Wall clock time and date at job start Tue Mar 31 2020 10:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00259 * 2 1 4 4 H 1.48493 * 109.47399 * 270.00697 * 3 2 1 5 5 H 1.48503 * 109.46879 * 30.00751 * 3 2 1 6 6 H 1.48494 * 109.47047 * 150.00253 * 3 2 1 7 7 C 1.37878 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99985 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99827 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40103 * 66.45843 * 9 7 2 11 11 O 1.42095 * 106.39957 * 293.54153 * 9 7 2 12 12 N 1.65598 * 107.21856 * 179.97438 * 9 7 2 13 13 C 1.47427 * 125.65100 * 270.04477 * 12 9 7 14 14 C 1.54907 * 104.83144 * 155.83239 * 13 12 9 15 15 C 1.55158 * 101.58447 * 37.00902 * 14 13 12 16 16 C 1.47025 * 125.64727 * 89.99613 * 12 9 7 17 17 H 1.09000 * 109.88334 * 300.67112 * 16 12 9 18 18 C 1.50706 * 109.87780 * 61.67947 * 16 12 9 19 19 C 1.38264 * 119.99067 * 219.99567 * 18 16 12 20 20 C 1.38224 * 120.02445 * 180.02562 * 19 18 16 21 21 C 1.38237 * 120.01313 * 0.26351 * 20 19 18 22 22 C 1.38328 * 119.98312 * 359.46435 * 21 20 19 23 23 Cl 1.73603 * 120.01189 * 180.30168 * 22 21 20 24 24 C 1.38190 * 119.99238 * 39.98154 * 18 16 12 25 25 H 0.97006 * 119.99753 * 359.97438 * 1 2 3 26 26 H 1.08996 * 110.36342 * 274.67061 * 13 12 9 27 27 H 1.09003 * 110.36497 * 36.99191 * 13 12 9 28 28 H 1.09003 * 111.00456 * 155.07899 * 14 13 12 29 29 H 1.08997 * 111.00683 * 278.89723 * 14 13 12 30 30 H 1.08995 * 110.72187 * 206.13453 * 15 14 13 31 31 H 1.09005 * 110.72094 * 82.85906 * 15 14 13 32 32 H 1.07996 * 119.98741 * 0.02879 * 19 18 16 33 33 H 1.08002 * 119.99032 * 179.97438 * 20 19 18 34 34 H 1.07995 * 120.00242 * 179.74655 * 21 20 19 35 35 H 1.08000 * 120.00844 * 0.02562 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4508 -2.7949 -1.2500 11 8 0.4518 -2.7954 1.2494 12 7 2.2481 -3.9354 -0.0019 13 6 2.8315 -4.5650 -1.2006 14 6 4.1925 -5.1335 -0.7274 15 6 3.8459 -5.6203 0.7045 16 6 2.8310 -4.5648 1.1921 17 1 3.3368 -3.8130 1.7979 18 6 1.7477 -5.2307 2.0009 19 6 1.7705 -5.1551 3.3813 20 6 0.7775 -5.7660 4.1239 21 6 -0.2359 -6.4575 3.4870 22 6 -0.2623 -6.5286 2.1058 23 17 -1.5390 -7.3901 1.3049 24 6 0.7317 -5.9163 1.3628 25 1 -0.4850 0.8401 0.0004 26 1 2.1881 -5.3689 -1.5580 27 1 2.9823 -3.8221 -1.9839 28 1 4.5086 -5.9654 -1.3569 29 1 4.9540 -4.3541 -0.7021 30 1 4.7338 -5.6223 1.3366 31 1 3.3894 -6.6097 0.6756 32 1 2.5644 -4.6186 3.8795 33 1 0.7961 -5.7070 5.2022 34 1 -1.0094 -6.9382 4.0675 35 1 0.7141 -5.9754 0.2846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192966732.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:00 Heat of formation + Delta-G solvation = -71.302362 kcal Electronic energy + Delta-G solvation = -22655.219852 eV Core-core repulsion = 19191.173540 eV Total energy + Delta-G solvation = -3464.046312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.59365 -37.56804 -36.14500 -35.19525 -33.91618 -33.08701 -31.57351 -30.54261 -30.23645 -27.61400 -26.12115 -22.96648 -22.34372 -21.29986 -20.52728 -18.70046 -17.67632 -16.65554 -16.31922 -15.74217 -15.18652 -14.96917 -14.77426 -14.08086 -13.89691 -13.47836 -13.41485 -13.21574 -12.96586 -12.80128 -12.19279 -11.99750 -11.88119 -11.33102 -11.26101 -11.21794 -11.20489 -10.95912 -10.91400 -10.61554 -10.58743 -10.47630 -10.32787 -10.24233 -10.13133 -9.25226 -8.93204 -8.63946 -8.41252 -8.15787 -6.69661 -5.32188 1.45374 1.55299 2.23886 2.36833 3.05523 3.12223 3.18296 3.87228 4.05636 4.60414 4.62430 4.74552 4.86857 5.05932 5.11593 5.22697 5.31769 5.51829 5.55648 5.70491 5.77780 5.84866 5.90467 5.92938 6.00680 6.08450 6.17759 6.24038 6.30835 6.43467 6.48931 6.57478 6.67581 6.96660 7.07553 7.32730 7.46904 7.97012 8.88583 10.23741 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015647 B = 0.005494 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.087388 B = 5094.988602 C = 5555.489583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.263 1.263 7 C -1.022 5.022 8 H 0.101 0.899 9 S 2.722 3.278 10 O -1.002 7.002 11 O -0.988 6.988 12 N -1.015 6.015 13 C 0.122 3.878 14 C -0.130 4.130 15 C -0.119 4.119 16 C 0.193 3.807 17 H 0.085 0.915 18 C -0.063 4.063 19 C -0.097 4.097 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.030 4.030 23 Cl -0.082 7.082 24 C -0.093 4.093 25 H 0.291 0.709 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.044 -12.178 4.520 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.187 1.187 7 C -1.155 5.155 8 H 0.119 0.881 9 S 2.824 3.176 10 O -0.992 6.992 11 O -0.978 6.978 12 N -0.849 5.849 13 C -0.004 4.004 14 C -0.169 4.169 15 C -0.158 4.158 16 C 0.085 3.915 17 H 0.102 0.898 18 C -0.065 4.065 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.136 4.136 22 C -0.057 4.057 23 Cl -0.053 7.053 24 C -0.112 4.112 25 H 0.101 0.899 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.736 -12.244 4.422 14.226 hybrid contribution 0.672 1.326 -0.102 1.490 sum 6.408 -10.918 4.320 13.377 Atomic orbital electron populations 1.69903 1.06766 1.30713 1.40095 1.24753 0.94459 1.00759 0.88544 0.86188 0.80191 0.80135 0.79205 1.19157 1.19921 1.18653 1.30642 1.06110 1.11941 1.66825 0.88087 1.00374 0.71726 0.72536 0.72994 1.93363 1.72308 1.87528 1.46034 1.93390 1.72020 1.87232 1.45162 1.59419 1.61995 1.53452 1.10017 1.21827 0.93049 0.97261 0.88239 1.22804 0.97542 1.00699 0.95884 1.22686 0.98087 0.98225 0.96785 1.20067 0.90780 0.93952 0.86657 0.89755 1.20163 0.96136 0.96183 0.94037 1.21015 0.98958 0.98516 0.93129 1.20976 0.94216 0.97530 0.99801 1.20923 0.99605 1.00905 0.92192 1.20821 0.91890 1.00075 0.92882 1.98343 1.50880 1.75716 1.80407 1.20806 0.93232 0.96892 1.00259 0.89890 0.92390 0.90567 0.90514 0.90558 0.90315 0.90676 0.85473 0.85367 0.85456 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.14 13.19 55.43 0.73 -24.41 16 2 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 3 Si 0.92 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 7 C -1.02 -28.33 9.75 30.60 0.30 -28.04 16 8 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16 9 S 2.72 72.91 5.17 -107.50 -0.56 72.36 16 10 O -1.00 -29.81 17.60 -57.17 -1.01 -30.82 16 11 O -0.99 -28.49 16.16 -57.17 -0.92 -29.42 16 12 N -1.01 -20.32 2.67 -105.63 -0.28 -20.60 16 13 C 0.12 1.99 6.98 -2.53 -0.02 1.97 16 14 C -0.13 -1.56 7.08 -24.58 -0.17 -1.73 16 15 C -0.12 -1.43 6.45 -24.90 -0.16 -1.59 16 16 C 0.19 3.18 3.26 -68.10 -0.22 2.96 16 17 H 0.08 1.35 8.01 -51.93 -0.42 0.93 16 18 C -0.06 -1.09 3.40 -104.63 -0.36 -1.44 16 19 C -0.10 -1.49 9.67 -39.58 -0.38 -1.87 16 20 C -0.11 -1.49 10.05 -39.59 -0.40 -1.89 16 21 C -0.12 -1.73 9.83 -39.55 -0.39 -2.12 16 22 C -0.03 -0.51 6.32 -39.50 -0.25 -0.76 16 23 Cl -0.08 -1.27 28.96 -51.86 -1.50 -2.77 16 24 C -0.09 -1.66 8.80 -39.55 -0.35 -2.01 16 25 H 0.29 7.77 8.31 -40.82 -0.34 7.43 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.85 7.77 -51.93 -0.40 0.45 16 32 H 0.13 1.61 8.04 -52.49 -0.42 1.19 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.13 2.32 7.73 -52.49 -0.41 1.91 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -35.30 326.16 -10.29 -45.59 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.15 Total: 2.40 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: -2.50 Total: -32.88 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.45 Total: -45.01 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: -1.93 Total: -60.24 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 72.91 SS G_CDS: -0.56 Total: 72.36 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.50 Total: -2.77 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.30 -10.29 -45.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192966732.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.713 kcal (2) G-P(sol) polarization free energy of solvation -35.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds