Wall clock time and date at job start Tue Mar 31 2020 10:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28464 * 124.88454 * 2 1 4 4 C 1.31801 * 110.10339 * 179.97438 * 3 2 1 5 5 C 1.47713 * 126.51150 * 179.97438 * 4 3 2 6 6 O 1.21577 * 119.99753 * 180.02562 * 5 4 3 7 7 N 1.34769 * 120.00296 * 0.02562 * 5 4 3 8 8 C 1.46498 * 120.00388 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47500 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47191 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47239 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99747 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00461 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99763 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00255 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47256 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46969 * 120.00210 * 15 13 11 18 18 H 1.48500 * 109.47241 * 240.00333 * 15 13 11 19 19 C 1.41502 * 106.97496 * 359.97438 * 4 3 2 20 20 C 1.35065 * 124.88806 * 179.97438 * 2 1 3 21 21 Br 1.89105 * 126.39539 * 0.02562 * 20 2 1 22 22 H 1.09002 * 109.47608 * 90.02454 * 1 2 3 23 23 H 1.09005 * 109.47101 * 210.02799 * 1 2 3 24 24 H 1.09005 * 109.47414 * 330.02230 * 1 2 3 25 25 H 0.97007 * 120.00118 * 359.97438 * 7 5 4 26 26 H 1.09002 * 109.46813 * 299.99956 * 8 7 5 27 27 H 1.09000 * 109.47803 * 59.99359 * 8 7 5 28 28 H 1.09002 * 109.46787 * 299.99648 * 9 8 7 29 29 H 1.08992 * 109.47382 * 59.99450 * 9 8 7 30 30 H 1.09002 * 109.47187 * 299.99672 * 10 9 8 31 31 H 1.09001 * 109.47033 * 59.99873 * 10 9 8 32 32 H 0.96996 * 120.00074 * 179.97438 * 14 13 11 33 33 H 1.08000 * 127.25242 * 180.02562 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4741 0.7175 0.0006 5 6 4.6268 1.6412 0.0002 6 8 5.7595 1.1997 0.0003 7 7 4.4228 2.9734 -0.0002 8 6 5.5660 3.8895 -0.0011 9 6 5.0620 5.3341 -0.0009 10 6 6.2560 6.2909 -0.0012 11 6 5.7595 7.7138 -0.0015 12 1 4.6985 7.9155 -0.0011 13 6 6.6598 8.7581 -0.0013 14 7 7.9518 8.5124 -0.0013 15 14 6.0444 10.5217 -0.0010 16 1 4.5594 10.5279 -0.0004 17 1 6.5423 11.2195 1.2117 18 1 6.5422 11.2199 -1.2134 19 6 3.5282 -0.6964 0.0015 20 6 2.2375 -1.1079 0.0005 21 35 1.6307 -2.8989 0.0006 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3634 0.8902 0.5135 25 1 3.5190 3.3257 -0.0007 26 1 6.1712 3.7161 0.8887 27 1 6.1706 3.7154 -0.8912 28 1 4.4565 5.5078 -0.8905 29 1 4.4578 5.5080 0.8894 30 1 6.8611 6.1170 0.8887 31 1 6.8605 6.1171 -0.8913 32 1 8.5851 9.2470 -0.0015 33 1 4.4123 -1.3168 0.0026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194441254.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:10 Heat of formation + Delta-G solvation = 32.465285 kcal Electronic energy + Delta-G solvation = -17336.899944 eV Core-core repulsion = 14252.465529 eV Total energy + Delta-G solvation = -3084.434415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.032 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.05226 -39.20366 -35.40901 -33.98764 -33.28866 -32.80595 -31.20124 -29.76118 -28.15394 -26.53420 -23.87977 -22.35759 -21.66428 -20.62889 -19.66392 -17.92110 -16.85268 -16.66621 -16.36500 -15.37747 -15.21174 -14.47697 -14.41928 -14.03850 -13.90755 -13.39991 -13.22523 -13.09961 -12.27477 -11.83161 -11.82705 -11.66507 -11.61846 -10.90830 -10.88302 -10.71656 -10.56567 -10.13569 -9.84434 -9.52522 -9.40885 -9.36189 -9.09027 -8.75555 -8.35678 -6.00202 -4.02979 0.66703 1.19866 1.62087 2.04332 3.31265 3.34511 3.38913 3.40154 3.42792 3.91678 4.45860 4.55968 4.60528 4.77218 4.86542 5.07594 5.29806 5.35706 5.72893 5.80494 5.93022 6.07447 6.19123 6.47512 6.62733 6.85110 7.02215 7.33742 7.66088 7.75798 7.78638 7.98994 8.32952 8.40812 9.03947 9.61121 11.11196 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.045906 B = 0.002160 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.796037 B =12959.603253 C =13538.348639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.265 5.265 3 N -0.236 5.236 4 C -0.005 4.005 5 C 0.597 3.403 6 O -0.532 6.532 7 N -0.710 5.710 8 C 0.116 3.884 9 C -0.121 4.121 10 C 0.023 3.977 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.131 4.131 20 C -0.009 4.009 21 Br 0.027 6.973 22 H 0.092 0.908 23 H 0.098 0.902 24 H 0.106 0.894 25 H 0.405 0.595 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.260 0.740 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.846 -25.869 0.051 32.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.055 5.055 3 N -0.074 5.074 4 C -0.165 4.165 5 C 0.380 3.620 6 O -0.407 6.407 7 N -0.360 5.360 8 C -0.007 4.007 9 C -0.159 4.159 10 C -0.014 4.014 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.162 4.162 20 C -0.211 4.211 21 Br 0.109 6.891 22 H 0.111 0.889 23 H 0.116 0.884 24 H 0.124 0.876 25 H 0.239 0.761 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.907 -25.795 0.052 31.982 hybrid contribution -0.198 0.843 -0.012 0.866 sum -19.105 -24.952 0.040 31.426 Atomic orbital electron populations 1.22351 0.72497 1.06117 1.05238 1.45462 1.08010 1.01541 1.50537 1.73653 1.03232 1.12494 1.17977 1.22095 0.90912 0.93878 1.09646 1.16798 0.86183 0.81802 0.77184 1.90813 1.22222 1.77152 1.50540 1.46070 1.11520 1.05165 1.73231 1.21733 0.87395 0.89224 1.02308 1.21895 1.01353 0.91629 1.01025 1.19040 0.91968 0.92705 0.97719 1.21246 0.92892 0.91079 1.50698 0.92588 1.25033 0.94891 0.99275 0.95327 1.69976 1.00866 1.31738 1.50722 0.86528 0.78930 0.84896 0.77581 1.19772 1.21017 1.21011 1.21698 0.95600 0.93932 1.04927 1.23110 0.93008 0.88353 1.16652 1.96796 1.89035 1.05159 1.98066 0.88935 0.88365 0.87571 0.76079 0.91396 0.91395 0.92639 0.92640 0.96197 0.96200 0.92993 0.80876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.38 11.11 59.84 0.66 1.04 16 2 N -0.27 -2.55 3.70 -66.32 -0.25 -2.79 16 3 N -0.24 -2.89 11.67 33.42 0.39 -2.50 16 4 C -0.01 -0.07 7.13 -82.77 -0.59 -0.66 16 5 C 0.60 9.82 7.82 -12.39 -0.10 9.72 16 6 O -0.53 -10.33 16.93 5.30 0.09 -10.25 16 7 N -0.71 -11.18 5.55 -61.29 -0.34 -11.52 16 8 C 0.12 2.09 5.67 -4.04 -0.02 2.07 16 9 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 C -0.13 -1.57 10.78 -39.33 -0.42 -2.00 16 20 C -0.01 -0.09 7.33 -17.12 -0.13 -0.21 16 21 Br 0.03 0.19 33.27 -68.01 -2.26 -2.07 16 22 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.10 0.31 7.56 -51.93 -0.39 -0.09 16 24 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.40 5.61 8.20 -40.82 -0.33 5.27 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 314.92 15.07 4.75 4.75 Total: -1.00 -33.26 314.92 -7.27 -40.53 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.07 Total: -0.93 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -1.29 Total: -5.58 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.54 Total: -43.03 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 35 Polarization: 0.19 SS G_CDS: -2.26 Total: -2.07 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.26 -7.27 -40.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194441254.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.993 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds