Wall clock time and date at job start Tue Mar 31 2020 10:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48499 * 109.47225 * 240.00161 * 3 2 1 5 5 H 1.48498 * 109.47182 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46908 * 120.00371 * 3 2 1 7 7 C 1.37878 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00248 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99975 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40136 * 66.60004 * 9 7 2 11 11 O 1.42097 * 106.40255 * 293.67860 * 9 7 2 12 12 N 1.65599 * 107.21977 * 180.13469 * 9 7 2 13 13 C 1.47428 * 125.64199 * 84.28404 * 12 9 7 14 14 C 1.54913 * 104.83042 * 204.09406 * 13 12 9 15 15 C 1.55163 * 101.58223 * 322.99089 * 14 13 12 16 16 C 1.47013 * 125.65356 * 264.24638 * 12 9 7 17 17 H 1.08998 * 109.88841 * 59.39856 * 16 12 9 18 18 C 1.50708 * 109.87913 * 298.39217 * 16 12 9 19 19 C 1.38232 * 120.00855 * 333.37785 * 18 16 12 20 20 C 1.38213 * 120.01651 * 179.97438 * 19 18 16 21 21 C 1.38274 * 120.02576 * 359.78713 * 20 19 18 22 22 C 1.38194 * 120.00656 * 0.46592 * 21 20 19 23 23 C 1.38334 * 120.00217 * 153.35904 * 18 16 12 24 24 Cl 1.73596 * 120.01931 * 359.97438 * 23 18 16 25 25 H 0.96996 * 120.00297 * 359.97438 * 1 2 3 26 26 H 1.09001 * 110.37114 * 322.92983 * 13 12 9 27 27 H 1.08997 * 110.36589 * 85.25864 * 13 12 9 28 28 H 1.09002 * 111.00618 * 81.06196 * 14 13 12 29 29 H 1.09003 * 111.00510 * 204.88555 * 14 13 12 30 30 H 1.09001 * 110.72180 * 277.14022 * 15 14 13 31 31 H 1.08998 * 110.72237 * 153.86372 * 15 14 13 32 32 H 1.07999 * 119.99227 * 359.97438 * 19 18 16 33 33 H 1.07992 * 119.99165 * 180.02562 * 20 19 18 34 34 H 1.07993 * 119.99303 * 180.25622 * 21 20 19 35 35 H 1.08007 * 120.00078 * 179.79186 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4535 -2.7965 -1.2514 11 8 0.4492 -2.7940 1.2481 12 7 2.2482 -3.9354 0.0025 13 6 2.9173 -4.4838 1.1963 14 6 4.2415 -5.0882 0.6661 15 6 3.7931 -5.6703 -0.7005 16 6 2.7443 -4.6468 -1.1846 17 1 3.2040 -3.9400 -1.8753 18 6 1.6063 -5.3625 -1.8659 19 6 0.5021 -5.7586 -1.1348 20 6 -0.5419 -6.4144 -1.7596 21 6 -0.4844 -6.6708 -3.1171 22 6 0.6214 -6.2799 -3.8481 23 6 1.6666 -5.6227 -3.2232 24 17 3.0524 -5.1245 -4.1424 25 1 -0.4850 0.8400 0.0004 26 1 3.1234 -3.6898 1.9141 27 1 2.3025 -5.2592 1.6531 28 1 4.9979 -4.3150 0.5321 29 1 4.6036 -5.8759 1.3269 30 1 3.3412 -6.6538 -0.5713 31 1 4.6331 -5.7186 -1.3934 32 1 0.4550 -5.5555 -0.0751 33 1 -1.4045 -6.7233 -1.1881 34 1 -1.3022 -7.1796 -3.6055 35 1 0.6677 -6.4832 -4.9078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961535.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:49 Heat of formation + Delta-G solvation = -68.035021 kcal Electronic energy + Delta-G solvation = -22850.407289 eV Core-core repulsion = 19386.502660 eV Total energy + Delta-G solvation = -3463.904629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.62204 -37.49213 -36.18793 -35.21413 -33.94027 -33.08649 -31.61617 -30.62495 -30.15356 -27.56233 -26.11456 -22.98734 -22.33465 -21.27109 -20.52669 -18.67520 -17.72351 -16.69543 -16.34708 -15.83053 -15.11976 -14.90652 -14.74424 -14.07920 -13.89932 -13.54533 -13.50327 -13.20586 -12.89705 -12.76962 -12.19274 -11.98037 -11.81313 -11.28931 -11.24318 -11.20763 -11.19070 -11.05991 -10.84961 -10.66773 -10.62188 -10.37559 -10.32266 -10.25789 -10.14572 -9.23383 -8.93562 -8.64952 -8.41930 -8.14224 -6.69154 -5.31409 1.43549 1.54414 2.22626 2.38154 3.08658 3.12655 3.18445 3.87847 4.06182 4.55624 4.63412 4.76337 4.88413 5.05694 5.14308 5.20507 5.29860 5.51024 5.58447 5.70187 5.80745 5.84225 5.92972 5.96260 6.03617 6.09039 6.16961 6.25733 6.30808 6.42572 6.46191 6.58442 6.71490 6.93666 7.06166 7.33597 7.46449 7.97746 8.89299 10.24464 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.005820 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.799525 B = 4810.124469 C = 4921.439701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.022 5.022 8 H 0.101 0.899 9 S 2.721 3.279 10 O -0.988 6.988 11 O -1.002 7.002 12 N -1.015 6.015 13 C 0.122 3.878 14 C -0.130 4.130 15 C -0.117 4.117 16 C 0.190 3.810 17 H 0.088 0.912 18 C -0.064 4.064 19 C -0.091 4.091 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.112 4.112 23 C -0.024 4.024 24 Cl -0.076 7.076 25 H 0.291 0.709 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.008 -12.842 -3.586 14.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.084 4.084 3 Si 0.742 3.258 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.188 1.188 7 C -1.156 5.156 8 H 0.119 0.881 9 S 2.823 3.177 10 O -0.978 6.978 11 O -0.993 6.993 12 N -0.849 5.849 13 C -0.004 4.004 14 C -0.169 4.169 15 C -0.156 4.156 16 C 0.083 3.917 17 H 0.106 0.894 18 C -0.067 4.067 19 C -0.109 4.109 20 C -0.129 4.129 21 C -0.134 4.134 22 C -0.130 4.130 23 C -0.051 4.051 24 Cl -0.047 7.047 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.945 -12.778 -3.648 14.178 hybrid contribution 0.955 1.453 -0.121 1.743 sum 5.900 -11.324 -3.769 13.313 Atomic orbital electron populations 1.69880 1.06760 1.30829 1.40108 1.24741 0.94472 1.00746 0.88486 0.86228 0.79962 0.79728 0.79844 1.18786 1.20027 1.18796 1.30606 1.06151 1.11922 1.66880 0.88069 1.00384 0.71753 0.72553 0.72989 1.93399 1.72192 1.87257 1.44965 1.93363 1.72226 1.87567 1.46145 1.59387 1.61623 1.52938 1.10971 1.21832 0.92314 0.98143 0.88074 1.22806 0.97565 1.00334 0.96170 1.22634 0.97625 0.98055 0.97255 1.20093 0.90874 0.93059 0.87684 0.89378 1.20057 0.97142 0.97572 0.91896 1.20931 0.92722 0.96992 1.00281 1.21181 0.98296 0.98450 0.94956 1.20996 0.97495 1.00769 0.94124 1.20915 0.92893 0.99183 1.00050 1.20606 0.90574 1.02479 0.91405 1.98334 1.42322 1.90309 1.73740 0.89833 0.90568 0.92273 0.90538 0.90455 0.90739 0.90244 0.85689 0.85610 0.85474 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.26 13.19 55.43 0.73 -24.53 16 2 C 0.13 3.80 5.46 -17.82 -0.10 3.70 16 3 Si 0.92 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 7 C -1.02 -28.84 9.75 30.60 0.30 -28.54 16 8 H 0.10 2.62 7.81 -52.49 -0.41 2.21 16 9 S 2.72 73.43 4.57 -107.50 -0.49 72.94 16 10 O -0.99 -28.79 15.78 -57.17 -0.90 -29.69 16 11 O -1.00 -29.53 17.68 -57.17 -1.01 -30.54 16 12 N -1.02 -20.87 2.37 -105.63 -0.25 -21.12 16 13 C 0.12 2.01 7.04 -2.53 -0.02 2.00 16 14 C -0.13 -1.63 7.09 -24.58 -0.17 -1.80 16 15 C -0.12 -1.55 6.47 -24.89 -0.16 -1.71 16 16 C 0.19 3.40 2.78 -68.10 -0.19 3.21 16 17 H 0.09 1.65 7.03 -51.93 -0.37 1.28 16 18 C -0.06 -1.17 3.80 -104.58 -0.40 -1.57 16 19 C -0.09 -1.64 8.17 -39.59 -0.32 -1.97 16 20 C -0.11 -1.71 10.05 -39.58 -0.40 -2.11 16 21 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 22 C -0.11 -1.62 9.83 -39.55 -0.39 -2.01 16 23 C -0.02 -0.39 6.31 -39.50 -0.25 -0.64 16 24 Cl -0.08 -1.14 27.36 -51.86 -1.42 -2.55 16 25 H 0.29 7.83 8.31 -40.82 -0.34 7.49 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.13 2.32 7.16 -52.49 -0.38 1.95 16 33 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 LS Contribution 321.65 15.07 4.85 4.85 Total: -1.00 -35.13 321.65 -10.09 -45.22 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.08 Total: 2.95 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: -2.50 Total: -33.44 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.48 Total: -45.65 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -1.91 Total: -60.23 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 73.43 SS G_CDS: -0.49 Total: 72.94 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.42 Total: -2.55 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.13 -10.09 -45.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961535.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.814 kcal (2) G-P(sol) polarization free energy of solvation -35.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds