Wall clock time and date at job start Tue Mar 31 2020 10:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00390 * 2 1 4 4 H 1.48504 * 109.47198 * 269.99782 * 3 2 1 5 5 H 1.48502 * 109.47141 * 29.99616 * 3 2 1 6 6 H 1.48494 * 109.47393 * 150.00024 * 3 2 1 7 7 C 1.37885 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99858 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00075 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.39986 * 66.46334 * 9 7 2 11 11 O 1.42099 * 106.40474 * 293.54019 * 9 7 2 12 12 N 1.65606 * 107.21732 * 180.02562 * 9 7 2 13 13 C 1.47013 * 125.64811 * 270.03988 * 12 9 7 14 14 C 1.54365 * 107.29155 * 181.05709 * 13 12 9 15 15 C 1.55163 * 102.91821 * 22.14181 * 14 13 12 16 16 H 1.08996 * 111.00600 * 82.63637 * 15 14 13 17 17 C 1.50702 * 111.00278 * 206.45508 * 15 14 13 18 18 C 1.38234 * 120.00670 * 55.37268 * 17 15 14 19 19 C 1.38225 * 120.01137 * 180.02562 * 18 17 15 20 20 C 1.38265 * 120.02460 * 0.02562 * 19 18 17 21 21 C 1.38186 * 120.01321 * 0.02562 * 20 19 18 22 22 C 1.38325 * 120.00490 * 235.41332 * 17 15 14 23 23 Cl 1.73601 * 120.01311 * 0.02562 * 22 17 15 24 24 C 1.47419 * 125.64592 * 90.00250 * 12 9 7 25 25 H 0.97001 * 119.99566 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.88567 * 300.44468 * 13 12 9 27 27 H 1.09006 * 109.88437 * 61.45374 * 13 12 9 28 28 H 1.09000 * 110.70857 * 263.79984 * 14 13 12 29 29 H 1.08999 * 110.75929 * 140.50825 * 14 13 12 30 30 H 1.08002 * 119.99648 * 0.04205 * 18 17 15 31 31 H 1.07994 * 119.98535 * 180.27411 * 19 18 17 32 32 H 1.07995 * 119.98879 * 179.97438 * 20 19 18 33 33 H 1.08001 * 120.00337 * 179.97438 * 21 20 19 34 34 H 1.09000 * 110.36745 * 37.06677 * 24 12 9 35 35 H 1.08997 * 110.45893 * 274.78899 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4519 -2.7955 -1.2495 11 8 0.4508 -2.7950 1.2500 12 7 2.2482 -3.9355 0.0019 13 6 2.8317 -4.5643 -1.1920 14 6 3.8061 -5.6580 -0.7047 15 6 3.2939 -5.9660 0.7272 16 1 2.4585 -6.6656 0.7013 17 6 4.4068 -6.4898 1.5979 18 6 5.5682 -5.7560 1.7515 19 6 6.5892 -6.2367 2.5496 20 6 6.4498 -7.4518 3.1943 21 6 5.2897 -8.1867 3.0406 22 6 4.2667 -7.7055 2.2428 23 17 2.8092 -8.6284 2.0490 24 6 2.8308 -4.5656 1.2007 25 1 -0.4849 0.8401 -0.0004 26 1 2.0440 -5.0133 -1.7970 27 1 3.3698 -3.8192 -1.7780 28 1 4.8276 -5.2790 -0.6757 29 1 3.7400 -6.5436 -1.3367 30 1 5.6777 -4.8068 1.2480 31 1 7.4946 -5.6610 2.6728 32 1 7.2481 -7.8270 3.8174 33 1 5.1812 -9.1361 3.5440 34 1 2.0782 -4.6595 1.9836 35 1 3.6811 -3.9864 1.5604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:03 Heat of formation + Delta-G solvation = -74.830555 kcal Electronic energy + Delta-G solvation = -21836.509929 eV Core-core repulsion = 18372.310624 eV Total energy + Delta-G solvation = -3464.199306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.93110 -37.64226 -36.53012 -35.22522 -33.94952 -33.10218 -32.48404 -30.87491 -29.41661 -27.94169 -26.11424 -23.49271 -22.61357 -21.67755 -20.12715 -18.73321 -17.54996 -17.29600 -16.27026 -16.11140 -15.41582 -14.94927 -14.88852 -14.14981 -13.92669 -13.87420 -13.74994 -13.26334 -13.08045 -12.76940 -12.58559 -12.02730 -11.95537 -11.69182 -11.58771 -11.28488 -11.22468 -11.19527 -11.12883 -10.75524 -10.60511 -10.36779 -10.33183 -10.26078 -10.16105 -9.24711 -9.02555 -8.91431 -8.75262 -8.14241 -6.69301 -5.31640 0.99792 1.09598 2.04412 2.23785 3.06550 3.13127 3.19446 3.44765 4.05622 4.38765 4.59289 4.62910 4.68912 4.80083 4.94269 5.03705 5.14719 5.21427 5.25790 5.53333 5.60738 5.67422 5.80595 5.84375 5.93320 6.06057 6.08106 6.13495 6.19397 6.25665 6.33221 6.37171 6.50582 6.63738 6.88931 7.33421 7.47616 7.98035 8.89059 10.24311 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.020670 B = 0.004006 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.289986 B = 6987.345886 C = 7652.627198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.263 1.263 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.727 3.273 10 O -1.000 7.000 11 O -1.001 7.001 12 N -1.021 6.021 13 C 0.124 3.876 14 C -0.117 4.117 15 C -0.075 4.075 16 H 0.100 0.900 17 C -0.054 4.054 18 C -0.102 4.102 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.033 4.033 23 Cl -0.067 7.067 24 C 0.133 3.867 25 H 0.291 0.709 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.080 0.920 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.786 -14.223 3.755 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.187 1.187 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.829 3.171 10 O -0.991 6.991 11 O -0.991 6.991 12 N -0.856 5.856 13 C -0.002 4.002 14 C -0.156 4.156 15 C -0.095 4.095 16 H 0.119 0.881 17 C -0.055 4.055 18 C -0.120 4.120 19 C -0.131 4.131 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.059 4.059 23 Cl -0.038 7.038 24 C 0.007 3.993 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.154 0.846 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.098 0.902 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.447 -14.296 3.724 19.318 hybrid contribution 0.895 1.146 0.038 1.455 sum 13.342 -13.150 3.762 19.107 Atomic orbital electron populations 1.69898 1.06787 1.30750 1.40146 1.24763 0.94474 1.00805 0.88509 0.86158 0.80154 0.80035 0.79165 1.19172 1.19937 1.18686 1.30618 1.06144 1.11813 1.66768 0.87995 1.00160 0.71604 0.72549 0.72767 1.93357 1.72481 1.87500 1.45764 1.93356 1.72456 1.87496 1.45824 1.59177 1.61712 1.54199 1.10552 1.21527 0.95873 0.94676 0.88146 1.22746 0.99381 0.98714 0.94750 1.21564 0.95927 0.97964 0.94028 0.88145 1.19604 0.95940 0.92770 0.97183 1.21106 0.92279 0.99987 0.98618 1.21252 0.99085 0.96047 0.96692 1.21081 0.97229 0.95065 1.00051 1.21010 0.92735 1.00645 0.98541 1.20858 0.89449 0.94092 1.01549 1.98368 1.36167 1.72816 1.96497 1.21846 0.98314 0.90439 0.88688 0.89862 0.91707 0.91707 0.90586 0.90372 0.84607 0.85408 0.85342 0.85125 0.90153 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.10 13.19 55.43 0.73 -24.37 16 2 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 3 Si 0.92 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 7 C -1.02 -28.35 9.75 30.60 0.30 -28.05 16 8 H 0.10 2.59 7.81 -52.49 -0.41 2.18 16 9 S 2.73 73.88 5.22 -107.50 -0.56 73.32 16 10 O -1.00 -29.66 17.60 -57.17 -1.01 -30.66 16 11 O -1.00 -29.73 17.34 -57.17 -0.99 -30.72 16 12 N -1.02 -21.07 3.70 -111.40 -0.41 -21.48 16 13 C 0.12 2.08 6.99 -3.05 -0.02 2.06 16 14 C -0.12 -1.50 6.36 -24.87 -0.16 -1.65 16 15 C -0.07 -1.04 3.13 -89.62 -0.28 -1.32 16 16 H 0.10 1.43 6.29 -51.93 -0.33 1.10 16 17 C -0.05 -0.65 5.00 -104.59 -0.52 -1.17 16 18 C -0.10 -1.09 8.27 -39.59 -0.33 -1.42 16 19 C -0.11 -1.01 10.05 -39.58 -0.40 -1.41 16 20 C -0.12 -0.98 10.05 -39.59 -0.40 -1.38 16 21 C -0.11 -1.06 9.83 -39.55 -0.39 -1.45 16 22 C -0.03 -0.38 6.31 -39.50 -0.25 -0.63 16 23 Cl -0.07 -0.79 27.05 -51.86 -1.40 -2.19 16 24 C 0.13 2.32 6.52 -2.53 -0.02 2.30 16 25 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 0.85 6.88 -51.93 -0.36 0.49 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.14 1.38 7.02 -52.49 -0.37 1.01 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.08 1.48 7.78 -51.93 -0.40 1.08 16 35 H 0.06 0.99 6.95 -51.93 -0.36 0.63 16 LS Contribution 322.33 15.07 4.86 4.86 Total: -1.00 -35.04 322.33 -10.26 -45.30 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -3.90 Total: 0.85 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: -2.56 Total: -30.50 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.32 Total: -45.84 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -2.00 Total: -61.39 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 73.88 SS G_CDS: -0.56 Total: 73.32 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.40 Total: -2.19 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.04 -10.26 -45.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.531 kcal (2) G-P(sol) polarization free energy of solvation -35.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds