Wall clock time and date at job start Tue Mar 31 2020 10:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99870 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40184 * 293.54149 * 9 7 2 11 11 O 1.42096 * 106.40178 * 66.46061 * 9 7 2 12 12 N 1.65602 * 107.21768 * 180.02562 * 9 7 2 13 13 C 1.47026 * 125.64679 * 90.01900 * 12 9 7 14 14 C 1.54325 * 107.26824 * 181.02397 * 13 12 9 15 15 C 1.55153 * 102.94389 * 22.19692 * 14 13 12 16 16 H 1.08998 * 111.00367 * 82.57026 * 15 14 13 17 17 C 1.50694 * 111.00836 * 206.38348 * 15 14 13 18 18 C 1.38264 * 119.99117 * 58.26784 * 17 15 14 19 19 C 1.38222 * 120.02488 * 179.76744 * 18 17 15 20 20 C 1.38237 * 120.01496 * 0.51313 * 19 18 17 21 21 C 1.38327 * 119.98431 * 359.74232 * 20 19 18 22 22 Cl 1.73605 * 120.01336 * 180.02562 * 21 20 19 23 23 C 1.38189 * 119.99716 * 238.54548 * 17 15 14 24 24 C 1.47419 * 125.64962 * 269.71995 * 12 9 7 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.88582 * 300.44271 * 13 12 9 27 27 H 1.09003 * 109.87693 * 61.61438 * 13 12 9 28 28 H 1.08996 * 110.71601 * 140.56210 * 14 13 12 29 29 H 1.08996 * 110.72032 * 263.83288 * 14 13 12 30 30 H 1.08004 * 119.98906 * 0.02562 * 18 17 15 31 31 H 1.07998 * 119.99283 * 180.25843 * 19 18 17 32 32 H 1.08000 * 120.00953 * 179.76663 * 20 19 18 33 33 H 1.07999 * 120.00565 * 359.96317 * 23 17 15 34 34 H 1.09000 * 110.36456 * 274.74948 * 24 12 9 35 35 H 1.08997 * 110.36731 * 37.06333 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4518 -2.7956 1.2495 11 8 0.4509 -2.7950 -1.2500 12 7 2.2483 -3.9355 -0.0005 13 6 2.8299 -4.5647 1.1942 14 6 3.8439 -5.6214 0.7078 15 6 4.1918 -5.1360 -0.7242 16 1 4.9539 -4.3572 -0.6983 17 6 4.6290 -6.2868 -1.5934 18 6 3.7825 -7.3614 -1.7947 19 6 4.1809 -8.4150 -2.5957 20 6 5.4301 -8.3999 -3.1875 21 6 6.2794 -7.3276 -2.9822 22 17 7.8482 -7.3075 -3.7256 23 6 5.8780 -6.2705 -2.1845 24 6 2.8275 -4.5701 -1.1984 25 1 -0.4850 0.8401 0.0004 26 1 3.3385 -3.8135 1.7985 27 1 2.0456 -5.0452 1.7791 28 1 4.7315 -5.6240 1.3404 29 1 3.3865 -6.6104 0.6793 30 1 2.8081 -7.3756 -1.3292 31 1 3.5177 -9.2522 -2.7559 32 1 5.7428 -9.2250 -3.8103 33 1 6.5405 -5.4329 -2.0241 34 1 2.1823 -5.3747 -1.5510 35 1 2.9769 -3.8304 -1.9849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963953.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:05 Heat of formation + Delta-G solvation = -77.112634 kcal Electronic energy + Delta-G solvation = -21563.801221 eV Core-core repulsion = 18099.502957 eV Total energy + Delta-G solvation = -3464.298264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.93146 -37.77615 -36.53606 -35.25177 -33.97741 -33.11674 -32.45898 -30.93780 -29.45963 -27.98316 -26.13160 -23.36521 -22.77703 -21.71199 -20.17034 -18.74436 -17.68097 -17.04176 -16.38916 -15.99736 -15.51047 -15.13861 -14.90696 -14.16364 -13.97570 -13.81793 -13.74204 -13.31422 -13.08127 -12.80403 -12.61881 -12.02893 -11.98917 -11.77626 -11.68265 -11.29471 -11.24955 -11.20897 -11.04885 -10.82639 -10.63335 -10.54239 -10.35935 -10.30021 -10.20797 -9.24905 -9.07068 -8.94429 -8.77774 -8.18572 -6.70658 -5.33281 0.98152 1.08641 1.93498 2.20978 3.07817 3.12159 3.17653 3.42752 4.04434 4.36523 4.59275 4.61980 4.68777 4.81845 4.94670 4.99866 5.07906 5.18620 5.23514 5.46217 5.60719 5.68336 5.73225 5.81980 5.88934 6.01339 6.04625 6.11297 6.16142 6.21076 6.30478 6.33816 6.50522 6.62517 6.85175 7.32130 7.44159 7.96267 8.87700 10.22977 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.020199 B = 0.003465 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.851177 B = 8079.065975 C = 8818.145942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.264 1.264 7 C -1.021 5.021 8 H 0.102 0.898 9 S 2.727 3.273 10 O -1.001 7.001 11 O -1.000 7.000 12 N -1.022 6.022 13 C 0.123 3.877 14 C -0.119 4.119 15 C -0.067 4.067 16 H 0.096 0.904 17 C -0.050 4.050 18 C -0.109 4.109 19 C -0.105 4.105 20 C -0.119 4.119 21 C -0.033 4.033 22 Cl -0.077 7.077 23 C -0.106 4.106 24 C 0.136 3.864 25 H 0.292 0.708 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.062 0.938 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.679 -14.783 -3.500 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.201 1.201 5 H -0.188 1.188 6 H -0.188 1.188 7 C -1.154 5.154 8 H 0.120 0.880 9 S 2.829 3.171 10 O -0.991 6.991 11 O -0.991 6.991 12 N -0.857 5.857 13 C -0.003 4.003 14 C -0.157 4.157 15 C -0.087 4.087 16 H 0.115 0.885 17 C -0.051 4.051 18 C -0.127 4.127 19 C -0.123 4.123 20 C -0.137 4.137 21 C -0.059 4.059 22 Cl -0.048 7.048 23 C -0.125 4.125 24 C 0.009 3.991 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.080 0.920 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.612 -14.774 -3.553 19.124 hybrid contribution 1.182 1.245 -0.124 1.721 sum 12.794 -13.529 -3.677 18.980 Atomic orbital electron populations 1.69887 1.06789 1.30880 1.40062 1.24758 0.94474 1.00799 0.88486 0.86198 0.79895 0.79660 0.79790 1.20076 1.18839 1.18843 1.30595 1.06134 1.11818 1.66891 0.88005 1.00168 0.71619 0.72542 0.72764 1.93358 1.72493 1.87495 1.45769 1.93362 1.72427 1.87506 1.45805 1.59223 1.61956 1.53958 1.10576 1.21536 0.95595 0.94991 0.88153 1.22747 0.99152 0.98954 0.94875 1.21503 0.98400 0.94866 0.93945 0.88523 1.19696 0.93093 0.95515 0.96781 1.21232 1.00081 0.93193 0.98219 1.21106 0.95504 0.98833 0.96852 1.21021 0.93963 0.97661 1.01102 1.20895 0.87848 0.97397 0.99804 1.98368 1.26434 1.98550 1.81461 1.20989 0.96588 0.97876 0.97055 1.21882 0.91387 0.97309 0.88472 0.89791 0.91715 0.91698 0.90295 0.90681 0.84948 0.85073 0.85221 0.84829 0.91992 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.94 13.19 55.43 0.73 -24.21 16 2 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 3 Si 0.92 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 7 C -1.02 -28.10 9.75 30.60 0.30 -27.80 16 8 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16 9 S 2.73 72.54 5.22 -107.50 -0.56 71.98 16 10 O -1.00 -29.22 17.60 -57.17 -1.01 -30.22 16 11 O -1.00 -29.23 17.60 -57.17 -1.01 -30.23 16 12 N -1.02 -20.35 3.70 -111.29 -0.41 -20.76 16 13 C 0.12 1.99 6.99 -3.06 -0.02 1.96 16 14 C -0.12 -1.40 6.36 -24.90 -0.16 -1.56 16 15 C -0.07 -0.85 3.27 -89.51 -0.29 -1.14 16 16 H 0.10 1.16 7.96 -51.93 -0.41 0.75 16 17 C -0.05 -0.56 5.00 -104.63 -0.52 -1.08 16 18 C -0.11 -1.12 8.29 -39.58 -0.33 -1.45 16 19 C -0.10 -0.94 10.05 -39.59 -0.40 -1.34 16 20 C -0.12 -1.10 9.83 -39.55 -0.39 -1.49 16 21 C -0.03 -0.34 6.32 -39.50 -0.25 -0.59 16 22 Cl -0.08 -0.76 28.96 -51.86 -1.50 -2.26 16 23 C -0.11 -1.14 9.47 -39.55 -0.37 -1.52 16 24 C 0.14 2.23 6.39 -2.41 -0.02 2.21 16 25 H 0.29 7.72 8.31 -40.82 -0.34 7.38 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.79 7.08 -51.93 -0.37 0.42 16 30 H 0.13 1.28 7.00 -52.48 -0.37 0.91 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.13 1.30 7.98 -52.49 -0.42 0.88 16 34 H 0.06 0.95 6.75 -51.93 -0.35 0.60 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 325.88 15.07 4.91 4.91 Total: -1.00 -34.53 325.88 -10.41 -44.94 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -4.00 Total: 0.51 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: -2.55 Total: -30.18 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.32 Total: -44.97 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -2.01 Total: -60.46 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 72.54 SS G_CDS: -0.56 Total: 71.98 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.53 -10.41 -44.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963953.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.168 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds