Wall clock time and date at job start Tue Mar 31 2020 11:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 117.00104 * 2 1 4 4 O 1.20825 * 120.00289 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99648 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47378 * 59.99708 * 5 3 2 7 7 C 1.52999 * 109.47199 * 299.99736 * 5 3 2 8 8 S 1.81400 * 109.46944 * 180.02562 * 7 5 3 9 9 N 1.46506 * 109.46810 * 179.97438 * 5 3 2 10 10 C 1.38749 * 119.99493 * 204.99985 * 9 5 3 11 11 C 1.38672 * 120.28947 * 359.97438 * 10 9 5 12 12 C 1.38323 * 120.01525 * 180.02562 * 11 10 9 13 13 Cl 1.73599 * 119.70072 * 179.97438 * 12 11 10 14 14 C 1.39048 * 120.59298 * 359.95755 * 12 11 10 15 15 C 1.36403 * 120.58034 * 0.02570 * 14 12 11 16 16 C 1.40746 * 119.96462 * 0.24588 * 15 14 12 17 17 C 1.41027 * 120.29428 * 179.72636 * 16 15 14 18 18 H 1.07999 * 119.99781 * 205.52811 * 17 16 15 19 19 C 1.39903 * 119.99861 * 25.52459 * 17 16 15 20 20 N 1.30901 * 119.99853 * 15.37591 * 19 17 16 21 21 Si 1.86800 * 119.99936 * 195.37736 * 19 17 16 22 22 H 1.48496 * 109.47001 * 59.99849 * 21 19 17 23 23 H 1.48502 * 109.46979 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46890 * 299.99599 * 21 19 17 25 25 H 1.09008 * 109.46626 * 60.00087 * 1 2 3 26 26 H 1.09000 * 109.47647 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46783 * 300.00770 * 1 2 3 28 28 H 1.08997 * 109.46932 * 300.00244 * 7 5 3 29 29 H 1.09002 * 109.47018 * 60.00100 * 7 5 3 30 30 H 1.34506 * 102.99544 * 179.97438 * 8 7 5 31 31 H 0.96994 * 120.00081 * 24.99639 * 9 5 3 32 32 H 1.07997 * 119.99173 * 0.02985 * 11 10 9 33 33 H 1.08004 * 119.70998 * 180.02562 * 14 12 11 34 34 H 1.08003 * 120.01871 * 179.97438 * 15 14 12 35 35 H 0.97003 * 119.99695 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9558 0.7807 -0.8908 7 6 4.1139 0.5809 1.2483 8 16 5.9254 0.6764 1.2479 9 7 3.9818 2.6796 -0.0011 10 6 5.2227 3.0359 -0.5095 11 6 6.0745 2.0670 -1.0181 12 6 7.3105 2.4284 -1.5230 13 17 8.3707 1.2087 -2.1571 14 6 7.7113 3.7599 -1.5276 15 6 6.8926 4.7327 -1.0337 16 6 5.6321 4.3911 -0.5089 17 6 4.7825 5.3906 0.0088 18 1 4.0438 5.1380 0.7551 19 6 4.8966 6.7093 -0.4443 20 7 5.5621 6.9691 -1.5412 21 14 4.0993 8.0991 0.5159 22 1 4.6653 8.1410 1.8882 23 1 4.3644 9.3897 -0.1691 24 1 2.6338 7.8714 0.5916 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 3.7245 1.0749 2.1385 29 1 3.8048 -0.4644 1.2483 30 1 6.2622 0.0381 2.3830 31 1 3.3894 3.3607 0.3539 32 1 5.7728 1.0300 -1.0200 33 1 8.6793 4.0261 -1.9257 34 1 7.2132 5.7640 -1.0414 35 1 5.6415 7.8835 -1.8551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167624445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:43 Heat of formation + Delta-G solvation = -59.177245 kcal Electronic energy + Delta-G solvation = -21964.285591 eV Core-core repulsion = 18500.765064 eV Total energy + Delta-G solvation = -3463.520527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61967 -38.28143 -36.65650 -35.52976 -34.98364 -33.42701 -31.17317 -29.43903 -27.93742 -27.58249 -25.16687 -24.32578 -21.72935 -20.69329 -19.81622 -18.04718 -17.27554 -17.16746 -16.93771 -16.24012 -15.92555 -15.27304 -14.81145 -14.40486 -14.11870 -13.88920 -13.33546 -13.18073 -12.89345 -12.70490 -12.45132 -12.34732 -12.03655 -11.82014 -11.60865 -11.29474 -11.09959 -10.90697 -10.72455 -10.53373 -10.44203 -10.07816 -9.83190 -9.68539 -9.49820 -9.15434 -8.92082 -7.53908 -7.26227 -6.79448 -6.43401 -4.21258 1.74849 2.19306 2.56085 2.72632 3.03052 3.08474 3.11115 3.14770 3.27585 3.54075 3.95124 4.22412 4.60466 4.68622 4.90398 4.97043 5.01055 5.05749 5.37471 5.38196 5.63153 5.69686 6.21372 6.26188 6.44673 6.75566 6.97550 7.15372 7.28897 7.41762 7.64027 7.70602 7.93839 8.04217 8.25341 8.57861 8.69587 8.87017 8.95400 10.21432 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.008912 B = 0.006771 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3140.941343 B = 4134.393297 C = 6501.012378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.463 3.537 4 O -0.487 6.487 5 C 0.188 3.812 6 H 0.119 0.881 7 C -0.103 4.103 8 S -0.147 6.147 9 N -0.725 5.725 10 C 0.127 3.873 11 C -0.141 4.141 12 C -0.100 4.100 13 Cl -0.133 7.133 14 C -0.122 4.122 15 C -0.135 4.135 16 C 0.081 3.919 17 C -0.455 4.455 18 H 0.074 0.926 19 C 0.077 3.923 20 N -0.795 5.795 21 Si 0.906 3.094 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.267 1.267 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.011 0.989 31 H 0.409 0.591 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 -10.336 3.218 12.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.302 3.698 4 O -0.372 6.372 5 C 0.077 3.923 6 H 0.136 0.864 7 C -0.254 4.254 8 S 0.007 5.993 9 N -0.362 5.362 10 C 0.028 3.972 11 C -0.168 4.168 12 C -0.128 4.128 13 Cl -0.105 7.105 14 C -0.142 4.142 15 C -0.156 4.156 16 C 0.077 3.923 17 C -0.485 4.485 18 H 0.092 0.908 19 C -0.141 4.141 20 N -0.420 5.420 21 Si 0.730 3.270 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.191 1.191 25 H 0.083 0.917 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.112 0.888 30 H -0.024 1.024 31 H 0.248 0.752 32 H 0.130 0.870 33 H 0.113 0.887 34 H 0.145 0.855 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.984 -9.972 2.848 11.506 hybrid contribution -1.497 0.246 1.400 2.065 sum -6.481 -9.726 4.248 12.435 Atomic orbital electron populations 1.23278 0.76292 1.03599 1.02719 1.86499 1.23431 1.33231 1.84271 1.23788 0.91761 0.81589 0.72623 1.90701 1.66428 1.36204 1.43903 1.19726 0.85586 0.87957 0.98986 0.86364 1.23903 0.95903 1.03696 1.01909 1.89387 1.04336 1.75804 1.29768 1.43714 1.18220 1.03148 1.71154 1.17497 0.85079 0.93411 1.01199 1.19641 0.94202 0.96857 1.06064 1.19816 0.93033 0.87823 1.12115 1.98220 1.67502 1.57864 1.86944 1.20198 0.99447 0.90999 1.03543 1.20754 0.92912 0.98543 1.03365 1.17221 0.92557 0.88926 0.93620 1.19176 1.16580 0.92145 1.20594 0.90764 1.25786 0.94363 1.00037 0.93882 1.69815 1.33127 1.22008 1.17088 0.86402 0.80294 0.79592 0.80673 1.18936 1.20414 1.19140 0.91722 0.88090 0.91901 0.89727 0.88839 1.02369 0.75183 0.87043 0.88728 0.85484 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.29 10.47 -39.25 -0.41 -4.70 16 3 C 0.46 6.80 7.32 36.01 0.26 7.07 16 4 O -0.49 -8.54 15.59 -18.75 -0.29 -8.83 16 5 C 0.19 2.87 2.76 -69.08 -0.19 2.68 16 6 H 0.12 1.76 6.48 -51.93 -0.34 1.42 16 7 C -0.10 -1.39 5.93 37.16 0.22 -1.17 16 8 S -0.15 -2.40 20.41 -107.50 -2.19 -4.59 16 9 N -0.72 -13.86 4.96 -52.87 -0.26 -14.12 16 10 C 0.13 2.78 5.91 -83.30 -0.49 2.29 16 11 C -0.14 -2.92 6.26 -39.39 -0.25 -3.16 16 12 C -0.10 -2.15 6.33 -39.25 -0.25 -2.40 16 13 Cl -0.13 -2.53 28.94 -51.86 -1.50 -4.03 16 14 C -0.12 -2.76 9.74 -39.94 -0.39 -3.15 16 15 C -0.13 -3.31 8.63 -39.30 -0.34 -3.65 16 16 C 0.08 2.00 5.59 -106.62 -0.60 1.41 16 17 C -0.45 -11.24 8.50 -37.90 -0.32 -11.56 16 18 H 0.07 1.77 6.70 -52.49 -0.35 1.42 16 19 C 0.08 1.85 5.18 -17.32 -0.09 1.76 16 20 N -0.79 -19.78 10.88 55.55 0.60 -19.17 16 21 Si 0.91 18.36 29.59 -169.99 -5.03 13.33 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H 0.06 0.59 8.13 -51.92 -0.42 0.17 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.09 1.02 8.11 -51.92 -0.42 0.60 16 30 H 0.01 0.17 9.07 97.61 0.89 1.05 16 31 H 0.41 8.27 6.02 -40.82 -0.25 8.02 16 32 H 0.11 2.11 4.79 -46.18 -0.22 1.89 16 33 H 0.09 2.00 8.06 -52.48 -0.42 1.58 16 34 H 0.13 3.24 6.13 -52.48 -0.32 2.92 16 35 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -26.87 321.06 -7.87 -34.74 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -2.26 Total: 11.05 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.36 Total: -8.51 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.34 Total: -33.29 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.70 Total: -13.53 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -2.19 Total: -4.59 kcal Atomic # 17 Polarization: -2.53 SS G_CDS: -1.50 Total: -4.03 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.87 -7.87 -34.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167624445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.440 kcal (2) G-P(sol) polarization free energy of solvation -26.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds