Wall clock time and date at job start Tue Mar 31 2020 10:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99983 * 2 1 4 4 H 1.48504 * 109.46793 * 174.66256 * 3 2 1 5 5 H 1.48496 * 109.47189 * 294.66055 * 3 2 1 6 6 H 1.48495 * 109.46853 * 54.66261 * 3 2 1 7 7 C 1.37879 * 119.99946 * 180.02562 * 2 1 3 8 8 C 1.51267 * 120.85018 * 348.87958 * 7 2 1 9 9 C 1.53230 * 108.53542 * 231.32282 * 8 7 2 10 10 C 1.52954 * 109.40517 * 305.37363 * 9 8 7 11 11 H 1.09006 * 109.35732 * 303.52518 * 10 9 8 12 12 N 1.46507 * 109.41313 * 183.70672 * 10 9 8 13 13 C 1.34769 * 120.00293 * 84.64466 * 12 10 9 14 14 O 1.21287 * 120.00091 * 359.72285 * 13 12 10 15 15 C 1.50695 * 120.00222 * 180.02562 * 13 12 10 16 16 F 1.39895 * 109.47240 * 299.72814 * 15 13 12 17 17 F 1.39903 * 109.46838 * 59.72392 * 15 13 12 18 18 S 1.81401 * 109.47283 * 179.72370 * 15 13 12 19 19 O 1.42106 * 110.53961 * 180.02562 * 18 15 13 20 20 O 1.42094 * 110.54294 * 316.74964 * 18 15 13 21 21 F 1.60999 * 104.44815 * 68.37943 * 18 15 13 22 22 C 1.52953 * 109.81848 * 63.59642 * 10 9 8 23 23 C 1.51271 * 120.84869 * 168.85517 * 7 2 1 24 24 H 0.96998 * 120.00139 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.62560 * 351.04401 * 8 7 2 26 26 H 1.09003 * 109.62431 * 111.42129 * 8 7 2 27 27 H 1.09006 * 109.47994 * 185.38930 * 9 8 7 28 28 H 1.08997 * 109.48085 * 65.35447 * 9 8 7 29 29 H 0.97004 * 119.99468 * 264.64621 * 12 10 9 30 30 H 1.09000 * 109.48178 * 56.38376 * 22 10 9 31 31 H 1.09005 * 109.48538 * 176.40255 * 22 10 9 32 32 H 1.09000 * 109.62622 * 8.95855 * 23 7 2 33 33 H 1.09004 * 109.62788 * 248.38848 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7039 1.3494 0.1302 5 1 1.9907 2.3385 -1.2723 6 1 1.7953 2.4513 1.1421 7 6 2.0045 -1.1941 -0.0005 8 6 1.2888 -2.5031 0.2494 9 6 2.0331 -3.2623 1.3528 10 6 3.5043 -3.4129 0.9624 11 1 3.5724 -3.9120 -0.0042 12 7 4.1970 -4.2147 1.9743 13 6 4.1668 -5.5602 1.9044 14 8 3.5620 -6.1075 1.0067 15 6 4.8788 -6.3849 2.9455 16 9 6.2442 -6.0809 2.9276 17 9 4.3531 -6.0955 4.2093 18 16 4.6469 -8.1472 2.5833 19 8 5.3097 -8.9470 3.5531 20 8 3.2990 -8.4078 2.2167 21 9 5.4815 -8.3921 1.2285 22 6 4.1600 -2.0341 0.8700 23 6 3.4958 -1.2286 -0.2516 24 1 -0.4850 0.8400 -0.0004 25 1 0.2650 -2.3057 0.5672 26 1 1.2803 -3.0961 -0.6652 27 1 1.5876 -4.2491 1.4791 28 1 1.9601 -2.7078 2.2883 29 1 4.6773 -3.7770 2.6945 30 1 4.0367 -1.5087 1.8170 31 1 5.2222 -2.1503 0.6545 32 1 3.8901 -0.2124 -0.2555 33 1 3.6946 -1.7051 -1.2116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179619908.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:26 Heat of formation + Delta-G solvation = -245.043070 kcal Electronic energy + Delta-G solvation = -25307.563483 eV Core-core repulsion = 20853.417304 eV Total energy + Delta-G solvation = -4454.146179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.058 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -50.11779 -48.89778 -48.04443 -40.28649 -38.30373 -37.21181 -37.17798 -34.23915 -31.92573 -29.90804 -29.48620 -27.28407 -23.03814 -21.96578 -21.34434 -20.99378 -20.10551 -19.63418 -19.08884 -18.81845 -17.89982 -17.15962 -16.46696 -16.26229 -15.86143 -15.38352 -15.18535 -14.81796 -14.74723 -14.65712 -14.57238 -14.44854 -13.87119 -13.54640 -13.36604 -13.21369 -13.08124 -13.05272 -12.48002 -12.28354 -12.14038 -11.87676 -11.33564 -11.09106 -10.89409 -10.62794 -10.32659 -10.11017 -9.54314 -9.46520 -9.07854 -8.63635 -8.50390 -6.22116 -4.12713 -1.51831 1.45573 1.69778 1.97136 2.19200 2.81497 3.17754 3.25223 3.28654 3.30195 3.52007 3.78336 4.27613 5.03597 5.33937 5.58508 5.83387 5.94605 6.25575 6.38755 6.45650 6.57157 6.76955 6.88273 6.92666 7.12614 7.24186 7.45595 7.55558 7.66573 7.72790 8.25676 8.84415 9.42415 10.87131 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.032768 B = 0.003592 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.278430 B = 7792.361190 C = 8045.143545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.079 3.921 3 Si 0.879 3.121 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.495 4.495 8 C 0.015 3.985 9 C -0.119 4.119 10 C 0.146 3.854 11 H 0.090 0.910 12 N -0.676 5.676 13 C 0.479 3.521 14 O -0.486 6.486 15 C -0.223 4.223 16 F -0.146 7.146 17 F -0.139 7.139 18 S 2.603 3.397 19 O -0.878 6.878 20 O -0.847 6.847 21 F -0.443 7.443 22 C -0.115 4.115 23 C -0.020 4.020 24 H 0.265 0.735 25 H 0.058 0.942 26 H 0.009 0.991 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.405 0.595 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.670 -11.923 6.807 18.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.125 4.125 3 Si 0.707 3.293 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.514 4.514 8 C -0.023 4.023 9 C -0.157 4.157 10 C 0.045 3.955 11 H 0.108 0.892 12 N -0.324 5.324 13 C 0.256 3.744 14 O -0.362 6.362 15 C -0.339 4.339 16 F -0.127 7.127 17 F -0.120 7.120 18 S 2.676 3.324 19 O -0.877 6.877 20 O -0.845 6.845 21 F -0.443 7.443 22 C -0.154 4.154 23 C -0.058 4.058 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.240 0.760 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 10.994 -12.720 6.065 17.873 hybrid contribution 0.950 2.021 0.888 2.403 sum 11.944 -10.699 6.952 17.477 Atomic orbital electron populations 1.69896 1.06285 1.27060 1.48548 1.24859 0.94627 0.98626 0.94356 0.86744 0.80898 0.83671 0.77941 1.18154 1.20814 1.21168 1.20005 0.90837 0.92040 1.48540 1.19320 0.97351 0.93298 0.92358 1.22059 0.92836 0.99166 1.01673 1.21538 0.93204 0.90923 0.89878 0.89152 1.46457 1.51286 1.04156 1.30486 1.19911 0.83136 0.85578 0.85817 1.91002 1.41782 1.70276 1.33117 1.34378 0.82848 1.27662 0.89022 1.93200 1.27680 1.95391 1.96473 1.93209 1.85461 1.95287 1.38011 1.07988 0.75650 0.75658 0.73056 1.93830 1.75552 1.58875 1.59413 1.93873 1.32180 1.77889 1.80582 1.93673 1.87133 1.93906 1.69570 1.21937 0.97124 0.93954 1.02343 1.19915 0.96100 0.96499 0.93304 0.92485 0.92346 0.97222 0.94079 0.92757 0.75973 0.92201 0.94036 0.93448 0.95999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.45 12.82 55.43 0.71 -23.74 16 2 C 0.08 2.05 5.44 -17.82 -0.10 1.95 16 3 Si 0.88 19.59 27.95 -169.99 -4.75 14.84 16 4 H -0.26 -5.35 5.58 56.52 0.32 -5.04 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.50 -12.26 5.48 -98.92 -0.54 -12.80 16 8 C 0.01 0.35 5.93 -27.49 -0.16 0.19 16 9 C -0.12 -2.39 5.50 -26.64 -0.15 -2.54 16 10 C 0.15 2.57 2.34 -67.97 -0.16 2.41 16 11 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 12 N -0.68 -9.69 5.07 -53.85 -0.27 -9.97 16 13 C 0.48 6.86 7.21 -10.99 -0.08 6.78 16 14 O -0.49 -8.23 14.58 -14.22 -0.21 -8.44 16 15 C -0.22 -2.46 2.55 36.00 0.09 -2.37 16 16 F -0.15 -1.46 17.09 2.25 0.04 -1.42 16 17 F -0.14 -1.47 17.09 2.25 0.04 -1.43 16 18 S 2.60 26.84 5.74 -107.50 -0.62 26.23 16 19 O -0.88 -9.59 18.16 -57.54 -1.05 -10.64 16 20 O -0.85 -11.09 16.81 -65.62 -1.10 -12.20 16 21 F -0.44 -4.50 17.85 2.25 0.04 -4.46 16 22 C -0.12 -2.03 5.40 -26.64 -0.14 -2.17 16 23 C -0.02 -0.43 5.65 -27.49 -0.16 -0.58 16 24 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 25 H 0.06 1.54 7.19 -51.93 -0.37 1.17 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.41 4.70 8.60 -40.82 -0.35 4.35 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 1.00 4.36 -51.93 -0.23 0.77 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 303.37 15.07 4.57 4.57 Total: -1.00 -29.76 303.37 -7.09 -36.85 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -3.10 Total: -1.08 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.39 Total: -9.12 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.44 Total: -33.71 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -2.36 Total: -31.27 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 0.12 Total: -7.31 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.75 Total: 14.84 kcal Atomic # 16 Polarization: 26.84 SS G_CDS: -0.62 Total: 26.23 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.76 -7.09 -36.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179619908.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.193 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds