Wall clock time and date at job start Tue Mar 31 2020 10:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99700 * 2 1 4 4 H 1.48500 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46948 * 300.00014 * 3 2 1 6 6 H 1.48493 * 109.47215 * 59.99970 * 3 2 1 7 7 C 1.37877 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99604 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00206 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40272 * 66.45835 * 9 7 2 11 11 O 1.42106 * 106.40162 * 293.54194 * 9 7 2 12 12 N 1.65598 * 107.21976 * 180.02562 * 9 7 2 13 13 C 1.47418 * 125.64880 * 89.97356 * 12 9 7 14 14 C 1.54910 * 104.83486 * 155.90839 * 13 12 9 15 15 C 1.55157 * 101.57932 * 37.01031 * 14 13 12 16 16 H 1.08995 * 110.72236 * 83.04071 * 15 14 13 17 17 C 1.50696 * 110.72148 * 206.13888 * 15 14 13 18 18 C 1.38247 * 119.98639 * 238.54804 * 17 15 14 19 19 C 1.38216 * 120.01497 * 179.97438 * 18 17 15 20 20 C 1.38357 * 119.98603 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38219 * 119.98927 * 359.42057 * 22 20 19 24 24 C 1.47028 * 125.64817 * 270.01911 * 12 9 7 25 25 H 0.96999 * 120.00205 * 359.97438 * 1 2 3 26 26 H 1.08997 * 110.36942 * 37.06814 * 13 12 9 27 27 H 1.09003 * 110.46056 * 274.79099 * 13 12 9 28 28 H 1.09000 * 111.00687 * 278.93744 * 14 13 12 29 29 H 1.09001 * 111.00867 * 155.08153 * 14 13 12 30 30 H 1.08003 * 119.99321 * 0.02562 * 18 17 15 31 31 H 1.08003 * 120.00776 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.00645 * 179.69150 * 22 20 19 33 33 H 1.07997 * 119.99421 * 180.29781 * 23 22 20 34 34 H 1.09001 * 109.88119 * 61.60206 * 24 12 9 35 35 H 1.08997 * 109.87717 * 300.43907 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4519 -2.7956 1.2495 12 7 2.2484 -3.9354 -0.0005 13 6 2.8323 -4.5656 1.1974 14 6 3.2951 -5.9659 0.7232 15 6 3.8058 -5.6567 -0.7089 16 1 4.8283 -5.2801 -0.6807 17 6 3.7143 -6.8805 -1.5834 18 6 4.8516 -7.3865 -2.1850 19 6 4.7684 -8.5092 -2.9868 20 6 3.5466 -9.1265 -3.1877 21 17 3.4415 -10.5371 -4.1941 22 6 2.4079 -8.6160 -2.5905 23 6 2.4932 -7.4968 -1.7839 24 6 2.8307 -4.5640 -1.1953 25 1 -0.4850 0.8400 0.0004 26 1 2.0807 -4.6597 1.9811 27 1 3.6831 -3.9864 1.5563 28 1 2.4596 -6.6655 0.6975 29 1 4.1007 -6.3449 1.3520 30 1 5.8054 -6.9048 -2.0278 31 1 5.6569 -8.9041 -3.4570 32 1 1.4530 -9.0945 -2.7509 33 1 1.6051 -7.1010 -1.3139 34 1 3.3703 -3.8193 -1.7803 35 1 2.0423 -5.0129 -1.7994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963916.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:06 Heat of formation + Delta-G solvation = -77.306508 kcal Electronic energy + Delta-G solvation = -21549.062584 eV Core-core repulsion = 18084.755913 eV Total energy + Delta-G solvation = -3464.306671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.93602 -37.78442 -36.50599 -35.25516 -33.97996 -33.11338 -32.26887 -31.23728 -29.40837 -27.86123 -26.13356 -23.35389 -22.75110 -21.77576 -20.11499 -18.75405 -17.66260 -17.18123 -16.36317 -16.11817 -15.29097 -15.10004 -14.88116 -14.18414 -13.95217 -13.71727 -13.66750 -13.48610 -13.16533 -12.74289 -12.46221 -12.19710 -12.00221 -11.84475 -11.69179 -11.24823 -11.22626 -11.04349 -10.99281 -10.90196 -10.60004 -10.58697 -10.36392 -10.30176 -10.17958 -9.27376 -9.19821 -8.93716 -8.67212 -8.16414 -6.71298 -5.33461 0.96769 1.13807 1.95856 2.21041 3.04212 3.12433 3.19574 3.44336 4.04188 4.43091 4.53919 4.61387 4.71658 4.72670 4.85669 5.02915 5.17870 5.21338 5.29757 5.55036 5.58338 5.64589 5.78069 5.83044 5.91464 6.03325 6.05823 6.08931 6.12795 6.23879 6.28849 6.35693 6.51776 6.64646 6.85631 7.31691 7.44497 7.96874 8.87610 10.22290 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.027774 B = 0.003072 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.880544 B = 9110.964234 C = 9140.180708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.727 3.273 10 O -1.001 7.001 11 O -1.001 7.001 12 N -1.022 6.022 13 C 0.119 3.881 14 C -0.121 4.121 15 C -0.064 4.064 16 H 0.094 0.906 17 C -0.060 4.060 18 C -0.104 4.104 19 C -0.110 4.110 20 C -0.041 4.041 21 Cl -0.079 7.079 22 C -0.107 4.107 23 C -0.100 4.100 24 C 0.133 3.867 25 H 0.291 0.709 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.065 0.935 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.586 -15.731 -3.249 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.153 5.153 8 H 0.121 0.879 9 S 2.829 3.171 10 O -0.991 6.991 11 O -0.991 6.991 12 N -0.858 5.858 13 C -0.007 4.007 14 C -0.160 4.160 15 C -0.084 4.084 16 H 0.112 0.888 17 C -0.060 4.060 18 C -0.122 4.122 19 C -0.129 4.129 20 C -0.068 4.068 21 Cl -0.050 7.050 22 C -0.126 4.126 23 C -0.118 4.118 24 C 0.006 3.994 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.084 0.916 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.382 -15.850 -3.341 18.720 hybrid contribution 0.995 1.130 -0.183 1.517 sum 10.378 -14.721 -3.525 18.353 Atomic orbital electron populations 1.69900 1.06784 1.30676 1.40249 1.24765 0.94476 1.00843 0.88488 0.86129 0.80442 0.80377 0.78593 1.18616 1.19572 1.19572 1.30647 1.06199 1.11820 1.66662 0.87949 1.00164 0.71611 0.72567 0.72762 1.93359 1.72479 1.87491 1.45783 1.93356 1.72482 1.87508 1.45798 1.59200 1.61662 1.54311 1.10582 1.21848 0.98235 0.91904 0.88673 1.22909 1.01013 0.97541 0.94502 1.21312 1.00712 0.92137 0.94240 0.88799 1.19900 0.93195 0.96101 0.96826 1.21040 0.98593 0.95714 0.96838 1.21006 0.96297 0.96151 0.99457 1.20924 0.95587 0.91717 0.98554 1.98362 1.98612 1.39961 1.68095 1.21061 0.97544 0.96736 0.97226 1.21121 0.98229 0.94700 0.97743 1.21600 0.95458 0.94155 0.88152 0.89904 0.90179 0.92032 0.90557 0.90221 0.84975 0.85110 0.84933 0.84580 0.91635 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.89 13.19 55.43 0.73 -24.16 16 2 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 3 Si 0.92 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -1.02 -28.07 9.75 30.60 0.30 -27.77 16 8 H 0.10 2.59 7.81 -52.49 -0.41 2.18 16 9 S 2.73 72.26 5.22 -107.50 -0.56 71.70 16 10 O -1.00 -29.16 17.60 -57.17 -1.01 -30.17 16 11 O -1.00 -29.02 17.34 -57.17 -0.99 -30.01 16 12 N -1.02 -20.25 3.70 -111.42 -0.41 -20.66 16 13 C 0.12 1.89 7.10 -2.53 -0.02 1.88 16 14 C -0.12 -1.44 6.48 -24.58 -0.16 -1.60 16 15 C -0.06 -0.78 3.17 -89.94 -0.29 -1.06 16 16 H 0.09 0.97 7.95 -51.93 -0.41 0.56 16 17 C -0.06 -0.67 4.94 -104.62 -0.52 -1.18 16 18 C -0.10 -1.00 9.68 -39.59 -0.38 -1.38 16 19 C -0.11 -1.05 9.83 -39.55 -0.39 -1.44 16 20 C -0.04 -0.43 6.32 -39.50 -0.25 -0.68 16 21 Cl -0.08 -0.77 28.96 -51.86 -1.50 -2.27 16 22 C -0.11 -1.14 9.83 -39.55 -0.39 -1.53 16 23 C -0.10 -1.14 8.10 -39.59 -0.32 -1.46 16 24 C 0.13 2.18 6.47 -3.06 -0.02 2.16 16 25 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.08 1.32 7.78 -51.93 -0.40 0.91 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.89 7.09 -51.93 -0.37 0.52 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.13 0.99 7.98 -52.48 -0.42 0.57 16 31 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.14 1.58 7.30 -52.49 -0.38 1.20 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.11 6.76 -51.93 -0.35 0.76 16 LS Contribution 325.51 15.07 4.91 4.91 Total: -1.00 -34.48 325.51 -10.38 -44.87 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.00 Total: 0.79 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -2.53 Total: -30.48 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.32 Total: -44.82 kcal Atomic # 8 Polarization: -58.18 SS G_CDS: -2.00 Total: -60.18 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 72.26 SS G_CDS: -0.56 Total: 71.70 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.48 -10.38 -44.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963916.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.441 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds