Wall clock time and date at job start Tue Mar 31 2020 10:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99983 * 2 1 4 4 H 1.48504 * 109.46793 * 174.66256 * 3 2 1 5 5 H 1.48496 * 109.47189 * 294.66055 * 3 2 1 6 6 H 1.48495 * 109.46853 * 54.66261 * 3 2 1 7 7 C 1.37879 * 119.99946 * 180.02562 * 2 1 3 8 8 C 1.51267 * 120.85018 * 348.87958 * 7 2 1 9 9 C 1.53230 * 108.53542 * 231.32282 * 8 7 2 10 10 C 1.52954 * 109.40517 * 305.37363 * 9 8 7 11 11 H 1.09006 * 109.35732 * 303.52518 * 10 9 8 12 12 N 1.46507 * 109.41313 * 183.70672 * 10 9 8 13 13 C 1.34769 * 120.00293 * 84.64466 * 12 10 9 14 14 O 1.21287 * 120.00091 * 359.72285 * 13 12 10 15 15 C 1.50695 * 120.00222 * 180.02562 * 13 12 10 16 16 F 1.39895 * 109.47240 * 299.72814 * 15 13 12 17 17 F 1.39903 * 109.46838 * 59.72392 * 15 13 12 18 18 S 1.81401 * 109.47283 * 179.72370 * 15 13 12 19 19 O 1.42106 * 110.53961 * 180.02562 * 18 15 13 20 20 O 1.42094 * 110.54294 * 316.74964 * 18 15 13 21 21 F 1.60999 * 104.44815 * 68.37943 * 18 15 13 22 22 C 1.52953 * 109.81848 * 63.59642 * 10 9 8 23 23 C 1.51271 * 120.84869 * 168.85517 * 7 2 1 24 24 H 0.96998 * 120.00139 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.62560 * 351.04401 * 8 7 2 26 26 H 1.09003 * 109.62431 * 111.42129 * 8 7 2 27 27 H 1.09006 * 109.47994 * 185.38930 * 9 8 7 28 28 H 1.08997 * 109.48085 * 65.35447 * 9 8 7 29 29 H 0.97004 * 119.99468 * 264.64621 * 12 10 9 30 30 H 1.09000 * 109.48178 * 56.38376 * 22 10 9 31 31 H 1.09005 * 109.48538 * 176.40255 * 22 10 9 32 32 H 1.09000 * 109.62622 * 8.95855 * 23 7 2 33 33 H 1.09004 * 109.62788 * 248.38848 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7039 1.3494 0.1302 5 1 1.9907 2.3385 -1.2723 6 1 1.7953 2.4513 1.1421 7 6 2.0045 -1.1941 -0.0005 8 6 1.2888 -2.5031 0.2494 9 6 2.0331 -3.2623 1.3528 10 6 3.5043 -3.4129 0.9624 11 1 3.5724 -3.9120 -0.0042 12 7 4.1970 -4.2147 1.9743 13 6 4.1668 -5.5602 1.9044 14 8 3.5620 -6.1075 1.0067 15 6 4.8788 -6.3849 2.9455 16 9 6.2442 -6.0809 2.9276 17 9 4.3531 -6.0955 4.2093 18 16 4.6469 -8.1472 2.5833 19 8 5.3097 -8.9470 3.5531 20 8 3.2990 -8.4078 2.2167 21 9 5.4815 -8.3921 1.2285 22 6 4.1600 -2.0341 0.8700 23 6 3.4958 -1.2286 -0.2516 24 1 -0.4850 0.8400 -0.0004 25 1 0.2650 -2.3057 0.5672 26 1 1.2803 -3.0961 -0.6652 27 1 1.5876 -4.2491 1.4791 28 1 1.9601 -2.7078 2.2883 29 1 4.6773 -3.7770 2.6945 30 1 4.0367 -1.5087 1.8170 31 1 5.2222 -2.1503 0.6545 32 1 3.8901 -0.2124 -0.2555 33 1 3.6946 -1.7051 -1.2116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179619908.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:25 Heat of formation + Delta-G solvation = -266.823145 kcal Electronic energy + Delta-G solvation = -25308.507938 eV Core-core repulsion = 20853.417304 eV Total energy + Delta-G solvation = -4455.090634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.058 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.00180 -49.75358 -48.91039 -41.51245 -39.28462 -38.66033 -38.13284 -35.76252 -33.64789 -31.55362 -30.71527 -28.82383 -24.50504 -23.61285 -22.65468 -21.99674 -21.56277 -20.55721 -20.19085 -19.84538 -18.78989 -18.15839 -17.93673 -17.64075 -16.75039 -16.60883 -16.39001 -16.29673 -15.75532 -15.64101 -15.60716 -15.30241 -15.08899 -14.91027 -14.66991 -14.44565 -14.19130 -14.15265 -14.04710 -14.00945 -13.54131 -13.10880 -12.92565 -12.83361 -12.62313 -12.03152 -11.88850 -11.65162 -11.24376 -11.02471 -10.78201 -10.50510 -10.22365 -8.17511 -6.11927 -2.40440 0.39987 0.72624 0.95063 1.30860 1.41943 1.45576 1.54085 1.90421 2.33964 2.42773 2.55557 2.75237 3.11292 3.88486 4.08847 4.38197 4.58524 4.67287 4.88884 4.92065 5.00321 5.14578 5.27758 5.28376 5.56404 5.59389 5.74160 5.76506 5.83393 6.32032 6.44353 6.94089 7.46314 8.93772 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.032768 B = 0.003592 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.278430 B = 7792.361190 C = 8045.143545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.021 3.979 3 Si 0.938 3.062 4 H -0.226 1.226 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.503 4.503 8 C 0.011 3.989 9 C -0.109 4.109 10 C 0.156 3.844 11 H 0.078 0.922 12 N -0.669 5.669 13 C 0.475 3.525 14 O -0.514 6.514 15 C -0.206 4.206 16 F -0.134 7.134 17 F -0.132 7.132 18 S 2.634 3.366 19 O -0.878 6.878 20 O -0.874 6.874 21 F -0.439 7.439 22 C -0.108 4.108 23 C -0.024 4.024 24 H 0.262 0.738 25 H 0.022 0.978 26 H -0.006 1.006 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.422 0.578 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.694 -12.092 7.857 20.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.178 4.178 3 Si 0.764 3.236 4 H -0.149 1.149 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.522 4.522 8 C -0.027 4.027 9 C -0.148 4.148 10 C 0.053 3.947 11 H 0.097 0.903 12 N -0.319 5.319 13 C 0.253 3.747 14 O -0.392 6.392 15 C -0.322 4.322 16 F -0.115 7.115 17 F -0.113 7.113 18 S 2.707 3.293 19 O -0.876 6.876 20 O -0.872 6.872 21 F -0.438 7.438 22 C -0.146 4.146 23 C -0.062 4.062 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.013 0.987 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.260 0.740 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 14.069 -12.898 7.143 20.379 hybrid contribution -0.010 1.965 0.538 2.038 sum 14.059 -10.932 7.681 19.395 Atomic orbital electron populations 1.70054 1.08174 1.27586 1.51257 1.25716 0.95224 1.02252 0.94608 0.85815 0.81315 0.79282 0.77185 1.14941 1.21468 1.21716 1.20624 0.93054 0.91804 1.46751 1.19260 0.96277 0.94130 0.93043 1.21845 0.94654 0.98251 1.00008 1.21123 0.91636 0.91730 0.90164 0.90342 1.46130 1.51130 1.04226 1.30379 1.20329 0.82755 0.85587 0.86063 1.91001 1.42795 1.70902 1.34457 1.34022 0.82986 1.27028 0.88212 1.93242 1.26606 1.95304 1.96368 1.93240 1.85440 1.95244 1.37392 1.07085 0.74736 0.74908 0.72591 1.93823 1.75464 1.58687 1.59671 1.93844 1.33947 1.78349 1.81109 1.93666 1.86931 1.93818 1.69393 1.21801 0.98677 0.92906 1.01228 1.19923 0.93774 0.97701 0.94805 0.92864 0.95954 0.98746 0.94344 0.92641 0.74003 0.91326 0.90436 0.92804 0.95919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.66 12.82 21.45 0.28 -53.38 16 2 C 0.02 1.08 5.44 84.66 0.46 1.54 16 3 Si 0.94 39.89 27.95 68.60 1.92 41.81 16 4 H -0.23 -8.41 5.58 99.48 0.56 -7.85 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.50 -24.94 5.48 -16.17 -0.09 -25.03 16 8 C 0.01 0.54 5.93 30.11 0.18 0.72 16 9 C -0.11 -4.37 5.50 30.66 0.17 -4.20 16 10 C 0.16 5.21 2.34 44.96 0.11 5.31 16 11 H 0.08 2.85 7.58 -2.38 -0.02 2.83 16 12 N -0.67 -17.31 5.07 -442.67 -2.25 -19.56 16 13 C 0.47 12.54 7.21 87.66 0.63 13.17 16 14 O -0.51 -16.78 14.58 15.85 0.23 -16.55 16 15 C -0.21 -4.00 2.55 71.23 0.18 -3.82 16 16 F -0.13 -2.20 17.09 44.97 0.77 -1.43 16 17 F -0.13 -2.42 17.09 44.97 0.77 -1.65 16 18 S 2.63 49.17 5.74 -56.49 -0.32 48.84 16 19 O -0.88 -17.09 18.16 -127.65 -2.32 -19.41 16 20 O -0.87 -21.92 16.81 -119.93 -2.02 -23.94 16 21 F -0.44 -8.01 17.85 44.97 0.80 -7.21 16 22 C -0.11 -3.43 5.40 30.65 0.17 -3.26 16 23 C -0.02 -0.97 5.65 30.10 0.17 -0.80 16 24 H 0.26 14.37 8.31 -92.71 -0.77 13.59 16 25 H 0.02 1.23 7.19 -2.39 -0.02 1.21 16 26 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.42 8.18 8.60 -92.71 -0.80 7.38 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.05 2.08 4.36 -2.39 -0.01 2.07 16 33 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -64.94 303.37 0.07 -64.87 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 0.24 Total: 3.96 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 1.97 Total: -16.36 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -1.97 Total: -72.94 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -4.10 Total: -59.90 kcal Atomic # 9 Polarization: -12.64 SS G_CDS: 2.34 Total: -10.30 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.92 Total: 41.81 kcal Atomic # 16 Polarization: 49.17 SS G_CDS: -0.32 Total: 48.84 kcal Total: -64.94 0.07 -64.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179619908.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.950 kcal (2) G-P(sol) polarization free energy of solvation -64.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds