H 0.176 0.824
31 H 0.160 0.840
32 H 0.166 0.834
33 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -2.090 -10.803 1.949 11.175
hybrid contribution 0.203 1.890 0.517 1.969
sum -1.888 -8.914 2.466 9.439
Atomic orbital electron populations
1.21932 0.80327 0.96159 1.04837 1.43672 1.05979 1.04537 1.59859
1.19862 0.94032 0.82058 1.46240 0.87557 1.25350 0.95811 0.99823
0.96409 1.70143 1.06070 1.27479 1.48641 0.85767 0.79807 0.80752
0.77876 1.19156 1.20575 1.20652 1.19170 0.88148 0.83922 0.88307
1.90570 1.13186 1.85736 1.56236 1.21419 1.02293 0.97424 0.91946
0.86043 1.30342 1.11705 1.16476 1.09333 1.09302 0.75560 0.78699
0.79558 1.93617 1.51536 1.63389 1.84363 1.93632 1.39807 1.79655
1.79485 1.30526 1.11137 1.04151 1.25185 1.22512 1.04241 0.92342
0.94926 0.84752 1.20198 0.78289 0.81635 0.80502 1.93340 1.29294
1.96200 1.94640 1.93398 1.84370 1.41076 1.94660 1.93140 1.93836
1.88698 1.41779 0.96194 0.90401 0.91081 0.92228 0.82371 0.83978
0.83371 0.83328
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 41.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 2.31 6.95 59.85 0.42 2.73 16
2 N -0.42 -10.00 1.80 -122.20 -0.22 -10.22 16
3 C -0.29 -7.75 9.55 -14.93 -0.14 -7.89 16
4 H 0.11 2.97 7.19 -52.49 -0.38 2.60 16
5 C 0.03 0.72 5.46 -17.47 -0.10 0.62 16
6 N -0.88 -22.02 9.48 55.50 0.53 -21.49 16
7 Si 0.93 20.12 29.56 -169.99 -5.02 15.10 16
8 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16
9 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16
10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16
11 C 0.42 9.02 3.90 -10.98 -0.04 8.98 16
12 O -0.57 -14.03 12.88 5.55 0.07 -13.96 16
13 C -0.11 -1.67 2.20 -91.42 -0.20 -1.87 16
14 H 0.12 1.64 5.99 -51.93 -0.31 1.33 16
15 C -0.55 -7.12 6.83 37.83 0.26 -6.86 16
16 S 2.39 27.64 6.07 -107.50 -0.65 26.98 16
17 O -0.93 -13.56 18.16 -57.67 -1.05 -14.60 16
18 O -0.93 -12.57 18.16 -57.67 -1.05 -13.62 16
19 C -0.58 -6.16 6.52 37.79 0.25 -5.92 16
20 C -0.12 -1.60 2.52 -90.31 -0.23 -1.83 16
21 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16
22 C 0.45 7.73 2.29 37.16 0.09 7.82 16
23 F -0.15 -3.06 13.04 2.25 0.03 -3.03 16
24 F -0.15 -3.14 11.97 2.25 0.03 -3.11 16
25 F -0.19 -3.01 17.01 2.25 0.04 -2.97 16
26 H 0.02 0.33 5.34 -51.93 -0.28 0.05 16
27 H 0.08 1.77 6.87 -51.93 -0.36 1.41 16
28 H 0.07 1.57 7.02 -51.93 -0.36 1.21 16
29 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16
30 H 0.16 2.28 6.97 -51.93 -0.36 1.92 16
31 H 0.14 1.49 8.14 -51.93 -0.42 1.07 16
32 H 0.15 1.08 8.14 -51.93 -0.42 0.66 16
33 H 0.15 1.57 7.31 -51.93 -0.38 1.19 16
LS Contribution 285.08 15.07 4.30 4.30
Total: -1.00 -33.55 285.08 -5.54 -39.09
By element:
Atomic # 1 Polarization: 4.59 SS G_CDS: -2.83 Total: 1.76 kcal
Atomic # 6 Polarization: -4.52 SS G_CDS: 0.30 Total: -4.22 kcal
Atomic # 7 Polarization: -32.01 SS G_CDS: 0.31 Total: -31.71 kcal
Atomic # 8 Polarization: -40.16 SS G_CDS: -2.02 Total: -42.18 kcal
Atomic # 9 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal
Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal
Atomic # 16 Polarization: 27.64 SS G_CDS: -0.65 Total: 26.98 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -33.55 -5.54 -39.09 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001119099062.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -163.593 kcal
(2) G-P(sol) polarization free energy of solvation -33.553 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.146 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal
(6) G-S(sol) free energy of system = (1) + (5) -202.683 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.28 seconds