Wall clock time and date at job start Tue Mar 31 2020 10:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00500 * 2 1 4 4 H 1.48496 * 109.47065 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.46847 * 29.99701 * 3 2 1 6 6 H 1.48499 * 109.47533 * 149.99507 * 3 2 1 7 7 C 1.37881 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00155 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99949 * 359.97438 * 7 2 1 10 10 O 1.42096 * 106.40217 * 66.46163 * 9 7 2 11 11 O 1.42100 * 106.40509 * 293.54432 * 9 7 2 12 12 N 1.65602 * 107.21711 * 180.02562 * 9 7 2 13 13 C 1.47427 * 125.64616 * 90.03161 * 12 9 7 14 14 C 1.54914 * 104.82986 * 204.08910 * 13 12 9 15 15 C 1.55153 * 101.58113 * 322.98765 * 14 13 12 16 16 C 1.47317 * 125.61871 * 269.80056 * 12 9 7 17 17 H 1.09000 * 109.84974 * 59.58376 * 16 12 9 18 18 C 1.50703 * 110.06339 * 298.32157 * 16 12 9 19 19 C 1.38259 * 119.99028 * 140.80879 * 18 16 12 20 20 C 1.38225 * 120.02485 * 179.97438 * 19 18 16 21 21 C 1.38233 * 120.01420 * 0.02562 * 20 19 18 22 22 C 1.38334 * 119.98711 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 120.01607 * 180.02562 * 22 21 20 24 24 C 1.38195 * 119.99300 * 320.53962 * 18 16 12 25 25 H 0.96997 * 119.99592 * 0.02562 * 1 2 3 26 26 H 1.08996 * 110.37285 * 85.24667 * 13 12 9 27 27 H 1.09000 * 110.45726 * 322.97178 * 13 12 9 28 28 H 1.09001 * 111.00193 * 204.90992 * 14 13 12 29 29 H 1.08997 * 111.03549 * 81.07618 * 14 13 12 30 30 H 1.09002 * 110.72030 * 153.86743 * 15 14 13 31 31 H 1.09003 * 110.72184 * 276.96394 * 15 14 13 32 32 H 1.08001 * 119.99283 * 359.97438 * 19 18 16 33 33 H 1.07997 * 119.99269 * 180.02562 * 20 19 18 34 34 H 1.07999 * 120.00744 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.00449 * 0.02562 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 16 1.1235 -2.7200 0.0019 10 8 0.4509 -2.7961 -1.2475 11 8 0.4517 -2.7944 1.2519 12 7 2.2482 -3.9355 0.0030 13 6 2.8312 -4.5654 1.2016 14 6 4.1915 -5.1356 0.7279 15 6 3.8438 -5.6221 -0.7037 16 6 2.8278 -4.5691 -1.1940 17 1 3.3350 -3.8191 -1.8009 18 6 1.7449 -5.2384 -2.0004 19 6 1.7753 -5.1797 -3.3815 20 6 0.7827 -5.7938 -4.1219 21 6 -0.2414 -6.4665 -3.4819 22 6 -0.2730 -6.5246 -2.1001 23 17 -1.5584 -7.3697 -1.2956 24 6 0.7246 -5.9153 -1.3596 25 1 -0.4849 0.8401 -0.0004 26 1 2.1872 -5.3687 1.5594 27 1 2.9831 -3.8240 1.9860 28 1 4.5070 -5.9675 1.3576 29 1 4.9541 -4.3572 0.7016 30 1 4.7316 -5.6253 -1.3362 31 1 3.3892 -6.6124 -0.6747 32 1 2.5750 -4.6539 -3.8820 33 1 0.8072 -5.7480 -5.2006 34 1 -1.0167 -6.9466 -4.0605 35 1 0.7032 -5.9643 -0.2809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192966733.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:02 Heat of formation + Delta-G solvation = -95.552389 kcal Electronic energy + Delta-G solvation = -22651.129892 eV Core-core repulsion = 19186.032021 eV Total energy + Delta-G solvation = -3465.097872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.79667 -38.78218 -37.44689 -37.29820 -36.09860 -35.20336 -32.77328 -31.77280 -31.49627 -28.81233 -28.27230 -24.21361 -23.56254 -22.51007 -21.75641 -20.67601 -19.28115 -18.31867 -17.93442 -17.20113 -16.83793 -16.43852 -16.01904 -15.90957 -15.64220 -14.78791 -14.68248 -14.52748 -14.30845 -14.09179 -13.96418 -13.38036 -13.32647 -13.05774 -13.02495 -12.57043 -12.47328 -12.41737 -12.36611 -12.32032 -12.15299 -12.07238 -11.96917 -11.69581 -11.50141 -11.27449 -10.97709 -9.98877 -9.71811 -9.51799 -8.76277 -7.51310 0.19255 0.28618 0.40287 1.13280 1.31122 1.31941 1.48159 2.18527 2.55189 2.65260 2.97176 3.55967 3.72088 3.82596 3.86783 3.93540 4.11649 4.25257 4.34360 4.39762 4.47073 4.57872 4.66353 4.75527 4.85596 4.99549 5.04043 5.07668 5.10971 5.18112 5.28838 5.32075 5.37778 5.45173 5.65034 5.84077 5.88931 5.94647 6.75315 8.18423 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.005495 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.946569 B = 5093.929237 C = 5557.218031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.989 3.011 4 H -0.251 1.251 5 H -0.263 1.263 6 H -0.246 1.246 7 C -1.043 5.043 8 H 0.118 0.882 9 S 2.728 3.272 10 O -1.021 7.021 11 O -1.048 7.048 12 N -1.016 6.016 13 C 0.106 3.894 14 C -0.115 4.115 15 C -0.107 4.107 16 C 0.180 3.820 17 H 0.088 0.912 18 C -0.081 4.081 19 C -0.109 4.109 20 C -0.102 4.102 21 C -0.122 4.122 22 C -0.050 4.050 23 Cl -0.081 7.081 24 C -0.120 4.120 25 H 0.298 0.702 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.153 0.847 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.691 -12.340 -5.975 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.807 3.193 4 H -0.175 1.175 5 H -0.187 1.187 6 H -0.169 1.169 7 C -1.176 5.176 8 H 0.136 0.864 9 S 2.831 3.169 10 O -1.011 7.011 11 O -1.039 7.039 12 N -0.854 5.854 13 C -0.019 4.019 14 C -0.154 4.154 15 C -0.145 4.145 16 C 0.074 3.926 17 H 0.106 0.894 18 C -0.083 4.083 19 C -0.127 4.127 20 C -0.120 4.120 21 C -0.140 4.140 22 C -0.076 4.076 23 Cl -0.053 7.053 24 C -0.139 4.139 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.099 0.901 32 H 0.170 0.830 33 H 0.185 0.815 34 H 0.170 0.830 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.378 -12.426 -5.867 16.094 hybrid contribution -0.170 1.257 0.516 1.369 sum 8.208 -11.168 -5.351 14.858 Atomic orbital electron populations 1.70006 1.08871 1.32296 1.41553 1.26063 0.95364 1.05453 0.87509 0.85147 0.79191 0.74696 0.80270 1.17519 1.18736 1.16921 1.31028 1.07123 1.12838 1.66629 0.86401 0.99703 0.72317 0.73278 0.71578 1.93325 1.73747 1.88009 1.46024 1.93290 1.74460 1.88460 1.47677 1.58854 1.61479 1.52207 1.12878 1.22171 0.95787 0.96966 0.86963 1.22799 0.94657 1.01819 0.96089 1.22702 0.97902 0.96873 0.97048 1.20537 0.91563 0.95066 0.85427 0.89402 1.20354 0.96290 0.96456 0.95183 1.21428 1.00169 0.98595 0.92544 1.21466 0.92889 0.95918 1.01700 1.21316 1.00422 1.00836 0.91456 1.21078 0.91762 1.00825 0.93933 1.98332 1.50079 1.76429 1.80437 1.20826 0.94662 0.98712 0.99714 0.89169 0.92224 0.91756 0.87165 0.89594 0.86890 0.90071 0.82959 0.81540 0.82983 0.87161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.74 13.19 21.45 0.28 -54.46 16 2 C 0.07 3.89 5.46 84.66 0.46 4.35 16 3 Si 0.99 41.58 29.54 68.60 2.03 43.60 16 4 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 6 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 7 C -1.04 -58.58 9.75 67.74 0.66 -57.92 16 8 H 0.12 5.95 7.81 -2.91 -0.02 5.93 16 9 S 2.73 151.39 5.17 -56.49 -0.29 151.10 16 10 O -1.02 -61.16 16.17 -128.00 -2.07 -63.23 16 11 O -1.05 -65.70 17.60 -128.00 -2.25 -67.95 16 12 N -1.02 -41.24 2.67 -487.45 -1.30 -42.54 16 13 C 0.11 3.45 6.98 86.86 0.61 4.06 16 14 C -0.11 -2.42 7.09 31.99 0.23 -2.20 16 15 C -0.11 -2.26 6.45 31.78 0.20 -2.05 16 16 C 0.18 5.76 3.27 44.54 0.15 5.90 16 17 H 0.09 2.69 8.03 -2.39 -0.02 2.67 16 18 C -0.08 -2.74 3.43 -19.87 -0.07 -2.81 16 19 C -0.11 -3.12 9.68 22.27 0.22 -2.90 16 20 C -0.10 -2.59 10.05 22.27 0.22 -2.37 16 21 C -0.12 -3.42 9.83 22.29 0.22 -3.20 16 22 C -0.05 -1.67 6.32 22.33 0.14 -1.53 16 23 Cl -0.08 -2.57 28.96 -2.72 -0.08 -2.65 16 24 C -0.12 -4.40 8.80 22.29 0.20 -4.20 16 25 H 0.30 16.36 8.31 -92.71 -0.77 15.59 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.64 7.78 -2.39 -0.02 1.62 16 32 H 0.15 3.44 8.04 -2.91 -0.02 3.41 16 33 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 35 H 0.11 4.26 7.72 -2.91 -0.02 4.24 16 Total: -1.00 -80.77 326.22 0.65 -80.12 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 1.10 Total: 20.86 kcal Atomic # 6 Polarization: -68.09 SS G_CDS: 3.23 Total: -64.86 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -1.02 Total: -97.00 kcal Atomic # 8 Polarization: -126.86 SS G_CDS: -4.32 Total: -131.18 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 151.39 SS G_CDS: -0.29 Total: 151.10 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -0.08 Total: -2.65 kcal Total: -80.77 0.65 -80.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192966733.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.431 kcal (2) G-P(sol) polarization free energy of solvation -80.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds