Wall clock time and date at job start Tue Mar 31 2020 10:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00390 * 2 1 4 4 H 1.48504 * 109.47198 * 269.99782 * 3 2 1 5 5 H 1.48502 * 109.47141 * 29.99616 * 3 2 1 6 6 H 1.48494 * 109.47393 * 150.00024 * 3 2 1 7 7 C 1.37885 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99858 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00075 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.39986 * 66.46334 * 9 7 2 11 11 O 1.42099 * 106.40474 * 293.54019 * 9 7 2 12 12 N 1.65606 * 107.21732 * 180.02562 * 9 7 2 13 13 C 1.47013 * 125.64811 * 270.03988 * 12 9 7 14 14 C 1.54365 * 107.29155 * 181.05709 * 13 12 9 15 15 C 1.55163 * 102.91821 * 22.14181 * 14 13 12 16 16 H 1.08996 * 111.00600 * 82.63637 * 15 14 13 17 17 C 1.50702 * 111.00278 * 206.45508 * 15 14 13 18 18 C 1.38234 * 120.00670 * 55.37268 * 17 15 14 19 19 C 1.38225 * 120.01137 * 180.02562 * 18 17 15 20 20 C 1.38265 * 120.02460 * 0.02562 * 19 18 17 21 21 C 1.38186 * 120.01321 * 0.02562 * 20 19 18 22 22 C 1.38325 * 120.00490 * 235.41332 * 17 15 14 23 23 Cl 1.73601 * 120.01311 * 0.02562 * 22 17 15 24 24 C 1.47419 * 125.64592 * 90.00250 * 12 9 7 25 25 H 0.97001 * 119.99566 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.88567 * 300.44468 * 13 12 9 27 27 H 1.09006 * 109.88437 * 61.45374 * 13 12 9 28 28 H 1.09000 * 110.70857 * 263.79984 * 14 13 12 29 29 H 1.08999 * 110.75929 * 140.50825 * 14 13 12 30 30 H 1.08002 * 119.99648 * 0.04205 * 18 17 15 31 31 H 1.07994 * 119.98535 * 180.27411 * 19 18 17 32 32 H 1.07995 * 119.98879 * 179.97438 * 20 19 18 33 33 H 1.08001 * 120.00337 * 179.97438 * 21 20 19 34 34 H 1.09000 * 110.36745 * 37.06677 * 24 12 9 35 35 H 1.08997 * 110.45893 * 274.78899 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4519 -2.7955 -1.2495 11 8 0.4508 -2.7950 1.2500 12 7 2.2482 -3.9355 0.0019 13 6 2.8317 -4.5643 -1.1920 14 6 3.8061 -5.6580 -0.7047 15 6 3.2939 -5.9660 0.7272 16 1 2.4585 -6.6656 0.7013 17 6 4.4068 -6.4898 1.5979 18 6 5.5682 -5.7560 1.7515 19 6 6.5892 -6.2367 2.5496 20 6 6.4498 -7.4518 3.1943 21 6 5.2897 -8.1867 3.0406 22 6 4.2667 -7.7055 2.2428 23 17 2.8092 -8.6284 2.0490 24 6 2.8308 -4.5656 1.2007 25 1 -0.4849 0.8401 -0.0004 26 1 2.0440 -5.0133 -1.7970 27 1 3.3698 -3.8192 -1.7780 28 1 4.8276 -5.2790 -0.6757 29 1 3.7400 -6.5436 -1.3367 30 1 5.6777 -4.8068 1.2480 31 1 7.4946 -5.6610 2.6728 32 1 7.2481 -7.8270 3.8174 33 1 5.1812 -9.1361 3.5440 34 1 2.0782 -4.6595 1.9836 35 1 3.6811 -3.9864 1.5604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192961030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:03 Heat of formation + Delta-G solvation = -99.158947 kcal Electronic energy + Delta-G solvation = -21837.564888 eV Core-core repulsion = 18372.310624 eV Total energy + Delta-G solvation = -3465.254264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84059 -38.81549 -37.46923 -37.37505 -36.19428 -35.21326 -33.58748 -31.61288 -30.65873 -29.09808 -28.27843 -24.46573 -23.51138 -22.93597 -21.15517 -20.76343 -19.29726 -18.42802 -18.11034 -17.13977 -17.05035 -16.25640 -16.14938 -15.93983 -15.54958 -14.74752 -14.65568 -14.52271 -14.40118 -14.19611 -14.01562 -13.75754 -13.32809 -13.02454 -12.93777 -12.65740 -12.58550 -12.53481 -12.38188 -12.30995 -12.26044 -12.21019 -12.13956 -11.65395 -11.34404 -11.26804 -11.01615 -9.81776 -9.78532 -9.54444 -8.76547 -7.51958 0.17307 0.27584 0.35532 1.21665 1.32907 1.34038 1.50387 2.19465 2.55299 2.69122 2.83544 3.51831 3.62979 3.70119 3.78492 3.99083 4.15645 4.23962 4.34134 4.35807 4.44980 4.47973 4.60015 4.65315 4.77531 4.87874 4.92800 5.05182 5.05453 5.13635 5.23474 5.34724 5.37213 5.52436 5.56584 5.77743 5.88506 5.93341 6.74874 8.18948 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.020670 B = 0.004006 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.289986 B = 6987.345886 C = 7652.627198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.994 3.006 4 H -0.253 1.253 5 H -0.262 1.262 6 H -0.246 1.246 7 C -1.039 5.039 8 H 0.121 0.879 9 S 2.730 3.270 10 O -1.039 7.039 11 O -1.041 7.041 12 N -1.023 6.023 13 C 0.110 3.890 14 C -0.102 4.102 15 C -0.064 4.064 16 H 0.091 0.909 17 C -0.071 4.071 18 C -0.111 4.111 19 C -0.110 4.110 20 C -0.108 4.108 21 C -0.114 4.114 22 C -0.047 4.047 23 Cl -0.080 7.080 24 C 0.124 3.876 25 H 0.300 0.700 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.140 0.860 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.147 0.853 34 H 0.058 0.942 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.474 -14.306 4.246 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.812 3.188 4 H -0.177 1.177 5 H -0.187 1.187 6 H -0.169 1.169 7 C -1.173 5.173 8 H 0.139 0.861 9 S 2.833 3.167 10 O -1.029 7.029 11 O -1.032 7.032 12 N -0.862 5.862 13 C -0.015 4.015 14 C -0.141 4.141 15 C -0.084 4.084 16 H 0.109 0.891 17 C -0.072 4.072 18 C -0.129 4.129 19 C -0.128 4.128 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.074 4.074 23 Cl -0.051 7.051 24 C -0.001 4.001 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.158 0.842 31 H 0.172 0.828 32 H 0.178 0.822 33 H 0.165 0.835 34 H 0.077 0.923 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.123 -14.408 4.213 22.029 hybrid contribution -0.195 1.060 -0.069 1.080 sum 15.928 -13.348 4.144 21.191 Atomic orbital electron populations 1.69999 1.08901 1.32445 1.41387 1.26101 0.95416 1.05536 0.87435 0.85080 0.79131 0.74446 0.80183 1.17668 1.18654 1.16887 1.30947 1.07209 1.12361 1.66770 0.86092 0.99611 0.72248 0.73420 0.71378 1.93293 1.74376 1.88331 1.46943 1.93291 1.74407 1.88335 1.47120 1.58597 1.61113 1.53192 1.13272 1.21878 0.96639 0.95993 0.86947 1.22742 0.99158 0.98085 0.94070 1.21394 0.96625 0.95362 0.95060 0.89051 1.19454 0.95967 0.93627 0.98194 1.21253 0.92264 1.00106 0.99238 1.21591 0.99365 0.96302 0.95518 1.21490 0.97317 0.94452 0.99336 1.21295 0.92539 1.01470 0.97959 1.21031 0.89672 0.94202 1.02491 1.98362 1.37102 1.73052 1.96614 1.22104 0.97996 0.92885 0.87096 0.89027 0.92395 0.91026 0.88267 0.87960 0.84182 0.82787 0.82223 0.83495 0.92349 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.44 13.19 21.45 0.28 -54.16 16 2 C 0.07 3.82 5.46 84.66 0.46 4.28 16 3 Si 0.99 41.38 29.54 68.60 2.03 43.41 16 4 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 7 C -1.04 -58.34 9.75 67.74 0.66 -57.68 16 8 H 0.12 6.07 7.81 -2.91 -0.02 6.05 16 9 S 2.73 153.46 5.22 -56.49 -0.29 153.16 16 10 O -1.04 -64.33 17.60 -128.00 -2.25 -66.58 16 11 O -1.04 -64.93 17.34 -128.00 -2.22 -67.15 16 12 N -1.02 -43.10 3.70 -506.37 -1.87 -44.97 16 13 C 0.11 3.68 6.99 86.75 0.61 4.29 16 14 C -0.10 -2.42 6.36 31.80 0.20 -2.22 16 15 C -0.06 -1.75 3.13 -10.14 -0.03 -1.78 16 16 H 0.09 2.62 6.29 -2.39 -0.02 2.61 16 17 C -0.07 -1.61 5.00 -19.84 -0.10 -1.71 16 18 C -0.11 -2.07 8.27 22.27 0.18 -1.89 16 19 C -0.11 -1.55 10.05 22.27 0.22 -1.33 16 20 C -0.11 -1.40 10.05 22.26 0.22 -1.18 16 21 C -0.11 -1.88 9.83 22.29 0.22 -1.66 16 22 C -0.05 -1.02 6.31 22.32 0.14 -0.88 16 23 Cl -0.08 -1.85 27.05 -2.72 -0.07 -1.93 16 24 C 0.12 4.38 6.52 86.86 0.57 4.94 16 25 H 0.30 16.28 8.31 -92.71 -0.77 15.51 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.10 1.92 6.88 -2.39 -0.02 1.90 16 29 H 0.10 1.97 8.14 -2.39 -0.02 1.96 16 30 H 0.14 2.44 7.02 -2.91 -0.02 2.42 16 31 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 32 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 34 H 0.06 2.27 7.78 -2.39 -0.02 2.25 16 35 H 0.08 2.46 6.95 -2.39 -0.02 2.44 16 Total: -1.00 -79.04 322.33 0.07 -78.97 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 1.11 Total: 16.06 kcal Atomic # 6 Polarization: -60.17 SS G_CDS: 3.36 Total: -56.81 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -1.59 Total: -99.13 kcal Atomic # 8 Polarization: -129.26 SS G_CDS: -4.47 Total: -133.73 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 153.46 SS G_CDS: -0.29 Total: 153.16 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.07 Total: -1.93 kcal Total: -79.04 0.07 -78.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.189 kcal (2) G-P(sol) polarization free energy of solvation -79.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds