Wall clock time and date at job start Tue Mar 31 2020 10:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99638 * 2 1 4 4 H 1.48504 * 109.47074 * 269.99946 * 3 2 1 5 5 H 1.48502 * 109.47436 * 29.99980 * 3 2 1 6 6 H 1.48500 * 109.46935 * 150.00215 * 3 2 1 7 7 C 1.37877 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99755 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99916 * 179.97438 * 7 2 1 10 10 O 1.42099 * 106.39814 * 66.46190 * 9 7 2 11 11 O 1.42092 * 106.40349 * 293.54691 * 9 7 2 12 12 N 1.65597 * 107.21782 * 180.02562 * 9 7 2 13 13 C 1.47426 * 125.64630 * 269.96522 * 12 9 7 14 14 C 1.54909 * 104.83106 * 155.90644 * 13 12 9 15 15 C 1.55162 * 101.58396 * 37.00765 * 14 13 12 16 16 C 1.47015 * 125.64887 * 90.00076 * 12 9 7 17 17 H 1.09007 * 109.88426 * 300.59738 * 16 12 9 18 18 C 1.50702 * 109.88482 * 61.60470 * 16 12 9 19 19 C 1.38237 * 120.00143 * 25.02358 * 18 16 12 20 20 C 1.38221 * 120.01233 * 179.97438 * 19 18 16 21 21 C 1.38263 * 120.02714 * 359.97438 * 20 19 18 22 22 C 1.38195 * 120.01003 * 359.97438 * 21 20 19 23 23 C 1.38326 * 120.01026 * 204.99957 * 18 16 12 24 24 Cl 1.73600 * 120.01508 * 0.02562 * 23 18 16 25 25 H 0.96999 * 119.99990 * 0.02562 * 1 2 3 26 26 H 1.09005 * 110.36123 * 274.74337 * 13 12 9 27 27 H 1.08992 * 110.36953 * 37.06635 * 13 12 9 28 28 H 1.09000 * 111.00510 * 155.07623 * 14 13 12 29 29 H 1.08999 * 111.00418 * 278.89119 * 14 13 12 30 30 H 1.08999 * 110.71759 * 206.13691 * 15 14 13 31 31 H 1.08994 * 110.72224 * 82.85943 * 15 14 13 32 32 H 1.08003 * 119.99789 * 359.97438 * 19 18 16 33 33 H 1.08002 * 119.98422 * 180.02562 * 20 19 18 34 34 H 1.07999 * 119.99487 * 180.27557 * 21 20 19 35 35 H 1.08002 * 120.00463 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 16 3.7667 -1.1940 -0.0001 10 8 4.1683 -0.6487 1.2491 11 8 4.1674 -0.6502 -1.2503 12 7 4.2569 -2.7757 0.0000 13 6 4.5124 -3.5959 1.1981 14 6 4.3253 -5.0589 0.7245 15 6 4.9187 -5.0008 -0.7081 16 6 4.5101 -3.5944 -1.1946 17 1 3.6055 -3.6571 -1.7996 18 6 5.6269 -2.9878 -2.0044 19 6 6.5685 -2.1836 -1.3898 20 6 7.5932 -1.6275 -2.1323 21 6 7.6774 -1.8756 -3.4899 22 6 6.7373 -2.6802 -4.1051 23 6 5.7103 -3.2359 -3.3627 24 17 4.5282 -4.2456 -4.1352 25 1 -0.4850 0.8400 -0.0004 26 1 5.5306 -3.4398 1.5545 27 1 3.7942 -3.3562 1.9822 28 1 4.8890 -5.7482 1.3531 29 1 3.2698 -5.3297 0.7001 30 1 4.4766 -5.7711 -1.3400 31 1 6.0038 -5.0992 -0.6803 32 1 6.5035 -1.9898 -0.3293 33 1 8.3288 -0.9997 -1.6516 34 1 8.4808 -1.4445 -4.0687 35 1 6.8029 -2.8736 -5.1657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961534.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:46 Heat of formation + Delta-G solvation = -52.733789 kcal Electronic energy + Delta-G solvation = -22958.317648 eV Core-core repulsion = 19495.076530 eV Total energy + Delta-G solvation = -3463.241118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.70723 -37.58087 -36.23955 -35.64666 -34.43618 -33.03036 -31.69304 -30.74452 -30.25967 -27.63962 -26.38743 -23.08698 -22.41056 -21.38399 -20.64071 -18.67043 -17.80358 -16.81349 -16.73362 -15.97777 -15.26236 -15.06038 -14.81768 -14.17607 -13.79722 -13.60691 -13.56918 -13.30648 -13.00127 -12.91086 -12.75945 -12.26746 -11.88323 -11.45209 -11.36601 -11.27316 -11.27139 -11.11565 -10.91705 -10.80501 -10.69998 -10.58687 -10.45856 -10.41850 -9.85361 -9.21218 -9.15357 -8.71403 -8.48529 -8.21815 -6.80408 -5.33660 1.36646 1.47985 1.95672 2.32868 3.05654 3.16943 3.24861 3.80631 3.94401 4.19162 4.56677 4.69302 4.81880 4.93401 5.00463 5.13459 5.21364 5.40424 5.44998 5.51537 5.63512 5.73646 5.85776 5.88180 5.96967 6.01202 6.04646 6.14237 6.18228 6.34576 6.39105 6.47565 6.61975 6.78917 6.98818 7.20247 7.48928 8.22143 8.70553 10.32169 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.014876 B = 0.006526 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.808220 B = 4289.323344 C = 4645.239182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.153 3.847 3 Si 0.799 3.201 4 H -0.245 1.245 5 H -0.254 1.254 6 H -0.221 1.221 7 C -1.017 5.017 8 H 0.121 0.879 9 S 2.684 3.316 10 O -1.005 7.005 11 O -0.994 6.994 12 N -1.006 6.006 13 C 0.123 3.877 14 C -0.130 4.130 15 C -0.116 4.116 16 C 0.190 3.810 17 H 0.091 0.909 18 C -0.067 4.067 19 C -0.085 4.085 20 C -0.112 4.112 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.024 4.024 24 Cl -0.074 7.074 25 H 0.280 0.720 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.513 -9.549 -3.963 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.066 4.066 3 Si 0.619 3.381 4 H -0.169 1.169 5 H -0.178 1.178 6 H -0.143 1.143 7 C -1.151 5.151 8 H 0.139 0.861 9 S 2.788 3.212 10 O -0.995 6.995 11 O -0.984 6.984 12 N -0.841 5.841 13 C -0.003 4.003 14 C -0.169 4.169 15 C -0.155 4.155 16 C 0.083 3.917 17 H 0.109 0.891 18 C -0.069 4.069 19 C -0.103 4.103 20 C -0.130 4.130 21 C -0.133 4.133 22 C -0.130 4.130 23 C -0.051 4.051 24 Cl -0.045 7.045 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.784 -8.729 -4.003 15.989 hybrid contribution -0.727 0.566 -0.123 0.930 sum 12.057 -8.163 -4.126 15.134 Atomic orbital electron populations 1.69991 1.06545 1.28999 1.39655 1.24421 0.94786 0.98738 0.88650 0.87898 0.83587 0.84649 0.81937 1.16871 1.17823 1.14261 1.30542 1.15795 1.02147 1.66612 0.86139 1.01248 0.77185 0.69435 0.73370 1.93465 1.85453 1.75117 1.45490 1.93448 1.85115 1.75103 1.44743 1.58817 1.84192 1.30387 1.10683 1.21877 1.00781 0.89780 0.87872 1.22807 1.01940 0.96385 0.95747 1.22632 1.01302 0.94748 0.96835 1.20146 0.95290 0.90069 0.86224 0.89083 1.20034 0.96955 0.97743 0.92180 1.20858 0.93558 0.95752 1.00163 1.21162 0.98375 0.99154 0.94280 1.20996 0.98980 0.98518 0.94805 1.20919 0.94131 0.98204 0.99791 1.20612 0.93418 0.98819 0.92282 1.98344 1.57652 1.67470 1.81018 0.90910 0.92124 0.90296 0.90287 0.90316 0.90046 0.90668 0.85996 0.85671 0.85475 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.16 13.96 55.43 0.77 -23.39 16 2 C 0.15 4.50 5.47 -17.82 -0.10 4.40 16 3 Si 0.80 20.93 26.54 -169.99 -4.51 16.42 16 4 H -0.25 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.25 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.22 -5.85 5.60 56.52 0.32 -5.54 16 7 C -1.02 -29.10 10.29 30.60 0.31 -28.78 16 8 H 0.12 3.49 8.06 -52.49 -0.42 3.07 16 9 S 2.68 68.27 3.81 -107.50 -0.41 67.86 16 10 O -1.00 -27.12 15.60 -57.18 -0.89 -28.01 16 11 O -0.99 -26.51 14.24 -57.18 -0.81 -27.32 16 12 N -1.01 -19.95 2.37 -105.63 -0.25 -20.20 16 13 C 0.12 1.95 6.98 -2.53 -0.02 1.93 16 14 C -0.13 -1.59 7.08 -24.58 -0.17 -1.77 16 15 C -0.12 -1.49 6.47 -24.89 -0.16 -1.66 16 16 C 0.19 3.29 2.80 -68.11 -0.19 3.10 16 17 H 0.09 1.68 7.10 -51.93 -0.37 1.31 16 18 C -0.07 -1.16 3.87 -104.59 -0.41 -1.57 16 19 C -0.08 -1.45 7.83 -39.59 -0.31 -1.76 16 20 C -0.11 -1.63 10.05 -39.58 -0.40 -2.03 16 21 C -0.11 -1.50 10.05 -39.59 -0.40 -1.90 16 22 C -0.11 -1.55 9.83 -39.55 -0.39 -1.93 16 23 C -0.02 -0.39 6.31 -39.50 -0.25 -0.64 16 24 Cl -0.07 -1.07 27.39 -51.86 -1.42 -2.49 16 25 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 32 H 0.12 2.13 7.03 -52.48 -0.37 1.76 16 33 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -33.34 313.99 -9.44 -42.78 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.17 Total: 2.22 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: -2.47 Total: -32.60 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.52 Total: -43.59 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: -1.71 Total: -55.33 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.51 Total: 16.42 kcal Atomic # 16 Polarization: 68.27 SS G_CDS: -0.41 Total: 67.86 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.42 Total: -2.49 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.34 -9.44 -42.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961534.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.956 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds