Wall clock time and date at job start Tue Mar 31 2020 10:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00259 * 2 1 4 4 H 1.48493 * 109.47399 * 270.00697 * 3 2 1 5 5 H 1.48503 * 109.46879 * 30.00751 * 3 2 1 6 6 H 1.48494 * 109.47047 * 150.00253 * 3 2 1 7 7 C 1.37878 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99985 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99827 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40103 * 66.45843 * 9 7 2 11 11 O 1.42095 * 106.39957 * 293.54153 * 9 7 2 12 12 N 1.65598 * 107.21856 * 179.97438 * 9 7 2 13 13 C 1.47427 * 125.65100 * 270.04477 * 12 9 7 14 14 C 1.54907 * 104.83144 * 155.83239 * 13 12 9 15 15 C 1.55158 * 101.58447 * 37.00902 * 14 13 12 16 16 C 1.47025 * 125.64727 * 89.99613 * 12 9 7 17 17 H 1.09000 * 109.88334 * 300.67112 * 16 12 9 18 18 C 1.50706 * 109.87780 * 61.67947 * 16 12 9 19 19 C 1.38264 * 119.99067 * 219.99567 * 18 16 12 20 20 C 1.38224 * 120.02445 * 180.02562 * 19 18 16 21 21 C 1.38237 * 120.01313 * 0.26351 * 20 19 18 22 22 C 1.38328 * 119.98312 * 359.46435 * 21 20 19 23 23 Cl 1.73603 * 120.01189 * 180.30168 * 22 21 20 24 24 C 1.38190 * 119.99238 * 39.98154 * 18 16 12 25 25 H 0.97006 * 119.99753 * 359.97438 * 1 2 3 26 26 H 1.08996 * 110.36342 * 274.67061 * 13 12 9 27 27 H 1.09003 * 110.36497 * 36.99191 * 13 12 9 28 28 H 1.09003 * 111.00456 * 155.07899 * 14 13 12 29 29 H 1.08997 * 111.00683 * 278.89723 * 14 13 12 30 30 H 1.08995 * 110.72187 * 206.13453 * 15 14 13 31 31 H 1.09005 * 110.72094 * 82.85906 * 15 14 13 32 32 H 1.07996 * 119.98741 * 0.02879 * 19 18 16 33 33 H 1.08002 * 119.99032 * 179.97438 * 20 19 18 34 34 H 1.07995 * 120.00242 * 179.74655 * 21 20 19 35 35 H 1.08000 * 120.00844 * 0.02562 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4508 -2.7949 -1.2500 11 8 0.4518 -2.7954 1.2494 12 7 2.2481 -3.9354 -0.0019 13 6 2.8315 -4.5650 -1.2006 14 6 4.1925 -5.1335 -0.7274 15 6 3.8459 -5.6203 0.7045 16 6 2.8310 -4.5648 1.1921 17 1 3.3368 -3.8130 1.7979 18 6 1.7477 -5.2307 2.0009 19 6 1.7705 -5.1551 3.3813 20 6 0.7775 -5.7660 4.1239 21 6 -0.2359 -6.4575 3.4870 22 6 -0.2623 -6.5286 2.1058 23 17 -1.5390 -7.3901 1.3049 24 6 0.7317 -5.9163 1.3628 25 1 -0.4850 0.8401 0.0004 26 1 2.1881 -5.3689 -1.5580 27 1 2.9823 -3.8221 -1.9839 28 1 4.5086 -5.9654 -1.3569 29 1 4.9540 -4.3541 -0.7021 30 1 4.7338 -5.6223 1.3366 31 1 3.3894 -6.6097 0.6756 32 1 2.5644 -4.6186 3.8795 33 1 0.7961 -5.7070 5.2022 34 1 -1.0094 -6.9382 4.0675 35 1 0.7141 -5.9754 0.2846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192966732.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:59 Heat of formation + Delta-G solvation = -95.478964 kcal Electronic energy + Delta-G solvation = -22656.268228 eV Core-core repulsion = 19191.173540 eV Total energy + Delta-G solvation = -3465.094688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80806 -38.79439 -37.44712 -37.29707 -36.09827 -35.20277 -32.77084 -31.77078 -31.50592 -28.81161 -28.27192 -24.20949 -23.56250 -22.51086 -21.76239 -20.67618 -19.28177 -18.31961 -17.93697 -17.20238 -16.83778 -16.43743 -16.01851 -15.90896 -15.64261 -14.78692 -14.68173 -14.52706 -14.31007 -14.09249 -13.96448 -13.38355 -13.32523 -13.06155 -13.02480 -12.56586 -12.47011 -12.41692 -12.36513 -12.31716 -12.15305 -12.07142 -11.96970 -11.69262 -11.50471 -11.27551 -10.97746 -9.98926 -9.71518 -9.51571 -8.76225 -7.51282 0.19289 0.28791 0.40465 1.13345 1.31140 1.31953 1.48172 2.18535 2.55248 2.65484 2.97654 3.55873 3.72057 3.82618 3.87046 3.93646 4.11677 4.25396 4.34568 4.39830 4.47170 4.57881 4.66534 4.75611 4.85782 4.99621 5.04050 5.07818 5.10955 5.18217 5.28885 5.32228 5.37890 5.45337 5.65282 5.84451 5.88963 5.94887 6.75359 8.18424 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015647 B = 0.005494 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.087388 B = 5094.988602 C = 5555.489583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.989 3.011 4 H -0.254 1.254 5 H -0.262 1.262 6 H -0.244 1.244 7 C -1.043 5.043 8 H 0.118 0.882 9 S 2.728 3.272 10 O -1.048 7.048 11 O -1.020 7.020 12 N -1.016 6.016 13 C 0.106 3.894 14 C -0.115 4.115 15 C -0.106 4.106 16 C 0.180 3.820 17 H 0.087 0.913 18 C -0.081 4.081 19 C -0.109 4.109 20 C -0.102 4.102 21 C -0.122 4.122 22 C -0.050 4.050 23 Cl -0.081 7.081 24 C -0.120 4.120 25 H 0.298 0.702 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.684 -12.305 5.925 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.186 1.186 6 H -0.167 1.167 7 C -1.176 5.176 8 H 0.136 0.864 9 S 2.831 3.169 10 O -1.039 7.039 11 O -1.011 7.011 12 N -0.854 5.854 13 C -0.019 4.019 14 C -0.154 4.154 15 C -0.145 4.145 16 C 0.074 3.926 17 H 0.105 0.895 18 C -0.083 4.083 19 C -0.127 4.127 20 C -0.120 4.120 21 C -0.140 4.140 22 C -0.076 4.076 23 Cl -0.053 7.053 24 C -0.139 4.139 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.100 0.900 32 H 0.170 0.830 33 H 0.184 0.816 34 H 0.170 0.830 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.371 -12.393 5.825 16.050 hybrid contribution -0.164 1.258 -0.523 1.373 sum 8.207 -11.135 5.302 14.814 Atomic orbital electron populations 1.70008 1.08870 1.32294 1.41553 1.26060 0.95363 1.05447 0.87511 0.85149 0.79296 0.74724 0.80147 1.17856 1.18609 1.16720 1.31029 1.07124 1.12844 1.66626 0.86401 0.99703 0.72319 0.73262 0.71581 1.93290 1.74428 1.88455 1.47707 1.93325 1.73767 1.88004 1.45975 1.58798 1.61354 1.52324 1.12890 1.22183 0.95778 0.96979 0.86964 1.22803 0.94654 1.01835 0.96098 1.22707 0.97892 0.96841 0.97045 1.20493 0.91567 0.95114 0.85430 0.89489 1.20371 0.96314 0.96463 0.95176 1.21428 1.00095 0.98609 0.92595 1.21465 0.92984 0.95856 1.01700 1.21311 1.00456 1.00750 0.91503 1.21074 0.91967 1.00621 0.93940 1.98332 1.50703 1.75632 1.80597 1.20826 0.94689 0.98663 0.99718 0.89169 0.92184 0.91748 0.87158 0.89590 0.86890 0.90040 0.83032 0.81577 0.82986 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.71 13.19 21.45 0.28 -54.43 16 2 C 0.07 3.89 5.46 84.65 0.46 4.35 16 3 Si 0.99 41.56 29.54 68.60 2.03 43.58 16 4 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 6 H -0.24 -9.44 7.11 99.48 0.71 -8.73 16 7 C -1.04 -58.53 9.75 67.73 0.66 -57.87 16 8 H 0.12 5.95 7.81 -2.91 -0.02 5.92 16 9 S 2.73 151.27 5.17 -56.49 -0.29 150.98 16 10 O -1.05 -65.65 17.60 -128.00 -2.25 -67.91 16 11 O -1.02 -61.08 16.16 -128.00 -2.07 -63.15 16 12 N -1.02 -41.18 2.67 -488.11 -1.30 -42.48 16 13 C 0.11 3.44 6.98 86.85 0.61 4.04 16 14 C -0.12 -2.42 7.08 31.99 0.23 -2.20 16 15 C -0.11 -2.25 6.45 31.78 0.21 -2.04 16 16 C 0.18 5.76 3.26 44.60 0.15 5.91 16 17 H 0.09 2.68 8.01 -2.39 -0.02 2.66 16 18 C -0.08 -2.76 3.40 -19.87 -0.07 -2.83 16 19 C -0.11 -3.13 9.67 22.27 0.22 -2.92 16 20 C -0.10 -2.61 10.05 22.27 0.22 -2.39 16 21 C -0.12 -3.42 9.83 22.29 0.22 -3.20 16 22 C -0.05 -1.67 6.32 22.32 0.14 -1.53 16 23 Cl -0.08 -2.56 28.96 -2.72 -0.08 -2.64 16 24 C -0.12 -4.39 8.80 22.29 0.20 -4.19 16 25 H 0.30 16.36 8.31 -92.70 -0.77 15.59 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 1.65 7.77 -2.38 -0.02 1.63 16 32 H 0.15 3.47 8.04 -2.91 -0.02 3.44 16 33 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 35 H 0.11 4.27 7.73 -2.91 -0.02 4.24 16 Total: -1.00 -80.64 326.16 0.65 -79.99 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 1.10 Total: 20.91 kcal Atomic # 6 Polarization: -68.10 SS G_CDS: 3.23 Total: -64.87 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -1.02 Total: -96.91 kcal Atomic # 8 Polarization: -126.73 SS G_CDS: -4.32 Total: -131.06 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 151.27 SS G_CDS: -0.29 Total: 150.98 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.08 Total: -2.64 kcal Total: -80.64 0.65 -79.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192966732.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.488 kcal (2) G-P(sol) polarization free energy of solvation -80.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds