Wall clock time and date at job start Tue Mar 31 2020 10:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00500 * 2 1 4 4 H 1.48496 * 109.47065 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.46847 * 29.99701 * 3 2 1 6 6 H 1.48499 * 109.47533 * 149.99507 * 3 2 1 7 7 C 1.37881 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00155 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99949 * 359.97438 * 7 2 1 10 10 O 1.42096 * 106.40217 * 66.46163 * 9 7 2 11 11 O 1.42100 * 106.40509 * 293.54432 * 9 7 2 12 12 N 1.65602 * 107.21711 * 180.02562 * 9 7 2 13 13 C 1.47427 * 125.64616 * 90.03161 * 12 9 7 14 14 C 1.54914 * 104.82986 * 204.08910 * 13 12 9 15 15 C 1.55153 * 101.58113 * 322.98765 * 14 13 12 16 16 C 1.47317 * 125.61871 * 269.80056 * 12 9 7 17 17 H 1.09000 * 109.84974 * 59.58376 * 16 12 9 18 18 C 1.50703 * 110.06339 * 298.32157 * 16 12 9 19 19 C 1.38259 * 119.99028 * 140.80879 * 18 16 12 20 20 C 1.38225 * 120.02485 * 179.97438 * 19 18 16 21 21 C 1.38233 * 120.01420 * 0.02562 * 20 19 18 22 22 C 1.38334 * 119.98711 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 120.01607 * 180.02562 * 22 21 20 24 24 C 1.38195 * 119.99300 * 320.53962 * 18 16 12 25 25 H 0.96997 * 119.99592 * 0.02562 * 1 2 3 26 26 H 1.08996 * 110.37285 * 85.24667 * 13 12 9 27 27 H 1.09000 * 110.45726 * 322.97178 * 13 12 9 28 28 H 1.09001 * 111.00193 * 204.90992 * 14 13 12 29 29 H 1.08997 * 111.03549 * 81.07618 * 14 13 12 30 30 H 1.09002 * 110.72030 * 153.86743 * 15 14 13 31 31 H 1.09003 * 110.72184 * 276.96394 * 15 14 13 32 32 H 1.08001 * 119.99283 * 359.97438 * 19 18 16 33 33 H 1.07997 * 119.99269 * 180.02562 * 20 19 18 34 34 H 1.07999 * 120.00744 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.00449 * 0.02562 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 16 1.1235 -2.7200 0.0019 10 8 0.4509 -2.7961 -1.2475 11 8 0.4517 -2.7944 1.2519 12 7 2.2482 -3.9355 0.0030 13 6 2.8312 -4.5654 1.2016 14 6 4.1915 -5.1356 0.7279 15 6 3.8438 -5.6221 -0.7037 16 6 2.8278 -4.5691 -1.1940 17 1 3.3350 -3.8191 -1.8009 18 6 1.7449 -5.2384 -2.0004 19 6 1.7753 -5.1797 -3.3815 20 6 0.7827 -5.7938 -4.1219 21 6 -0.2414 -6.4665 -3.4819 22 6 -0.2730 -6.5246 -2.1001 23 17 -1.5584 -7.3697 -1.2956 24 6 0.7246 -5.9153 -1.3596 25 1 -0.4849 0.8401 -0.0004 26 1 2.1872 -5.3687 1.5594 27 1 2.9831 -3.8240 1.9860 28 1 4.5070 -5.9675 1.3576 29 1 4.9541 -4.3572 0.7016 30 1 4.7316 -5.6253 -1.3362 31 1 3.3892 -6.6124 -0.6747 32 1 2.5750 -4.6539 -3.8820 33 1 0.8072 -5.7480 -5.2006 34 1 -1.0167 -6.9466 -4.0605 35 1 0.7032 -5.9643 -0.2809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192966733.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:02 Heat of formation + Delta-G solvation = -71.340156 kcal Electronic energy + Delta-G solvation = -22650.079971 eV Core-core repulsion = 19186.032021 eV Total energy + Delta-G solvation = -3464.047950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.58460 -37.55614 -36.14580 -35.19400 -33.91552 -33.08657 -31.57659 -30.54718 -30.22592 -27.61525 -26.12044 -22.97110 -22.34654 -21.29770 -20.52394 -18.69895 -17.67489 -16.65375 -16.31768 -15.74170 -15.18934 -14.96739 -14.77665 -14.08012 -13.89742 -13.48174 -13.41770 -13.21456 -12.96705 -12.79537 -12.19059 -11.99769 -11.88177 -11.33744 -11.25708 -11.22898 -11.19925 -10.95958 -10.91436 -10.61477 -10.58962 -10.47562 -10.32433 -10.24117 -10.13036 -9.25242 -8.93066 -8.64087 -8.41525 -8.16179 -6.69612 -5.32096 1.45007 1.54856 2.23860 2.36737 3.05507 3.12237 3.18439 3.86775 4.05667 4.59599 4.62620 4.74604 4.86735 5.05679 5.11625 5.22479 5.31483 5.51405 5.55454 5.70349 5.77754 5.84783 5.90283 5.92998 6.00620 6.08346 6.17599 6.23867 6.30544 6.43507 6.48669 6.57040 6.67267 6.96299 7.07118 7.32816 7.46632 7.97138 8.88645 10.23828 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.005495 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.946569 B = 5093.929237 C = 5557.218031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.262 1.262 7 C -1.022 5.022 8 H 0.101 0.899 9 S 2.722 3.278 10 O -0.988 6.988 11 O -1.002 7.002 12 N -1.015 6.015 13 C 0.122 3.878 14 C -0.130 4.130 15 C -0.119 4.119 16 C 0.193 3.807 17 H 0.085 0.915 18 C -0.063 4.063 19 C -0.098 4.098 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.030 4.030 23 Cl -0.082 7.082 24 C -0.093 4.093 25 H 0.291 0.709 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.032 -12.213 -4.547 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.186 1.186 7 C -1.155 5.155 8 H 0.119 0.881 9 S 2.824 3.176 10 O -0.978 6.978 11 O -0.992 6.992 12 N -0.849 5.849 13 C -0.004 4.004 14 C -0.169 4.169 15 C -0.158 4.158 16 C 0.086 3.914 17 H 0.103 0.897 18 C -0.065 4.065 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.136 4.136 22 C -0.056 4.056 23 Cl -0.053 7.053 24 C -0.112 4.112 25 H 0.101 0.899 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.725 -12.276 -4.441 14.255 hybrid contribution 0.671 1.325 0.090 1.488 sum 6.396 -10.951 -4.351 13.408 Atomic orbital electron populations 1.69901 1.06767 1.30715 1.40096 1.24754 0.94460 1.00761 0.88545 0.86187 0.80204 0.80134 0.79193 1.19160 1.19920 1.18648 1.30641 1.06112 1.11934 1.66822 0.88083 1.00374 0.71724 0.72549 0.72992 1.93389 1.71997 1.87235 1.45206 1.93363 1.72338 1.87533 1.46003 1.59474 1.62139 1.53319 1.09994 1.21817 0.93055 0.97252 0.88232 1.22800 0.97549 1.00690 0.95861 1.22683 0.98086 0.98247 0.96797 1.20110 0.90772 0.93905 0.86656 0.89710 1.20143 0.96123 0.96166 0.94020 1.21011 0.99020 0.98541 0.93113 1.20974 0.94132 0.97631 0.99789 1.20925 0.99532 1.01002 0.92164 1.20824 0.91695 1.00254 0.92861 1.98343 1.50240 1.76501 1.80236 1.20810 0.93190 0.96911 1.00284 0.89891 0.92419 0.90561 0.90515 0.90561 0.90339 0.90706 0.85465 0.85361 0.85449 0.85411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.15 13.19 55.43 0.73 -24.42 16 2 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 3 Si 0.92 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 7 C -1.02 -28.35 9.75 30.60 0.30 -28.05 16 8 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 9 S 2.72 72.95 5.17 -107.50 -0.56 72.39 16 10 O -0.99 -28.52 16.17 -57.18 -0.92 -29.44 16 11 O -1.00 -29.82 17.60 -57.18 -1.01 -30.83 16 12 N -1.02 -20.34 2.67 -105.42 -0.28 -20.62 16 13 C 0.12 1.99 6.98 -2.53 -0.02 1.98 16 14 C -0.13 -1.55 7.09 -24.58 -0.17 -1.73 16 15 C -0.12 -1.43 6.45 -24.90 -0.16 -1.59 16 16 C 0.19 3.18 3.27 -67.94 -0.22 2.96 16 17 H 0.08 1.35 8.03 -51.93 -0.42 0.94 16 18 C -0.06 -1.07 3.43 -104.63 -0.36 -1.43 16 19 C -0.10 -1.49 9.68 -39.58 -0.38 -1.87 16 20 C -0.11 -1.49 10.05 -39.59 -0.40 -1.88 16 21 C -0.12 -1.73 9.83 -39.55 -0.39 -2.11 16 22 C -0.03 -0.50 6.32 -39.49 -0.25 -0.75 16 23 Cl -0.08 -1.27 28.96 -51.86 -1.50 -2.77 16 24 C -0.09 -1.67 8.80 -39.55 -0.35 -2.01 16 25 H 0.29 7.77 8.31 -40.82 -0.34 7.44 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.85 7.78 -51.93 -0.40 0.45 16 32 H 0.13 1.60 8.04 -52.49 -0.42 1.18 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.13 2.32 7.72 -52.49 -0.41 1.92 16 LS Contribution 326.22 15.07 4.92 4.92 Total: -1.00 -35.32 326.22 -10.29 -45.61 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -4.15 Total: 2.39 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: -2.50 Total: -32.87 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.45 Total: -45.03 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: -1.93 Total: -60.27 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 72.95 SS G_CDS: -0.56 Total: 72.39 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.50 Total: -2.77 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.32 -10.29 -45.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192966733.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.725 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds