Wall clock time and date at job start Tue Mar 31 2020 10:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99859 * 2 1 4 4 H 1.48505 * 109.46899 * 239.99895 * 3 2 1 5 5 H 1.48500 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47223 * 119.99832 * 3 2 1 7 7 C 1.37881 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99812 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99828 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40071 * 66.46078 * 9 7 2 11 11 O 1.42098 * 106.40261 * 293.53970 * 9 7 2 12 12 N 1.65595 * 107.21612 * 180.02562 * 9 7 2 13 13 C 1.47425 * 125.65014 * 90.02698 * 12 9 7 14 14 C 1.54908 * 104.92961 * 155.88559 * 13 12 9 15 15 C 1.55160 * 101.58344 * 36.95575 * 14 13 12 16 16 C 1.47192 * 125.73682 * 269.88624 * 12 9 7 17 17 H 1.08999 * 109.93981 * 300.50028 * 16 12 9 18 18 C 1.50696 * 109.79477 * 61.64471 * 16 12 9 19 19 C 1.38244 * 119.98367 * 38.96973 * 18 16 12 20 20 C 1.38216 * 120.01038 * 179.72275 * 19 18 16 21 21 C 1.38353 * 119.98496 * 0.54918 * 20 19 18 22 22 Cl 1.73604 * 120.01125 * 179.70596 * 21 20 19 23 23 C 1.38346 * 119.97815 * 359.72281 * 21 20 19 24 24 C 1.38218 * 119.98449 * 0.02562 * 23 21 20 25 25 H 0.96991 * 119.99792 * 0.02562 * 1 2 3 26 26 H 1.09002 * 110.36696 * 36.99206 * 13 12 9 27 27 H 1.08995 * 110.36608 * 274.78042 * 13 12 9 28 28 H 1.08995 * 111.00469 * 155.02585 * 14 13 12 29 29 H 1.09000 * 111.00368 * 278.84452 * 14 13 12 30 30 H 1.09004 * 110.71965 * 82.85866 * 15 14 13 31 31 H 1.08991 * 110.72311 * 205.96013 * 15 14 13 32 32 H 1.07997 * 119.99522 * 359.97438 * 19 18 16 33 33 H 1.08001 * 120.00929 * 180.26999 * 20 19 18 34 34 H 1.07998 * 120.00972 * 180.02562 * 23 21 20 35 35 H 1.07998 * 119.99337 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7200 0.0019 10 8 0.4510 -2.7961 -1.2475 11 8 0.4520 -2.7944 1.2519 12 7 2.2484 -3.9353 0.0030 13 6 2.8316 -4.5653 1.2015 14 6 3.2950 -5.9664 0.7305 15 6 3.8060 -5.6602 -0.7021 16 6 2.8306 -4.5690 -1.1912 17 1 2.0425 -5.0195 -1.7945 18 6 3.5764 -3.5408 -2.0022 19 6 4.3212 -2.5659 -1.3650 20 6 5.0101 -1.6261 -2.1084 21 6 4.9449 -1.6544 -3.4901 22 17 5.8037 -0.4696 -4.4243 23 6 4.1948 -2.6268 -4.1270 24 6 3.5105 -3.5693 -3.3827 25 1 -0.4849 0.8400 -0.0004 26 1 2.0798 -4.6580 1.9853 27 1 3.6820 -3.9849 1.5593 28 1 4.1006 -6.3436 1.3603 29 1 2.4599 -6.6665 0.7068 30 1 4.8273 -5.2802 -0.6743 31 1 3.7433 -6.5476 -1.3318 32 1 4.3681 -2.5411 -0.2864 33 1 5.5955 -0.8672 -1.6107 34 1 4.1439 -2.6496 -5.2056 35 1 2.9253 -4.3287 -3.8798 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:52 Heat of formation + Delta-G solvation = -71.007345 kcal Electronic energy + Delta-G solvation = -22889.357961 eV Core-core repulsion = 19425.324443 eV Total energy + Delta-G solvation = -3464.033519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.57853 -37.58270 -36.12482 -35.23848 -33.96288 -33.07423 -31.37341 -30.84391 -30.25551 -27.45991 -26.09923 -22.85579 -22.45896 -21.28808 -20.48757 -18.71249 -17.53011 -16.94520 -16.21242 -15.89618 -15.12020 -14.83979 -14.71770 -14.05043 -13.90372 -13.38343 -13.27931 -13.23192 -13.04084 -12.82140 -12.26538 -12.13090 -11.86979 -11.37899 -11.28598 -11.17904 -11.15442 -10.92953 -10.72926 -10.63584 -10.54340 -10.46275 -10.36317 -10.28401 -10.15892 -9.21529 -8.96858 -8.63077 -8.40125 -8.08946 -6.67920 -5.28585 1.42619 1.66088 2.21866 2.36234 3.09465 3.13929 3.19116 3.90407 4.07628 4.59377 4.65100 4.78142 4.89321 5.08844 5.11641 5.19401 5.31620 5.56630 5.66237 5.71577 5.79304 5.85744 5.92068 5.98139 6.02634 6.08625 6.20052 6.26616 6.31198 6.42120 6.51195 6.56546 6.72012 7.01166 7.12100 7.35468 7.45389 7.98384 8.91569 10.26106 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.010625 B = 0.008330 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.709561 B = 3360.561374 C = 5226.185511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.138 3.862 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.264 1.264 7 C -1.015 5.015 8 H 0.107 0.893 9 S 2.723 3.277 10 O -0.997 6.997 11 O -1.003 7.003 12 N -1.016 6.016 13 C 0.117 3.883 14 C -0.130 4.130 15 C -0.119 4.119 16 C 0.194 3.806 17 H 0.083 0.917 18 C -0.094 4.094 19 C -0.068 4.068 20 C -0.111 4.111 21 C -0.032 4.032 22 Cl -0.087 7.087 23 C -0.117 4.117 24 C -0.089 4.089 25 H 0.290 0.710 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.518 -8.178 -3.762 14.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.080 4.080 3 Si 0.734 3.266 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.188 1.188 7 C -1.148 5.148 8 H 0.125 0.875 9 S 2.825 3.175 10 O -0.988 6.988 11 O -0.994 6.994 12 N -0.850 5.850 13 C -0.009 4.009 14 C -0.169 4.169 15 C -0.158 4.158 16 C 0.087 3.913 17 H 0.101 0.899 18 C -0.096 4.096 19 C -0.086 4.086 20 C -0.130 4.130 21 C -0.059 4.059 22 Cl -0.058 7.058 23 C -0.136 4.136 24 C -0.107 4.107 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.383 -8.074 -3.824 13.697 hybrid contribution 0.941 1.632 -0.133 1.889 sum 11.323 -6.442 -3.957 13.615 Atomic orbital electron populations 1.69886 1.06777 1.30737 1.40323 1.24679 0.94342 1.00549 0.88461 0.86337 0.80169 0.80104 0.79953 1.18502 1.20157 1.18806 1.30680 1.06189 1.11412 1.66557 0.87527 1.00284 0.71710 0.72744 0.72764 1.93358 1.72410 1.87398 1.45628 1.93355 1.72535 1.87550 1.45966 1.59408 1.61109 1.54388 1.10118 1.21873 0.98123 0.92397 0.88468 1.22786 1.00907 0.97153 0.96039 1.22686 0.98936 0.97553 0.96611 1.20057 0.94091 0.90630 0.86496 0.89885 1.20358 0.97703 0.97494 0.94027 1.20986 0.94217 0.92908 1.00524 1.20955 1.00814 0.99581 0.91608 1.20861 0.99522 0.93481 0.92010 1.98335 1.76208 1.57716 1.73557 1.20881 0.97817 0.94816 1.00105 1.20883 0.98209 0.98553 0.93087 0.89914 0.90267 0.92236 0.90448 0.90823 0.90565 0.90442 0.84621 0.85374 0.85343 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.02 13.19 55.43 0.73 -24.29 16 2 C 0.14 3.82 5.46 -17.82 -0.10 3.72 16 3 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 7 C -1.01 -27.23 8.84 30.60 0.27 -26.96 16 8 H 0.11 2.56 4.98 -52.49 -0.26 2.30 16 9 S 2.72 72.12 4.90 -107.50 -0.53 71.59 16 10 O -1.00 -29.14 17.61 -57.17 -1.01 -30.14 16 11 O -1.00 -29.42 17.34 -57.17 -0.99 -30.41 16 12 N -1.02 -19.93 2.63 -105.52 -0.28 -20.21 16 13 C 0.12 1.84 7.10 -2.53 -0.02 1.82 16 14 C -0.13 -1.50 7.09 -24.58 -0.17 -1.67 16 15 C -0.12 -1.39 6.46 -24.89 -0.16 -1.56 16 16 C 0.19 3.17 3.05 -68.01 -0.21 2.96 16 17 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 18 C -0.09 -1.59 4.57 -104.62 -0.48 -2.07 16 19 C -0.07 -1.17 6.75 -39.59 -0.27 -1.44 16 20 C -0.11 -1.84 9.83 -39.55 -0.39 -2.23 16 21 C -0.03 -0.52 6.32 -39.50 -0.25 -0.77 16 22 Cl -0.09 -1.26 28.96 -51.86 -1.50 -2.76 16 23 C -0.12 -1.77 9.83 -39.55 -0.39 -2.16 16 24 C -0.09 -1.37 9.68 -39.59 -0.38 -1.76 16 25 H 0.29 7.78 8.31 -40.82 -0.34 7.44 16 26 H 0.08 1.30 7.78 -51.93 -0.40 0.90 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.83 7.79 -51.93 -0.40 0.43 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.14 2.28 6.68 -52.49 -0.35 1.93 16 33 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 34 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.13 1.69 8.04 -52.49 -0.42 1.27 16 LS Contribution 320.74 15.07 4.83 4.83 Total: -1.00 -34.64 320.74 -10.23 -44.87 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -3.93 Total: 2.92 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: -2.54 Total: -32.10 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.45 Total: -44.50 kcal Atomic # 8 Polarization: -58.56 SS G_CDS: -2.00 Total: -60.56 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 72.12 SS G_CDS: -0.53 Total: 71.59 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.50 Total: -2.76 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.64 -10.23 -44.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.134 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds