Wall clock time and date at job start Tue Mar 31 2020 11:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37094 * 120.00254 * 2 1 4 4 H 1.07997 * 120.00615 * 171.42478 * 3 2 1 5 5 C 1.38956 * 119.99741 * 351.41515 * 3 2 1 6 6 N 1.31409 * 120.00046 * 5.44700 * 5 3 2 7 7 Si 1.86802 * 120.00235 * 185.44134 * 5 3 2 8 8 H 1.48504 * 109.46754 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46918 * 120.00081 * 7 5 3 10 10 H 1.48491 * 109.47327 * 240.00507 * 7 5 3 11 11 C 1.34786 * 120.00055 * 179.97438 * 2 1 3 12 12 O 1.21293 * 119.99758 * 185.08300 * 11 2 1 13 13 C 1.50696 * 119.99817 * 5.08869 * 11 2 1 14 14 H 1.09000 * 108.89172 * 24.01947 * 13 11 2 15 15 C 1.54284 * 108.94569 * 142.51106 * 13 11 2 16 16 S 1.83828 * 102.82851 * 145.75101 * 15 13 11 17 17 O 1.42098 * 109.80900 * 212.07981 * 16 15 13 18 18 O 1.42091 * 109.81212 * 77.76325 * 16 15 13 19 19 C 1.83822 * 94.27608 * 324.91896 * 16 15 13 20 20 C 1.52381 * 108.92637 * 265.34865 * 13 11 2 21 21 H 1.08997 * 108.92645 * 118.51580 * 20 13 11 22 22 C 1.53004 * 108.92182 * 0.02562 * 20 13 11 23 23 F 1.39899 * 109.46947 * 297.75469 * 22 20 13 24 24 F 1.39895 * 109.47104 * 57.76264 * 22 20 13 25 25 F 1.39908 * 109.46708 * 177.76251 * 22 20 13 26 26 H 1.09004 * 109.46773 * 185.13406 * 1 2 3 27 27 H 1.08995 * 109.47361 * 305.13487 * 1 2 3 28 28 H 1.08998 * 109.47234 * 65.13734 * 1 2 3 29 29 H 0.96996 * 120.00341 * 179.97438 * 6 5 3 30 30 H 1.08998 * 110.71525 * 27.43880 * 15 13 11 31 31 H 1.08991 * 110.78928 * 264.10198 * 15 13 11 32 32 H 1.09004 * 110.73370 * 153.46990 * 19 16 15 33 33 H 1.09001 * 110.73638 * 276.77404 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.2214 1.1925 0.1394 5 6 1.4674 2.3839 -0.1796 6 7 0.1548 2.3882 -0.2423 7 14 2.4149 3.9866 -0.3319 8 1 3.8708 3.7124 -0.2297 9 1 2.1205 4.6127 -1.6459 10 1 2.0067 4.9084 0.7583 11 6 2.1389 -1.1673 0.0005 12 8 3.3483 -1.1692 0.0936 13 6 1.3899 -2.4698 -0.1147 14 1 0.4325 -2.2845 -0.6017 15 6 2.2098 -3.4439 -0.9860 16 16 1.8470 -5.0771 -0.2243 17 8 2.9762 -5.9301 -0.3532 18 8 0.5620 -5.5245 -0.6337 19 6 1.7596 -4.4136 1.4877 20 6 1.1348 -3.0186 1.2838 21 1 0.0592 -3.0858 1.4466 22 6 1.7288 -2.0533 2.3116 23 9 3.1132 -1.9706 2.1281 24 9 1.1596 -0.7863 2.1446 25 9 1.4565 -2.5205 3.6019 26 1 -0.3633 -1.0236 0.0920 27 1 -0.3634 0.5914 0.8404 28 1 -0.3633 0.4321 -0.9324 29 1 -0.3221 3.2235 -0.3673 30 1 3.2738 -3.2161 -0.9219 31 1 1.8699 -3.4167 -2.0212 32 1 1.1178 -5.0366 2.1107 33 1 2.7564 -4.3305 1.9208 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119099062.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:45 Heat of formation + Delta-G solvation = -227.665394 kcal Electronic energy + Delta-G solvation = -27027.457191 eV Core-core repulsion = 22574.064565 eV Total energy + Delta-G solvation = -4453.392626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.058 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.06146 -48.56632 -48.41305 -40.82956 -38.26919 -37.44607 -37.10924 -36.46458 -33.55118 -31.62358 -28.78158 -28.06813 -26.49479 -25.30726 -22.88900 -20.62417 -20.12484 -19.74635 -19.17196 -19.02206 -18.67674 -17.75380 -17.48621 -16.93865 -16.75740 -16.37588 -16.07794 -15.84689 -15.53319 -15.38048 -15.08015 -14.88851 -14.64608 -14.51845 -14.22282 -14.09470 -13.87121 -13.68185 -13.35931 -13.28175 -13.19264 -13.13037 -12.80103 -12.76452 -12.55365 -12.36131 -12.14920 -12.11086 -11.77816 -11.44770 -10.97757 -10.30904 -9.76827 -8.24287 -5.86364 -1.03491 1.27115 1.35635 1.40369 1.52591 1.73832 1.91389 2.24585 2.34725 2.67962 2.78485 2.90070 3.02359 3.15743 3.21433 3.42053 3.53105 3.73099 3.83992 3.95518 4.10961 4.36956 4.49607 4.60930 4.74400 4.91340 5.27499 5.46810 5.58747 6.05406 6.48168 7.18157 7.51287 8.02081 8.67270 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.005557 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.052506 B = 5037.822296 C = 5411.934473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.444 5.444 3 C -0.328 4.328 4 H 0.075 0.925 5 C -0.003 4.003 6 N -0.893 5.893 7 Si 0.985 3.015 8 H -0.278 1.278 9 H -0.270 1.270 10 H -0.273 1.273 11 C 0.421 3.579 12 O -0.609 6.609 13 C -0.107 4.107 14 H 0.147 0.853 15 C -0.559 4.559 16 S 2.430 3.570 17 O -0.960 6.960 18 O -0.938 6.938 19 C -0.572 4.572 20 C -0.118 4.118 21 H 0.180 0.820 22 C 0.437 3.563 23 F -0.177 7.177 24 F -0.177 7.177 25 F -0.183 7.183 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.270 0.730 30 H 0.140 0.860 31 H 0.165 0.835 32 H 0.193 0.807 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.951 -11.716 2.434 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.161 5.161 3 C -0.457 4.457 4 H 0.093 0.907 5 C -0.204 4.204 6 N -0.533 5.533 7 Si 0.810 3.190 8 H -0.203 1.203 9 H -0.195 1.195 10 H -0.199 1.199 11 C 0.209 3.791 12 O -0.496 6.496 13 C -0.130 4.130 14 H 0.165 0.835 15 C -0.688 4.688 16 S 2.614 3.386 17 O -0.957 6.957 18 O -0.935 6.935 19 C -0.701 4.701 20 C -0.138 4.138 21 H 0.197 0.803 22 C 0.382 3.618 23 F -0.158 7.158 24 F -0.159 7.159 25 F -0.164 7.164 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.158 0.842 31 H 0.183 0.817 32 H 0.210 0.790 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.650 -12.462 2.082 13.151 hybrid contribution 0.738 2.339 0.540 2.512 sum -2.911 -10.123 2.622 10.854 Atomic orbital electron populations 1.21780 0.78900 0.98567 1.02924 1.43834 1.06921 1.04408 1.60964 1.19681 0.93141 0.84237 1.48596 0.90746 1.25943 0.96717 1.01822 0.95903 1.70236 1.06442 1.28130 1.48471 0.84989 0.78022 0.77745 0.78293 1.20306 1.19526 1.19882 1.20160 0.88114 0.85384 0.85461 1.90546 1.15324 1.86880 1.56839 1.21508 1.02847 0.94444 0.94174 0.83503 1.30470 1.10352 1.17182 1.10822 1.08044 0.74244 0.77061 0.79285 1.93584 1.52881 1.64122 1.85117 1.93617 1.40146 1.79608 1.80163 1.30597 1.12246 1.02633 1.24640 1.22727 1.06882 0.92318 0.91912 0.80264 1.20829 0.77375 0.81607 0.81990 1.93295 1.31353 1.96323 1.94851 1.93354 1.84551 1.43089 1.94864 1.93153 1.93618 1.88341 1.41321 0.91460 0.92672 0.92734 0.91925 0.84192 0.81676 0.78963 0.83238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.96 6.95 127.77 0.89 5.85 16 2 N -0.44 -21.18 1.80 -658.89 -1.18 -22.37 16 3 C -0.33 -17.94 9.55 84.04 0.80 -17.14 16 4 H 0.07 4.43 7.19 -2.91 -0.02 4.41 16 5 C 0.00 -0.14 5.46 84.93 0.46 0.32 16 6 N -0.89 -44.87 9.48 21.66 0.21 -44.67 16 7 Si 0.98 42.01 29.56 68.60 2.03 44.03 16 8 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 9 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 11 C 0.42 18.13 3.90 87.65 0.34 18.47 16 12 O -0.61 -30.75 12.88 -3.07 -0.04 -30.79 16 13 C -0.11 -3.05 2.20 -11.31 -0.02 -3.07 16 14 H 0.15 3.40 5.99 -2.39 -0.01 3.38 16 15 C -0.56 -13.39 6.83 72.42 0.49 -12.90 16 16 S 2.43 48.35 6.07 -56.49 -0.34 48.01 16 17 O -0.96 -25.73 18.16 -127.53 -2.32 -28.05 16 18 O -0.94 -21.50 18.16 -127.53 -2.32 -23.82 16 19 C -0.57 -9.76 6.52 72.39 0.47 -9.29 16 20 C -0.12 -2.74 2.52 -10.59 -0.03 -2.77 16 21 H 0.18 2.61 8.14 -2.39 -0.02 2.59 16 22 C 0.44 14.37 2.29 71.98 0.17 14.54 16 23 F -0.18 -7.09 13.04 44.97 0.59 -6.50 16 24 F -0.18 -7.17 11.97 44.97 0.54 -6.63 16 25 F -0.18 -5.29 17.01 44.97 0.76 -4.53 16 26 H 0.07 2.04 5.34 -2.38 -0.01 2.03 16 27 H 0.05 2.50 6.87 -2.39 -0.02 2.48 16 28 H 0.05 2.39 7.02 -2.39 -0.02 2.37 16 29 H 0.27 12.82 8.31 -92.71 -0.77 12.04 16 30 H 0.14 4.00 6.97 -2.39 -0.02 3.98 16 31 H 0.17 3.06 8.14 -2.39 -0.02 3.05 16 32 H 0.19 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.15 2.70 7.31 -2.39 -0.02 2.68 16 Total: -1.00 -75.72 285.08 2.68 -73.04 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 1.18 Total: 8.25 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 3.58 Total: -5.99 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -0.98 Total: -67.04 kcal Atomic # 8 Polarization: -77.99 SS G_CDS: -4.67 Total: -82.66 kcal Atomic # 9 Polarization: -19.55 SS G_CDS: 1.89 Total: -17.66 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 48.35 SS G_CDS: -0.34 Total: 48.01 kcal Total: -75.72 2.68 -73.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119099062.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.622 kcal (2) G-P(sol) polarization free energy of solvation -75.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds