Wall clock time and date at job start Tue Mar 31 2020 10:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99700 * 2 1 4 4 H 1.48500 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46948 * 300.00014 * 3 2 1 6 6 H 1.48493 * 109.47215 * 59.99970 * 3 2 1 7 7 C 1.37877 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99604 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00206 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40272 * 66.45835 * 9 7 2 11 11 O 1.42106 * 106.40162 * 293.54194 * 9 7 2 12 12 N 1.65598 * 107.21976 * 180.02562 * 9 7 2 13 13 C 1.47418 * 125.64880 * 89.97356 * 12 9 7 14 14 C 1.54910 * 104.83486 * 155.90839 * 13 12 9 15 15 C 1.55157 * 101.57932 * 37.01031 * 14 13 12 16 16 H 1.08995 * 110.72236 * 83.04071 * 15 14 13 17 17 C 1.50696 * 110.72148 * 206.13888 * 15 14 13 18 18 C 1.38247 * 119.98639 * 238.54804 * 17 15 14 19 19 C 1.38216 * 120.01497 * 179.97438 * 18 17 15 20 20 C 1.38357 * 119.98603 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38219 * 119.98927 * 359.42057 * 22 20 19 24 24 C 1.47028 * 125.64817 * 270.01911 * 12 9 7 25 25 H 0.96999 * 120.00205 * 359.97438 * 1 2 3 26 26 H 1.08997 * 110.36942 * 37.06814 * 13 12 9 27 27 H 1.09003 * 110.46056 * 274.79099 * 13 12 9 28 28 H 1.09000 * 111.00687 * 278.93744 * 14 13 12 29 29 H 1.09001 * 111.00867 * 155.08153 * 14 13 12 30 30 H 1.08003 * 119.99321 * 0.02562 * 18 17 15 31 31 H 1.08003 * 120.00776 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.00645 * 179.69150 * 22 20 19 33 33 H 1.07997 * 119.99421 * 180.29781 * 23 22 20 34 34 H 1.09001 * 109.88119 * 61.60206 * 24 12 9 35 35 H 1.08997 * 109.87717 * 300.43907 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4519 -2.7956 1.2495 12 7 2.2484 -3.9354 -0.0005 13 6 2.8323 -4.5656 1.1974 14 6 3.2951 -5.9659 0.7232 15 6 3.8058 -5.6567 -0.7089 16 1 4.8283 -5.2801 -0.6807 17 6 3.7143 -6.8805 -1.5834 18 6 4.8516 -7.3865 -2.1850 19 6 4.7684 -8.5092 -2.9868 20 6 3.5466 -9.1265 -3.1877 21 17 3.4415 -10.5371 -4.1941 22 6 2.4079 -8.6160 -2.5905 23 6 2.4932 -7.4968 -1.7839 24 6 2.8307 -4.5640 -1.1953 25 1 -0.4850 0.8400 0.0004 26 1 2.0807 -4.6597 1.9811 27 1 3.6831 -3.9864 1.5563 28 1 2.4596 -6.6655 0.6975 29 1 4.1007 -6.3449 1.3520 30 1 5.8054 -6.9048 -2.0278 31 1 5.6569 -8.9041 -3.4570 32 1 1.4530 -9.0945 -2.7509 33 1 1.6051 -7.1010 -1.3139 34 1 3.3703 -3.8193 -1.7803 35 1 2.0423 -5.0129 -1.7994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963916.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:06 Heat of formation + Delta-G solvation = -100.923899 kcal Electronic energy + Delta-G solvation = -21550.086711 eV Core-core repulsion = 18084.755913 eV Total energy + Delta-G solvation = -3465.330798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83181 -38.87078 -37.45179 -37.32527 -36.17628 -35.20681 -33.35283 -32.00925 -30.58587 -28.95698 -28.27340 -24.29815 -23.68923 -22.96308 -21.10740 -20.73609 -19.27655 -18.38010 -18.09539 -17.28738 -16.95815 -16.23766 -16.15499 -15.90709 -15.56758 -14.73488 -14.62705 -14.46143 -14.42619 -14.08458 -13.94632 -13.71461 -13.26149 -13.14980 -13.04407 -12.83743 -12.58315 -12.50951 -12.49312 -12.29290 -12.16115 -11.94040 -11.85401 -11.81015 -11.48518 -11.28480 -10.99322 -9.98146 -9.77316 -9.46468 -8.76344 -7.51205 0.12873 0.27576 0.36641 1.18199 1.32233 1.32843 1.51046 2.19373 2.55130 2.63429 2.87772 3.57590 3.68278 3.73011 3.83645 3.95039 3.99374 4.31939 4.36352 4.40899 4.45132 4.46642 4.63994 4.71496 4.78226 4.93005 4.98828 5.06094 5.07203 5.17044 5.26402 5.29721 5.30590 5.41260 5.65097 5.82573 5.87422 5.89504 6.75739 8.18928 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.027774 B = 0.003072 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.880544 B = 9110.964234 C = 9140.180708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.993 3.007 4 H -0.245 1.245 5 H -0.259 1.259 6 H -0.258 1.258 7 C -1.040 5.040 8 H 0.120 0.880 9 S 2.731 3.269 10 O -1.041 7.041 11 O -1.039 7.039 12 N -1.024 6.024 13 C 0.105 3.895 14 C -0.109 4.109 15 C -0.048 4.048 16 H 0.123 0.877 17 C -0.069 4.069 18 C -0.095 4.095 19 C -0.110 4.110 20 C -0.049 4.049 21 Cl -0.076 7.076 22 C -0.117 4.117 23 C -0.114 4.114 24 C 0.120 3.880 25 H 0.299 0.701 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.161 0.839 31 H 0.153 0.847 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.065 0.935 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.957 -16.069 -3.360 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.810 3.190 4 H -0.168 1.168 5 H -0.183 1.183 6 H -0.182 1.182 7 C -1.174 5.174 8 H 0.138 0.862 9 S 2.835 3.165 10 O -1.032 7.032 11 O -1.030 7.030 12 N -0.863 5.863 13 C -0.019 4.019 14 C -0.148 4.148 15 C -0.068 4.068 16 H 0.141 0.859 17 C -0.070 4.070 18 C -0.113 4.113 19 C -0.128 4.128 20 C -0.076 4.076 21 Cl -0.047 7.047 22 C -0.135 4.135 23 C -0.132 4.132 24 C -0.005 4.005 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.136 0.864 30 H 0.179 0.821 31 H 0.171 0.829 32 H 0.156 0.844 33 H 0.142 0.858 34 H 0.083 0.917 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.740 -16.213 -3.450 20.906 hybrid contribution -0.051 1.105 -0.180 1.121 sum 12.688 -15.108 -3.630 20.060 Atomic orbital electron populations 1.69996 1.08849 1.32353 1.41553 1.26079 0.95410 1.05521 0.87490 0.85072 0.79560 0.74904 0.79438 1.16820 1.18343 1.18238 1.31009 1.07197 1.12611 1.66558 0.86234 0.99550 0.72253 0.73372 0.71354 1.93294 1.74436 1.88335 1.47087 1.93293 1.74357 1.88331 1.46973 1.58605 1.61051 1.53161 1.13462 1.22226 0.98236 0.94436 0.87033 1.22910 1.02157 0.94781 0.94909 1.21246 1.00640 0.90901 0.93978 0.85921 1.19855 0.93637 0.95947 0.97535 1.21315 0.99083 0.95331 0.95576 1.21305 0.96608 0.95876 0.99046 1.21094 0.95963 0.91947 0.98546 1.98364 1.98634 1.39759 1.67950 1.21152 0.98225 0.96763 0.97394 1.21129 0.98346 0.95332 0.98434 1.21902 0.96146 0.95479 0.86988 0.89061 0.91654 0.90236 0.90755 0.86370 0.82100 0.82931 0.84434 0.85829 0.91654 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.05 13.19 21.45 0.28 -53.76 16 2 C 0.07 3.79 5.46 84.65 0.46 4.25 16 3 Si 0.99 41.25 29.54 68.60 2.03 43.28 16 4 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 5 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 7 C -1.04 -57.81 9.75 67.73 0.66 -57.15 16 8 H 0.12 5.98 7.81 -2.91 -0.02 5.96 16 9 S 2.73 149.88 5.22 -56.49 -0.29 149.58 16 10 O -1.04 -63.55 17.60 -128.00 -2.25 -65.81 16 11 O -1.04 -62.92 17.34 -128.00 -2.22 -65.14 16 12 N -1.02 -40.97 3.70 -506.43 -1.87 -42.84 16 13 C 0.11 3.25 7.10 86.86 0.62 3.87 16 14 C -0.11 -2.32 6.48 31.99 0.21 -2.12 16 15 C -0.05 -1.03 3.17 -10.35 -0.03 -1.07 16 16 H 0.12 1.98 7.95 -2.39 -0.02 1.96 16 17 C -0.07 -1.38 4.94 -19.86 -0.10 -1.48 16 18 C -0.10 -1.48 9.68 22.27 0.22 -1.27 16 19 C -0.11 -1.76 9.83 22.29 0.22 -1.54 16 20 C -0.05 -0.94 6.32 22.32 0.14 -0.79 16 21 Cl -0.08 -1.37 28.96 -2.72 -0.08 -1.45 16 22 C -0.12 -2.41 9.83 22.29 0.22 -2.19 16 23 C -0.11 -2.55 8.10 22.27 0.18 -2.37 16 24 C 0.12 3.91 6.47 86.73 0.56 4.47 16 25 H 0.30 16.11 8.31 -92.71 -0.77 15.34 16 26 H 0.06 2.18 7.78 -2.39 -0.02 2.16 16 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.07 1.63 7.09 -2.39 -0.02 1.61 16 29 H 0.12 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.16 1.58 7.98 -2.91 -0.02 1.55 16 31 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 33 H 0.12 2.99 7.30 -2.91 -0.02 2.97 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 1.86 6.76 -2.39 -0.02 1.84 16 Total: -1.00 -77.64 325.51 0.05 -77.59 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 1.11 Total: 15.94 kcal Atomic # 6 Polarization: -60.74 SS G_CDS: 3.35 Total: -57.39 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -1.59 Total: -96.61 kcal Atomic # 8 Polarization: -126.48 SS G_CDS: -4.47 Total: -130.95 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 149.88 SS G_CDS: -0.29 Total: 149.58 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -77.64 0.05 -77.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963916.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.333 kcal (2) G-P(sol) polarization free energy of solvation -77.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds