Wall clock time and date at job start Tue Mar 31 2020 10:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99638 * 2 1 4 4 H 1.48504 * 109.47074 * 269.99946 * 3 2 1 5 5 H 1.48502 * 109.47436 * 29.99980 * 3 2 1 6 6 H 1.48500 * 109.46935 * 150.00215 * 3 2 1 7 7 C 1.37877 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99755 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99916 * 179.97438 * 7 2 1 10 10 O 1.42099 * 106.39814 * 66.46190 * 9 7 2 11 11 O 1.42092 * 106.40349 * 293.54691 * 9 7 2 12 12 N 1.65597 * 107.21782 * 180.02562 * 9 7 2 13 13 C 1.47426 * 125.64630 * 269.96522 * 12 9 7 14 14 C 1.54909 * 104.83106 * 155.90644 * 13 12 9 15 15 C 1.55162 * 101.58396 * 37.00765 * 14 13 12 16 16 C 1.47015 * 125.64887 * 90.00076 * 12 9 7 17 17 H 1.09007 * 109.88426 * 300.59738 * 16 12 9 18 18 C 1.50702 * 109.88482 * 61.60470 * 16 12 9 19 19 C 1.38237 * 120.00143 * 25.02358 * 18 16 12 20 20 C 1.38221 * 120.01233 * 179.97438 * 19 18 16 21 21 C 1.38263 * 120.02714 * 359.97438 * 20 19 18 22 22 C 1.38195 * 120.01003 * 359.97438 * 21 20 19 23 23 C 1.38326 * 120.01026 * 204.99957 * 18 16 12 24 24 Cl 1.73600 * 120.01508 * 0.02562 * 23 18 16 25 25 H 0.96999 * 119.99990 * 0.02562 * 1 2 3 26 26 H 1.09005 * 110.36123 * 274.74337 * 13 12 9 27 27 H 1.08992 * 110.36953 * 37.06635 * 13 12 9 28 28 H 1.09000 * 111.00510 * 155.07623 * 14 13 12 29 29 H 1.08999 * 111.00418 * 278.89119 * 14 13 12 30 30 H 1.08999 * 110.71759 * 206.13691 * 15 14 13 31 31 H 1.08994 * 110.72224 * 82.85943 * 15 14 13 32 32 H 1.08003 * 119.99789 * 359.97438 * 19 18 16 33 33 H 1.08002 * 119.98422 * 180.02562 * 20 19 18 34 34 H 1.07999 * 119.99487 * 180.27557 * 21 20 19 35 35 H 1.08002 * 120.00463 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 16 3.7667 -1.1940 -0.0001 10 8 4.1683 -0.6487 1.2491 11 8 4.1674 -0.6502 -1.2503 12 7 4.2569 -2.7757 0.0000 13 6 4.5124 -3.5959 1.1981 14 6 4.3253 -5.0589 0.7245 15 6 4.9187 -5.0008 -0.7081 16 6 4.5101 -3.5944 -1.1946 17 1 3.6055 -3.6571 -1.7996 18 6 5.6269 -2.9878 -2.0044 19 6 6.5685 -2.1836 -1.3898 20 6 7.5932 -1.6275 -2.1323 21 6 7.6774 -1.8756 -3.4899 22 6 6.7373 -2.6802 -4.1051 23 6 5.7103 -3.2359 -3.3627 24 17 4.5282 -4.2456 -4.1352 25 1 -0.4850 0.8400 -0.0004 26 1 5.5306 -3.4398 1.5545 27 1 3.7942 -3.3562 1.9822 28 1 4.8890 -5.7482 1.3531 29 1 3.2698 -5.3297 0.7001 30 1 4.4766 -5.7711 -1.3400 31 1 6.0038 -5.0992 -0.6803 32 1 6.5035 -1.9898 -0.3293 33 1 8.3288 -0.9997 -1.6516 34 1 8.4808 -1.4445 -4.0687 35 1 6.8029 -2.8736 -5.1657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192961534.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:46 Heat of formation + Delta-G solvation = -75.003939 kcal Electronic energy + Delta-G solvation = -22959.283354 eV Core-core repulsion = 19495.076530 eV Total energy + Delta-G solvation = -3464.206824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89660 -38.78670 -37.71058 -37.36921 -36.51262 -35.24297 -32.84918 -31.97863 -31.47166 -28.83100 -28.58713 -24.30559 -23.56725 -22.60550 -21.88343 -20.62753 -19.46941 -18.75209 -18.02555 -17.40554 -17.03730 -16.47989 -16.04021 -15.78423 -15.55174 -15.10783 -14.92830 -14.82721 -14.64396 -14.31844 -14.04734 -13.50997 -13.50260 -13.27015 -12.99981 -12.76030 -12.69892 -12.61432 -12.39780 -12.35788 -12.20754 -11.99795 -11.85142 -11.74929 -11.50586 -11.39327 -11.22970 -10.03735 -9.72473 -9.51523 -9.02219 -7.58181 0.01880 0.24228 0.35331 0.98244 1.08289 1.14476 1.18394 1.83117 2.35499 2.41986 2.71246 3.30723 3.51431 3.66269 3.69112 3.88865 4.10706 4.17037 4.23434 4.30580 4.41710 4.53204 4.62224 4.74816 4.80250 4.93158 4.98416 5.00776 5.04246 5.12267 5.29208 5.32523 5.35782 5.48018 5.53466 5.70416 5.90973 5.94943 6.47558 8.16115 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.014876 B = 0.006526 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.808220 B = 4289.323344 C = 4645.239182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.107 3.893 3 Si 0.824 3.176 4 H -0.238 1.238 5 H -0.216 1.216 6 H -0.229 1.229 7 C -1.046 5.046 8 H 0.099 0.901 9 S 2.709 3.291 10 O -1.025 7.025 11 O -1.009 7.009 12 N -1.008 6.008 13 C 0.106 3.894 14 C -0.118 4.118 15 C -0.106 4.106 16 C 0.180 3.820 17 H 0.071 0.929 18 C -0.089 4.089 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.108 4.108 22 C -0.112 4.112 23 C -0.042 4.042 24 Cl -0.070 7.070 25 H 0.292 0.708 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.148 0.852 34 H 0.166 0.834 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.643 -10.055 -4.683 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.109 4.109 3 Si 0.641 3.359 4 H -0.161 1.161 5 H -0.138 1.138 6 H -0.151 1.151 7 C -1.177 5.177 8 H 0.118 0.882 9 S 2.811 3.189 10 O -1.016 7.016 11 O -1.000 7.000 12 N -0.846 5.846 13 C -0.018 4.018 14 C -0.156 4.156 15 C -0.145 4.145 16 C 0.073 3.927 17 H 0.089 0.911 18 C -0.091 4.091 19 C -0.132 4.132 20 C -0.136 4.136 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.069 4.069 24 Cl -0.042 7.042 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.166 0.834 34 H 0.184 0.816 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 14.870 -9.225 -4.716 18.123 hybrid contribution -1.361 0.619 0.063 1.496 sum 13.509 -8.606 -4.653 16.679 Atomic orbital electron populations 1.70017 1.07450 1.30508 1.40386 1.25194 0.95686 1.01482 0.88558 0.87507 0.82919 0.82761 0.82752 1.16081 1.13759 1.15150 1.31164 1.18669 1.01475 1.66435 0.88231 1.00250 0.75375 0.70816 0.72475 1.93422 1.85065 1.76841 1.46250 1.93408 1.84619 1.76760 1.45188 1.58388 1.83456 1.29398 1.13311 1.22282 1.01549 0.91599 0.86413 1.22822 1.02587 0.94382 0.95838 1.22658 1.02470 0.92205 0.97122 1.20410 0.94961 0.92096 0.85199 0.91126 1.20091 0.97243 0.98779 0.92983 1.20956 0.95056 0.97156 1.00035 1.21535 0.98064 0.98885 0.95149 1.21460 0.99375 0.97358 0.94391 1.21340 0.93291 0.97346 1.01061 1.20834 0.94342 0.99620 0.92135 1.98337 1.57698 1.67366 1.80759 0.89780 0.90225 0.91445 0.86317 0.90536 0.88245 0.89018 0.87303 0.83381 0.81603 0.82574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -51.04 13.96 21.45 0.30 -50.74 16 2 C 0.11 6.42 5.47 84.65 0.46 6.88 16 3 Si 0.82 42.37 26.54 68.60 1.82 44.19 16 4 H -0.24 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.22 -9.68 7.11 99.48 0.71 -8.98 16 6 H -0.23 -12.06 5.60 99.48 0.56 -11.50 16 7 C -1.05 -61.92 10.29 67.73 0.70 -61.22 16 8 H 0.10 6.09 8.06 -2.91 -0.02 6.07 16 9 S 2.71 140.41 3.81 -56.49 -0.22 140.20 16 10 O -1.03 -56.16 15.60 -128.00 -2.00 -58.16 16 11 O -1.01 -54.57 14.24 -128.00 -1.82 -56.39 16 12 N -1.01 -40.34 2.37 -488.12 -1.16 -41.49 16 13 C 0.11 3.31 6.98 86.85 0.61 3.91 16 14 C -0.12 -2.64 7.08 31.99 0.23 -2.41 16 15 C -0.11 -2.52 6.47 31.79 0.21 -2.31 16 16 C 0.18 6.20 2.80 44.60 0.12 6.32 16 17 H 0.07 2.66 7.10 -2.38 -0.02 2.65 16 18 C -0.09 -3.03 3.87 -19.84 -0.08 -3.10 16 19 C -0.11 -3.81 7.83 22.27 0.17 -3.64 16 20 C -0.12 -3.22 10.05 22.27 0.22 -3.00 16 21 C -0.11 -2.48 10.05 22.27 0.22 -2.26 16 22 C -0.11 -2.81 9.83 22.29 0.22 -2.59 16 23 C -0.04 -1.29 6.31 22.32 0.14 -1.15 16 24 Cl -0.07 -1.99 27.39 -2.72 -0.07 -2.07 16 25 H 0.29 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 1.90 7.84 -2.39 -0.02 1.88 16 32 H 0.11 3.82 7.03 -2.91 -0.02 3.80 16 33 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 34 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 35 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -73.99 313.99 1.04 -72.96 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.95 Total: 16.06 kcal Atomic # 6 Polarization: -67.78 SS G_CDS: 3.23 Total: -64.56 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -0.86 Total: -92.23 kcal Atomic # 8 Polarization: -110.73 SS G_CDS: -3.82 Total: -114.55 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.82 Total: 44.19 kcal Atomic # 16 Polarization: 140.41 SS G_CDS: -0.22 Total: 140.20 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.07 Total: -2.07 kcal Total: -73.99 1.04 -72.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961534.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.048 kcal (2) G-P(sol) polarization free energy of solvation -73.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds