Wall clock time and date at job start Tue Mar 31 2020 10:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00310 * 2 1 4 4 H 1.48500 * 109.47346 * 240.00032 * 3 2 1 5 5 H 1.48506 * 109.46986 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47313 * 119.99767 * 3 2 1 7 7 C 1.37880 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99944 * 179.97438 * 7 2 1 9 9 S 1.76192 * 120.00182 * 0.27856 * 7 2 1 10 10 O 1.42101 * 106.39824 * 304.93825 * 9 7 2 11 11 O 1.42100 * 106.40548 * 77.85604 * 9 7 2 12 12 N 1.65600 * 107.21985 * 191.39851 * 9 7 2 13 13 C 1.46496 * 119.99965 * 66.00289 * 12 9 7 14 14 C 1.50705 * 112.85278 * 50.12245 * 13 12 9 15 15 C 1.38235 * 120.00661 * 254.02114 * 14 13 12 16 16 C 1.38215 * 120.01482 * 179.74089 * 15 14 13 17 17 C 1.38263 * 120.02572 * 0.55623 * 16 15 14 18 18 C 1.38193 * 120.01190 * 359.69680 * 17 16 15 19 19 C 1.38326 * 120.00537 * 74.29086 * 14 13 12 20 20 Cl 1.73596 * 120.01646 * 0.02562 * 19 14 13 21 21 C 1.53782 * 113.61500 * 278.81311 * 13 12 9 22 22 C 1.53780 * 87.08138 * 270.88195 * 21 13 12 23 23 C 1.53781 * 87.08206 * 334.56693 * 22 21 13 24 24 H 0.97001 * 119.99648 * 0.02562 * 1 2 3 25 25 H 0.96999 * 119.99677 * 246.00239 * 12 9 7 26 26 H 1.08007 * 119.99101 * 359.97438 * 15 14 13 27 27 H 1.08000 * 119.99138 * 180.24874 * 16 15 14 28 28 H 1.07997 * 119.99538 * 179.72211 * 17 16 15 29 29 H 1.08006 * 120.01100 * 180.02562 * 18 17 16 30 30 H 1.08994 * 113.61254 * 25.43635 * 21 13 12 31 31 H 1.09003 * 113.61123 * 156.33706 * 21 13 12 32 32 H 1.08998 * 113.61714 * 220.01274 * 22 21 13 33 33 H 1.09003 * 113.61161 * 89.11206 * 22 21 13 34 34 H 1.08999 * 113.61491 * 270.87912 * 23 22 21 35 35 H 1.09001 * 113.61373 * 139.97472 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0086 10 8 0.2421 -2.6803 1.1053 11 8 0.6801 -2.9203 -1.3437 12 7 2.2199 -3.9207 0.3051 13 6 2.8777 -3.9887 1.6124 14 6 1.9052 -3.9166 2.7614 15 6 1.8068 -2.7601 3.5122 16 6 0.9111 -2.6919 4.5627 17 6 0.1212 -3.7842 4.8704 18 6 0.2224 -4.9427 4.1238 19 6 1.1148 -5.0095 3.0683 20 17 1.2433 -6.4648 2.1307 21 6 4.0713 -3.0292 1.7520 22 6 4.9471 -4.1629 1.1930 23 6 3.8899 -5.1401 1.7336 24 1 -0.4850 0.8401 -0.0004 25 1 2.4266 -4.5790 -0.3767 26 1 2.4272 -1.9083 3.2756 27 1 0.8316 -1.7868 5.1465 28 1 -0.5753 -3.7319 5.6941 29 1 -0.3949 -5.7958 4.3639 30 1 4.0117 -2.1600 1.0972 31 1 4.3026 -2.7675 2.7846 32 1 5.9153 -4.2504 1.6860 33 1 5.0235 -4.1599 0.1056 34 1 4.0716 -5.4554 2.7610 35 1 3.6838 -5.9748 1.0637 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193002972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:32 Heat of formation + Delta-G solvation = -69.216789 kcal Electronic energy + Delta-G solvation = -23334.849626 eV Core-core repulsion = 19870.893751 eV Total energy + Delta-G solvation = -3463.955874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21491 -38.90452 -37.29407 -37.20759 -35.96164 -35.12531 -33.34636 -31.84965 -31.42425 -28.31203 -26.64369 -25.78514 -23.25727 -22.55714 -20.99412 -20.30994 -19.29057 -18.21305 -17.94824 -17.06915 -16.86079 -16.44783 -16.01173 -15.79232 -15.66589 -15.24759 -14.69973 -14.54033 -14.28245 -13.91652 -13.48734 -13.30440 -12.97894 -12.95947 -12.63127 -12.54968 -12.41823 -12.36024 -12.27491 -12.19154 -12.06772 -11.99877 -11.63952 -11.42458 -11.18850 -11.08421 -10.73758 -10.09522 -9.60814 -9.41179 -8.66329 -7.37756 0.31583 0.46624 0.57692 1.30486 1.35864 1.37607 1.49143 2.23689 2.65345 2.76505 3.14403 3.58477 3.66589 3.74470 3.92691 3.98268 4.15101 4.27124 4.29501 4.54198 4.66007 4.71830 4.87491 4.89697 4.93486 5.02213 5.12836 5.15075 5.21231 5.28373 5.41599 5.42775 5.57675 5.61109 5.72433 6.03174 6.07125 6.42961 6.86768 8.27971 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.007005 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.428595 B = 3996.256830 C = 4304.447005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.977 3.023 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.243 1.243 7 C -1.029 5.029 8 H 0.122 0.878 9 S 2.712 3.288 10 O -1.005 7.005 11 O -1.067 7.067 12 N -1.097 6.097 13 C 0.189 3.811 14 C -0.078 4.078 15 C -0.086 4.086 16 C -0.124 4.124 17 C -0.109 4.109 18 C -0.128 4.128 19 C -0.030 4.030 20 Cl -0.076 7.076 21 C -0.165 4.165 22 C -0.126 4.126 23 C -0.115 4.115 24 H 0.294 0.706 25 H 0.412 0.588 26 H 0.127 0.873 27 H 0.143 0.857 28 H 0.157 0.843 29 H 0.146 0.854 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.736 -7.321 10.180 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.796 3.204 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.166 1.166 7 C -1.163 5.163 8 H 0.140 0.860 9 S 2.813 3.187 10 O -0.994 6.994 11 O -1.058 7.058 12 N -0.853 5.853 13 C 0.099 3.901 14 C -0.080 4.080 15 C -0.105 4.105 16 C -0.142 4.142 17 C -0.127 4.127 18 C -0.147 4.147 19 C -0.057 4.057 20 Cl -0.047 7.047 21 C -0.203 4.203 22 C -0.163 4.163 23 C -0.153 4.153 24 H 0.104 0.896 25 H 0.245 0.755 26 H 0.145 0.855 27 H 0.161 0.839 28 H 0.174 0.826 29 H 0.164 0.836 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.579 -7.423 10.060 14.620 hybrid contribution 0.299 0.811 -0.832 1.200 sum 7.878 -6.611 9.228 13.818 Atomic orbital electron populations 1.70035 1.08601 1.31810 1.41387 1.25825 0.95138 1.04676 0.87849 0.85349 0.78937 0.75324 0.80791 1.18171 1.19417 1.16612 1.30922 1.06919 1.12096 1.66342 0.85966 1.00166 0.73039 0.74054 0.71419 1.93363 1.64841 1.87552 1.53661 1.93305 1.82208 1.88116 1.42130 1.55222 1.63109 1.46354 1.20570 1.19881 0.89312 1.00982 0.79915 1.19781 0.97826 0.93303 0.97087 1.21106 0.98685 0.96028 0.94705 1.21445 0.95652 0.99448 0.97663 1.21361 0.99093 0.92087 1.00181 1.21228 0.98217 1.00194 0.95060 1.20850 1.00262 0.88631 0.95918 1.98305 1.97365 1.35901 1.73153 1.23728 0.95000 0.98438 1.03181 1.22764 0.97888 0.94508 1.01124 1.23230 0.93462 0.95625 1.03031 0.89573 0.75461 0.85479 0.83949 0.82581 0.83630 0.90730 0.87739 0.88781 0.90047 0.87908 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.90 12.84 21.45 0.28 -51.62 16 2 C 0.08 4.23 5.45 84.66 0.46 4.69 16 3 Si 0.98 40.11 29.54 68.60 2.03 42.13 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.24 -9.08 7.11 99.48 0.71 -8.37 16 7 C -1.03 -54.41 9.03 67.73 0.61 -53.79 16 8 H 0.12 5.78 5.70 -2.91 -0.02 5.76 16 9 S 2.71 144.48 5.13 -56.49 -0.29 144.19 16 10 O -1.00 -57.29 14.49 -128.00 -1.86 -59.15 16 11 O -1.07 -65.45 18.02 -128.00 -2.31 -67.75 16 12 N -1.10 -43.77 5.63 -153.08 -0.86 -44.64 16 13 C 0.19 6.32 0.59 3.39 0.00 6.33 16 14 C -0.08 -2.80 3.06 -19.84 -0.06 -2.86 16 15 C -0.09 -3.11 8.08 22.26 0.18 -2.93 16 16 C -0.12 -3.92 10.05 22.27 0.22 -3.70 16 17 C -0.11 -3.12 10.05 22.26 0.22 -2.90 16 18 C -0.13 -3.93 9.83 22.29 0.22 -3.72 16 19 C -0.03 -1.02 6.22 22.32 0.14 -0.88 16 20 Cl -0.08 -2.35 26.16 -2.72 -0.07 -2.42 16 21 C -0.16 -4.87 6.29 31.12 0.20 -4.68 16 22 C -0.13 -2.92 7.99 31.12 0.25 -2.67 16 23 C -0.11 -2.88 5.64 31.12 0.18 -2.71 16 24 H 0.29 15.68 8.31 -92.71 -0.77 14.91 16 25 H 0.41 14.61 8.76 -96.75 -0.85 13.76 16 26 H 0.13 4.50 6.86 -2.91 -0.02 4.48 16 27 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 28 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.07 2.53 5.27 -2.39 -0.01 2.52 16 31 H 0.10 2.68 7.27 -2.39 -0.02 2.67 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.10 2.30 8.09 -2.39 -0.02 2.28 16 35 H 0.08 1.91 7.62 -2.39 -0.02 1.90 16 Total: -1.00 -74.24 313.76 -0.17 -74.41 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.29 Total: 34.66 kcal Atomic # 6 Polarization: -72.44 SS G_CDS: 2.62 Total: -69.82 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -0.59 Total: -96.26 kcal Atomic # 8 Polarization: -122.74 SS G_CDS: -4.16 Total: -126.90 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.13 kcal Atomic # 16 Polarization: 144.48 SS G_CDS: -0.29 Total: 144.19 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.07 Total: -2.42 kcal Total: -74.24 -0.17 -74.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.197 kcal (2) G-P(sol) polarization free energy of solvation -74.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds