Wall clock time and date at job start Tue Mar 31 2020 10:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28464 * 124.88454 * 2 1 4 4 C 1.31801 * 110.10339 * 179.97438 * 3 2 1 5 5 C 1.47713 * 126.51150 * 179.97438 * 4 3 2 6 6 O 1.21577 * 119.99753 * 180.02562 * 5 4 3 7 7 N 1.34769 * 120.00296 * 0.02562 * 5 4 3 8 8 C 1.46498 * 120.00388 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47500 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47191 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47239 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99747 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00461 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99763 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00255 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47256 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46969 * 120.00210 * 15 13 11 18 18 H 1.48500 * 109.47241 * 240.00333 * 15 13 11 19 19 C 1.41502 * 106.97496 * 359.97438 * 4 3 2 20 20 C 1.35065 * 124.88806 * 179.97438 * 2 1 3 21 21 Br 1.89105 * 126.39539 * 0.02562 * 20 2 1 22 22 H 1.09002 * 109.47608 * 90.02454 * 1 2 3 23 23 H 1.09005 * 109.47101 * 210.02799 * 1 2 3 24 24 H 1.09005 * 109.47414 * 330.02230 * 1 2 3 25 25 H 0.97007 * 120.00118 * 359.97438 * 7 5 4 26 26 H 1.09002 * 109.46813 * 299.99956 * 8 7 5 27 27 H 1.09000 * 109.47803 * 59.99359 * 8 7 5 28 28 H 1.09002 * 109.46787 * 299.99648 * 9 8 7 29 29 H 1.08992 * 109.47382 * 59.99450 * 9 8 7 30 30 H 1.09002 * 109.47187 * 299.99672 * 10 9 8 31 31 H 1.09001 * 109.47033 * 59.99873 * 10 9 8 32 32 H 0.96996 * 120.00074 * 179.97438 * 14 13 11 33 33 H 1.08000 * 127.25242 * 180.02562 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4741 0.7175 0.0006 5 6 4.6268 1.6412 0.0002 6 8 5.7595 1.1997 0.0003 7 7 4.4228 2.9734 -0.0002 8 6 5.5660 3.8895 -0.0011 9 6 5.0620 5.3341 -0.0009 10 6 6.2560 6.2909 -0.0012 11 6 5.7595 7.7138 -0.0015 12 1 4.6985 7.9155 -0.0011 13 6 6.6598 8.7581 -0.0013 14 7 7.9518 8.5124 -0.0013 15 14 6.0444 10.5217 -0.0010 16 1 4.5594 10.5279 -0.0004 17 1 6.5423 11.2195 1.2117 18 1 6.5422 11.2199 -1.2134 19 6 3.5282 -0.6964 0.0015 20 6 2.2375 -1.1079 0.0005 21 35 1.6307 -2.8989 0.0006 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3634 0.8902 0.5135 25 1 3.5190 3.3257 -0.0007 26 1 6.1712 3.7161 0.8887 27 1 6.1706 3.7154 -0.8912 28 1 4.4565 5.5078 -0.8905 29 1 4.4578 5.5080 0.8894 30 1 6.8611 6.1170 0.8887 31 1 6.8605 6.1171 -0.8913 32 1 8.5851 9.2470 -0.0015 33 1 4.4123 -1.3168 0.0026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194441254.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:09 Heat of formation + Delta-G solvation = 9.519376 kcal Electronic energy + Delta-G solvation = -17337.894953 eV Core-core repulsion = 14252.465529 eV Total energy + Delta-G solvation = -3085.429424 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.032 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.90162 -40.53843 -37.00869 -35.24739 -34.70765 -33.60176 -32.97651 -30.58070 -29.29191 -27.98836 -25.40067 -23.74197 -22.55493 -22.28085 -20.90784 -18.92125 -18.45286 -17.64914 -17.63815 -16.84266 -16.63710 -16.40204 -15.36026 -15.27574 -15.09298 -14.47725 -14.20742 -13.84642 -13.75008 -13.57786 -13.48345 -12.77602 -12.56230 -12.47187 -12.45892 -12.33892 -11.72632 -11.68424 -11.58067 -11.29244 -11.10001 -10.55051 -10.44267 -10.15780 -10.08844 -8.18717 -6.29897 -0.06671 0.28228 0.66052 1.36396 1.42387 1.42466 1.55806 2.12550 2.20152 2.43271 3.07874 3.15098 3.75654 4.05563 4.15520 4.21238 4.25114 4.27962 4.39944 4.55359 4.57998 4.94223 4.94728 5.02015 5.17042 5.32756 5.37470 5.52988 5.71798 5.85296 6.22992 6.32292 6.62755 6.87503 7.06793 7.39495 8.93678 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.045906 B = 0.002160 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.796037 B =12959.603253 C =13538.348639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.253 5.253 3 N -0.240 5.240 4 C -0.033 4.033 5 C 0.598 3.402 6 O -0.570 6.570 7 N -0.701 5.701 8 C 0.129 3.871 9 C -0.102 4.102 10 C 0.024 3.976 11 C -0.540 4.540 12 H 0.065 0.935 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.967 3.033 16 H -0.259 1.259 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.148 4.148 20 C -0.004 4.004 21 Br 0.060 6.940 22 H 0.112 0.888 23 H 0.119 0.881 24 H 0.118 0.882 25 H 0.416 0.584 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.067 0.933 30 H -0.005 1.005 31 H -0.006 1.006 32 H 0.263 0.737 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.819 -26.306 0.035 34.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.044 5.044 3 N -0.079 5.079 4 C -0.191 4.191 5 C 0.384 3.616 6 O -0.448 6.448 7 N -0.352 5.352 8 C 0.005 3.995 9 C -0.140 4.140 10 C -0.014 4.014 11 C -0.578 4.578 12 H 0.084 0.916 13 C -0.201 4.201 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.183 1.183 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.178 4.178 20 C -0.207 4.207 21 Br 0.142 6.858 22 H 0.130 0.870 23 H 0.137 0.863 24 H 0.137 0.863 25 H 0.252 0.748 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.013 0.987 31 H 0.013 0.987 32 H 0.072 0.928 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -21.929 -26.234 0.036 34.192 hybrid contribution 0.625 0.846 -0.009 1.052 sum -21.304 -25.388 0.028 33.143 Atomic orbital electron populations 1.22846 0.69641 1.07849 1.07103 1.45935 1.09476 1.00855 1.48153 1.73585 1.02698 1.13587 1.18079 1.21676 0.90780 0.94080 1.12541 1.17108 0.86573 0.81929 0.76034 1.90782 1.23984 1.77763 1.52262 1.45850 1.11301 1.04896 1.73152 1.21368 0.87933 0.88780 1.01394 1.21603 0.99082 0.91205 1.02103 1.18947 0.93493 0.93673 0.95284 1.21703 0.93468 0.92278 1.50322 0.91646 1.26021 0.94999 1.04301 0.94819 1.70116 1.02315 1.33322 1.51770 0.85362 0.78999 0.78806 0.77641 1.18280 1.20549 1.20538 1.21820 0.96897 0.93296 1.05803 1.23308 0.92478 0.89885 1.15060 1.96837 1.88503 1.02519 1.97931 0.86957 0.86270 0.86329 0.74750 0.92436 0.92432 0.91461 0.91461 0.98710 0.98714 0.92798 0.80706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 11.11 127.77 1.42 1.83 16 2 N -0.25 -4.30 3.70 -363.74 -1.35 -5.65 16 3 N -0.24 -5.55 11.67 -48.18 -0.56 -6.11 16 4 C -0.03 -0.90 7.13 42.46 0.30 -0.60 16 5 C 0.60 19.99 7.82 86.75 0.68 20.67 16 6 O -0.57 -22.90 16.93 -3.96 -0.07 -22.97 16 7 N -0.70 -22.08 5.55 -466.11 -2.59 -24.67 16 8 C 0.13 4.74 5.67 86.38 0.49 5.23 16 9 C -0.10 -4.06 5.27 30.59 0.16 -3.90 16 10 C 0.02 1.25 4.97 29.85 0.15 1.40 16 11 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 12 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 13 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 14 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 15 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 16 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 19 C -0.15 -3.47 10.78 22.44 0.24 -3.23 16 20 C 0.00 -0.08 7.33 83.56 0.61 0.54 16 21 Br 0.06 0.70 33.27 -20.37 -0.68 0.02 16 22 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.12 0.31 7.56 -2.38 -0.02 0.29 16 24 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 25 H 0.42 11.16 8.20 -92.70 -0.76 10.40 16 26 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 30 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -72.53 314.92 2.19 -70.33 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.37 Total: 8.03 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 4.75 Total: -8.01 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -4.21 Total: -93.57 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.07 Total: -22.97 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 35 Polarization: 0.70 SS G_CDS: -0.68 Total: 0.02 kcal Total: -72.53 2.19 -70.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194441254.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.853 kcal (2) G-P(sol) polarization free energy of solvation -72.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds