Wall clock time and date at job start Tue Mar 31 2020 10:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99870 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40184 * 293.54149 * 9 7 2 11 11 O 1.42096 * 106.40178 * 66.46061 * 9 7 2 12 12 N 1.65602 * 107.21768 * 180.02562 * 9 7 2 13 13 C 1.47026 * 125.64679 * 90.01900 * 12 9 7 14 14 C 1.54325 * 107.26824 * 181.02397 * 13 12 9 15 15 C 1.55153 * 102.94389 * 22.19692 * 14 13 12 16 16 H 1.08998 * 111.00367 * 82.57026 * 15 14 13 17 17 C 1.50694 * 111.00836 * 206.38348 * 15 14 13 18 18 C 1.38264 * 119.99117 * 58.26784 * 17 15 14 19 19 C 1.38222 * 120.02488 * 179.76744 * 18 17 15 20 20 C 1.38237 * 120.01496 * 0.51313 * 19 18 17 21 21 C 1.38327 * 119.98431 * 359.74232 * 20 19 18 22 22 Cl 1.73605 * 120.01336 * 180.02562 * 21 20 19 23 23 C 1.38189 * 119.99716 * 238.54548 * 17 15 14 24 24 C 1.47419 * 125.64962 * 269.71995 * 12 9 7 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.88582 * 300.44271 * 13 12 9 27 27 H 1.09003 * 109.87693 * 61.61438 * 13 12 9 28 28 H 1.08996 * 110.71601 * 140.56210 * 14 13 12 29 29 H 1.08996 * 110.72032 * 263.83288 * 14 13 12 30 30 H 1.08004 * 119.98906 * 0.02562 * 18 17 15 31 31 H 1.07998 * 119.99283 * 180.25843 * 19 18 17 32 32 H 1.08000 * 120.00953 * 179.76663 * 20 19 18 33 33 H 1.07999 * 120.00565 * 359.96317 * 23 17 15 34 34 H 1.09000 * 110.36456 * 274.74948 * 24 12 9 35 35 H 1.08997 * 110.36731 * 37.06333 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4518 -2.7956 1.2495 11 8 0.4509 -2.7950 -1.2500 12 7 2.2483 -3.9355 -0.0005 13 6 2.8299 -4.5647 1.1942 14 6 3.8439 -5.6214 0.7078 15 6 4.1918 -5.1360 -0.7242 16 1 4.9539 -4.3572 -0.6983 17 6 4.6290 -6.2868 -1.5934 18 6 3.7825 -7.3614 -1.7947 19 6 4.1809 -8.4150 -2.5957 20 6 5.4301 -8.3999 -3.1875 21 6 6.2794 -7.3276 -2.9822 22 17 7.8482 -7.3075 -3.7256 23 6 5.8780 -6.2705 -2.1845 24 6 2.8275 -4.5701 -1.1984 25 1 -0.4850 0.8401 0.0004 26 1 3.3385 -3.8135 1.7985 27 1 2.0456 -5.0452 1.7791 28 1 4.7315 -5.6240 1.3404 29 1 3.3865 -6.6104 0.6793 30 1 2.8081 -7.3756 -1.3292 31 1 3.5177 -9.2522 -2.7559 32 1 5.7428 -9.2250 -3.8103 33 1 6.5405 -5.4329 -2.0241 34 1 2.1823 -5.3747 -1.5510 35 1 2.9769 -3.8304 -1.9849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963953.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:05 Heat of formation + Delta-G solvation = -100.668394 kcal Electronic energy + Delta-G solvation = -21564.822675 eV Core-core repulsion = 18099.502957 eV Total energy + Delta-G solvation = -3465.319718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81226 -38.87153 -37.45384 -37.32485 -36.18066 -35.21039 -33.51209 -31.69868 -30.63443 -29.08629 -28.27582 -24.36466 -23.58204 -22.95478 -21.14930 -20.74268 -19.29386 -18.35807 -18.00189 -17.24985 -16.86270 -16.35725 -16.13895 -15.98266 -15.63952 -14.69349 -14.62813 -14.45846 -14.37392 -14.21378 -14.01517 -13.70319 -13.33355 -13.01536 -12.92287 -12.74219 -12.56927 -12.50049 -12.47413 -12.33690 -12.22150 -12.14578 -11.96607 -11.64763 -11.50801 -11.25574 -11.02615 -9.87293 -9.72946 -9.57027 -8.76434 -7.51498 0.19204 0.24067 0.35502 1.18547 1.32476 1.34790 1.47989 2.19103 2.55346 2.65431 2.86307 3.53302 3.68127 3.73984 3.82181 3.98148 4.18559 4.21164 4.34086 4.36564 4.39832 4.47294 4.59940 4.64988 4.80741 4.93007 4.96358 5.01227 5.09716 5.15512 5.25018 5.29851 5.39564 5.43586 5.63760 5.79919 5.88557 5.88862 6.75422 8.18628 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.020199 B = 0.003465 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.851177 B = 8079.065975 C = 8818.145942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.990 3.010 4 H -0.263 1.263 5 H -0.249 1.249 6 H -0.250 1.250 7 C -1.043 5.043 8 H 0.119 0.881 9 S 2.732 3.268 10 O -1.039 7.039 11 O -1.040 7.040 12 N -1.023 6.023 13 C 0.109 3.891 14 C -0.104 4.104 15 C -0.053 4.053 16 H 0.102 0.898 17 C -0.060 4.060 18 C -0.117 4.117 19 C -0.102 4.102 20 C -0.117 4.117 21 C -0.044 4.044 22 Cl -0.076 7.076 23 C -0.113 4.113 24 C 0.124 3.876 25 H 0.300 0.700 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.137 0.863 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.139 0.861 34 H 0.071 0.929 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.983 -15.596 -3.681 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.172 1.172 6 H -0.174 1.174 7 C -1.176 5.176 8 H 0.137 0.863 9 S 2.836 3.164 10 O -1.029 7.029 11 O -1.030 7.030 12 N -0.862 5.862 13 C -0.016 4.016 14 C -0.142 4.142 15 C -0.073 4.073 16 H 0.120 0.880 17 C -0.061 4.061 18 C -0.135 4.135 19 C -0.120 4.120 20 C -0.136 4.136 21 C -0.071 4.071 22 Cl -0.047 7.047 23 C -0.131 4.131 24 C -0.002 4.002 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.126 0.874 29 H 0.110 0.890 30 H 0.154 0.846 31 H 0.174 0.826 32 H 0.166 0.834 33 H 0.157 0.843 34 H 0.089 0.911 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.909 -15.609 -3.733 21.237 hybrid contribution 0.485 1.363 -0.103 1.450 sum 14.394 -14.246 -3.836 20.612 Atomic orbital electron populations 1.69984 1.08810 1.32481 1.41375 1.26050 0.95394 1.05409 0.87470 0.85161 0.78813 0.74414 0.80794 1.18663 1.17248 1.17403 1.30975 1.07184 1.12681 1.66797 0.86298 0.99532 0.72205 0.73300 0.71376 1.93294 1.74353 1.88310 1.46959 1.93298 1.74323 1.88326 1.47043 1.58621 1.61303 1.52887 1.13400 1.21892 0.96598 0.96110 0.86954 1.22744 0.98928 0.98031 0.94533 1.21359 0.95987 0.95551 0.94439 0.87966 1.19532 0.93675 0.95359 0.97489 1.21392 1.00167 0.93377 0.98569 1.21392 0.95695 0.99068 0.95840 1.21315 0.93785 0.97743 1.00742 1.21032 0.88209 0.97766 1.00045 1.98368 1.26366 1.98559 1.81407 1.21067 0.96611 0.98324 0.97123 1.22183 0.93893 0.97088 0.86999 0.89020 0.91662 0.91957 0.87417 0.88956 0.84555 0.82584 0.83372 0.84298 0.91107 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.00 13.19 21.45 0.28 -53.71 16 2 C 0.07 3.91 5.46 84.66 0.46 4.37 16 3 Si 0.99 41.40 29.54 68.60 2.03 43.42 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 6 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 7 C -1.04 -58.17 9.75 67.74 0.66 -57.51 16 8 H 0.12 5.96 7.81 -2.91 -0.02 5.94 16 9 S 2.73 150.01 5.22 -56.49 -0.29 149.71 16 10 O -1.04 -62.97 17.60 -128.00 -2.25 -65.22 16 11 O -1.04 -63.20 17.60 -128.00 -2.25 -65.45 16 12 N -1.02 -41.16 3.70 -506.02 -1.87 -43.03 16 13 C 0.11 3.45 6.99 86.73 0.61 4.05 16 14 C -0.10 -2.20 6.36 31.78 0.20 -2.00 16 15 C -0.05 -1.25 3.27 -10.07 -0.03 -1.28 16 16 H 0.10 2.27 7.96 -2.39 -0.02 2.25 16 17 C -0.06 -1.21 5.00 -19.87 -0.10 -1.31 16 18 C -0.12 -2.13 8.29 22.27 0.18 -1.95 16 19 C -0.10 -1.54 10.05 22.27 0.22 -1.31 16 20 C -0.12 -1.85 9.83 22.29 0.22 -1.63 16 21 C -0.04 -0.81 6.32 22.32 0.14 -0.67 16 22 Cl -0.08 -1.35 28.96 -2.72 -0.08 -1.43 16 23 C -0.11 -2.19 9.47 22.29 0.21 -1.98 16 24 C 0.12 4.03 6.39 86.93 0.56 4.59 16 25 H 0.30 16.21 8.31 -92.71 -0.77 15.44 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.09 1.67 7.08 -2.39 -0.02 1.65 16 30 H 0.14 2.34 7.00 -2.91 -0.02 2.32 16 31 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 33 H 0.14 2.46 7.98 -2.91 -0.02 2.44 16 34 H 0.07 2.15 6.75 -2.39 -0.02 2.13 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -76.82 325.88 0.00 -76.82 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 1.11 Total: 15.53 kcal Atomic # 6 Polarization: -59.97 SS G_CDS: 3.33 Total: -56.64 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -1.59 Total: -96.75 kcal Atomic # 8 Polarization: -126.17 SS G_CDS: -4.51 Total: -130.67 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 150.01 SS G_CDS: -0.29 Total: 149.71 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Total: -76.82 0.00 -76.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963953.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.844 kcal (2) G-P(sol) polarization free energy of solvation -76.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds