Wall clock time and date at job start Tue Mar 31 2020 11:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99726 * 2 1 4 4 H 1.48503 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47084 * 300.00254 * 3 2 1 6 6 H 1.48505 * 109.46907 * 59.99924 * 3 2 1 7 7 C 1.37879 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99925 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47372 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47445 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47413 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00371 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99822 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00202 * 180.02562 * 13 12 11 16 16 S 1.81400 * 109.47214 * 180.02562 * 15 13 12 17 17 C 1.76194 * 103.00272 * 179.97438 * 16 15 13 18 18 C 1.39354 * 120.09388 * 180.02562 * 17 16 15 19 19 N 1.31920 * 119.92446 * 179.97438 * 18 17 16 20 20 C 1.32264 * 120.10426 * 359.97438 * 19 18 17 21 21 C 1.38340 * 120.18709 * 0.02562 * 20 19 18 22 22 Cl 1.73601 * 119.96197 * 180.02562 * 21 20 19 23 23 N 1.32334 * 120.07746 * 359.97438 * 21 20 19 24 24 H 0.96993 * 120.00783 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46873 * 59.99971 * 9 7 2 26 26 H 1.08994 * 109.47182 * 300.00241 * 9 7 2 27 27 H 1.09000 * 109.46907 * 59.99788 * 10 9 7 28 28 H 1.09008 * 109.46882 * 300.00266 * 10 9 7 29 29 H 1.09001 * 109.46990 * 59.99548 * 11 10 9 30 30 H 1.09008 * 109.47145 * 299.99917 * 11 10 9 31 31 H 0.97000 * 120.00082 * 0.02562 * 12 11 10 32 32 H 1.09000 * 109.47199 * 59.99677 * 15 13 12 33 33 H 1.09003 * 109.46665 * 299.99590 * 15 13 12 34 34 H 1.08003 * 120.04016 * 359.97438 * 18 17 16 35 35 H 1.08006 * 119.90421 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4806 -4.9871 -0.0012 12 7 2.4326 -6.1005 -0.0018 13 6 1.9835 -7.3712 -0.0019 14 8 0.7911 -7.5929 -0.0020 15 6 2.9628 -8.5166 -0.0020 16 16 2.0560 -10.0876 -0.0029 17 6 3.3446 -11.2892 -0.0036 18 6 3.0334 -12.6476 -0.0049 19 7 4.0009 -13.5444 -0.0060 20 6 5.2653 -13.1562 -0.0063 21 6 5.5793 -11.8089 -0.0050 22 17 7.2409 -11.3059 -0.0060 23 7 4.6146 -10.9031 -0.0039 24 1 -0.4851 0.8399 -0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6249 -2.5571 0.8896 27 1 2.8721 -3.6042 0.8894 28 1 2.8722 -3.6042 -0.8906 29 1 0.8542 -5.0445 -0.8914 30 1 0.8536 -5.0451 0.8886 31 1 3.3863 -5.9232 -0.0014 32 1 3.5895 -8.4589 0.8880 33 1 3.5895 -8.4587 -0.8920 34 1 2.0013 -12.9658 -0.0051 35 1 6.0548 -13.8932 -0.0067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177469635.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:07 Heat of formation + Delta-G solvation = -9.729700 kcal Electronic energy + Delta-G solvation = -19608.778381 eV Core-core repulsion = 16179.694811 eV Total energy + Delta-G solvation = -3429.083570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.055 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50923 -39.64250 -37.39324 -35.57632 -34.95699 -33.43211 -31.96666 -31.64364 -30.04479 -26.57022 -25.59358 -25.01895 -23.13971 -20.93778 -20.28660 -18.82937 -18.47114 -17.46154 -16.94932 -16.62221 -16.12828 -16.08582 -15.70258 -15.38443 -14.51302 -14.48910 -14.31921 -13.69159 -13.37399 -13.07191 -12.81668 -12.36032 -12.33895 -12.04576 -11.96597 -11.89857 -11.76154 -11.05363 -10.95862 -10.81426 -10.61799 -10.23870 -10.17602 -9.94221 -9.87644 -9.48440 -9.15836 -8.98032 -8.41514 -8.11423 -6.05779 -4.09067 -0.06794 0.32670 0.69757 1.00641 1.66606 2.47136 2.85743 3.17761 3.27351 3.35122 3.38495 3.60076 3.69411 3.95927 4.39748 4.40790 4.55003 4.62983 4.66954 4.98028 5.30172 5.42912 5.59608 5.67911 6.06546 6.29947 6.31165 6.50992 6.70842 6.92116 6.92137 7.44213 7.58709 7.70217 7.92491 8.09351 8.33447 8.97724 9.55466 11.05492 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.023677 B = 0.002009 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.275311 B =13935.833220 C =15087.056995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.716 5.716 13 C 0.525 3.475 14 O -0.529 6.529 15 C -0.147 4.147 16 S 0.055 5.945 17 C 0.070 3.930 18 C 0.077 3.923 19 N -0.403 5.403 20 C 0.053 3.947 21 C 0.143 3.857 22 Cl -0.008 7.008 23 N -0.447 5.447 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.402 0.598 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.185 0.815 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.938 -27.831 -0.009 30.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.367 5.367 13 C 0.308 3.692 14 O -0.406 6.406 15 C -0.298 4.298 16 S 0.295 5.705 17 C -0.181 4.181 18 C -0.092 4.092 19 N -0.117 5.117 20 C -0.110 4.110 21 C -0.028 4.028 22 Cl 0.021 6.979 23 N -0.169 5.169 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.236 0.764 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.202 0.798 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 9.844 -27.846 -0.009 29.534 hybrid contribution 2.638 1.427 0.001 2.999 sum 12.482 -26.418 -0.008 29.218 Atomic orbital electron populations 1.69964 1.06059 1.26649 1.50528 1.25036 0.94870 0.99356 0.95246 0.86523 0.80033 0.83717 0.77631 1.19761 1.20979 1.20974 1.21225 0.93026 0.90890 1.50957 0.92580 1.19036 0.93834 0.90831 0.97724 1.21905 0.99828 0.93176 1.01016 1.21743 0.91752 0.84769 1.02339 1.46097 1.11249 1.05323 1.74023 1.19549 0.88651 0.83694 0.77310 1.90765 1.16100 1.84249 1.49506 1.23770 1.02439 0.94440 1.09178 1.86447 1.01653 0.93647 1.88703 1.24905 0.95324 0.98877 0.99037 1.23536 1.00779 0.87736 0.97122 1.68595 0.99645 1.36186 1.07281 1.23516 0.95093 0.93409 0.98997 1.22895 0.89241 0.91310 0.99309 1.98449 1.11048 1.92302 1.96148 1.68317 0.98812 1.36938 1.12825 0.92933 0.96214 0.96222 0.92608 0.92616 0.91417 0.91414 0.76416 0.85862 0.85866 0.79830 0.80221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.41 16 11 C 0.12 1.92 5.67 -4.05 -0.02 1.90 16 12 N -0.72 -9.31 5.56 -60.30 -0.33 -9.64 16 13 C 0.52 6.99 7.85 -10.99 -0.09 6.91 16 14 O -0.53 -9.09 15.86 5.56 0.09 -9.00 16 15 C -0.15 -1.43 5.71 36.01 0.21 -1.22 16 16 S 0.05 0.55 21.06 -107.50 -2.26 -1.72 16 17 C 0.07 0.64 7.00 -16.74 -0.12 0.52 16 18 C 0.08 0.60 10.99 -17.10 -0.19 0.42 16 19 N -0.40 -3.33 10.49 -12.83 -0.13 -3.46 16 20 C 0.05 0.38 10.99 -17.33 -0.19 0.19 16 21 C 0.14 1.18 7.28 -17.30 -0.13 1.06 16 22 Cl -0.01 -0.06 29.13 -51.86 -1.51 -1.57 16 23 N -0.45 -4.30 9.59 -9.04 -0.09 -4.38 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 31 H 0.40 4.07 8.47 -40.82 -0.35 3.72 16 32 H 0.12 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.12 1.04 8.14 -51.92 -0.42 0.62 16 34 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.18 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -32.64 341.91 -8.71 -41.35 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.11 Total: -1.82 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -1.22 Total: -5.38 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.18 Total: -43.25 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 0.55 SS G_CDS: -2.26 Total: -1.72 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.51 Total: -1.57 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.64 -8.71 -41.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177469635.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.615 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds