Wall clock time and date at job start Tue Mar 31 2020 11:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39609 * 120.48022 * 131.99071 * 3 2 1 5 5 N 1.31636 * 120.65953 * 180.02562 * 4 3 2 6 6 C 1.32574 * 121.79910 * 359.97280 * 5 4 3 7 7 N 1.38688 * 119.54889 * 179.97438 * 6 5 4 8 8 C 1.39826 * 120.00234 * 354.73379 * 7 6 5 9 9 C 1.38961 * 120.00356 * 326.94105 * 8 7 6 10 10 C 1.37998 * 119.99233 * 179.76328 * 9 8 7 11 11 C 1.38904 * 120.00650 * 0.48926 * 10 9 8 12 12 O 1.35786 * 119.99690 * 179.74544 * 11 10 9 13 13 C 1.34814 * 117.00233 * 185.54353 * 12 11 10 14 14 H 1.08000 * 120.00076 * 354.87980 * 13 12 11 15 15 C 1.38618 * 119.99771 * 174.88704 * 13 12 11 16 16 N 1.31580 * 120.00518 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99653 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46930 * 60.00108 * 17 15 13 19 19 H 1.48504 * 109.46813 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47173 * 299.99814 * 17 15 13 21 21 C 1.38912 * 120.01294 * 359.76266 * 11 10 9 22 22 C 1.37998 * 120.00514 * 0.02562 * 21 11 10 23 23 C 1.39459 * 120.90342 * 0.02562 * 6 5 4 24 24 Cl 1.73600 * 120.37929 * 180.02562 * 23 6 5 25 25 C 1.37989 * 119.23496 * 0.02562 * 23 6 5 26 26 H 1.07997 * 119.67078 * 0.02562 * 4 3 2 27 27 H 0.97004 * 119.99836 * 174.72635 * 7 6 5 28 28 H 1.08002 * 120.00649 * 359.97438 * 9 8 7 29 29 H 1.08003 * 119.99583 * 180.23340 * 10 9 8 30 30 H 0.97001 * 120.00207 * 180.02562 * 16 15 13 31 31 H 1.08001 * 119.99987 * 179.97438 * 21 11 10 32 32 H 1.07998 * 120.00241 * 179.97438 * 22 21 11 33 33 H 1.08002 * 120.81675 * 179.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2757 0.8059 -0.8943 5 7 4.5921 0.8089 -0.8977 6 6 5.2945 0.0568 -0.0618 7 7 6.6802 0.0960 -0.1062 8 6 7.3272 0.8386 -1.0987 9 6 6.7569 0.9578 -2.3603 10 6 7.3933 1.6948 -3.3382 11 6 8.6087 2.3091 -3.0645 12 8 9.2372 3.0299 -4.0284 13 6 10.4650 3.5035 -3.7359 14 1 10.8711 3.3749 -2.7435 15 6 11.2062 4.1557 -4.7089 16 7 10.7117 4.3121 -5.9182 17 14 12.9073 4.8126 -4.3033 18 1 13.7824 3.6910 -3.8774 19 1 13.4867 5.4625 -5.5064 20 1 12.8053 5.8059 -3.2042 21 6 9.1816 2.1858 -1.8051 22 6 8.5435 1.4525 -0.8255 23 6 4.6592 -0.7739 0.8608 24 17 5.5925 -1.7524 1.9494 25 6 3.2803 -0.8090 0.8983 26 1 2.7379 1.4326 -1.5902 27 1 7.2005 -0.3918 0.5513 28 1 5.8141 0.4765 -2.5745 29 1 6.9482 1.7906 -4.3176 30 1 11.2306 4.7682 -6.5992 31 1 10.1268 2.6631 -1.5927 32 1 8.9891 1.3563 0.1535 33 1 2.7619 -1.4433 1.6021 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212605224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:54 Heat of formation + Delta-G solvation = 57.623934 kcal Electronic energy + Delta-G solvation = -21578.955906 eV Core-core repulsion = 18017.349058 eV Total energy + Delta-G solvation = -3561.606848 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.052 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.81451 -40.64957 -38.87230 -37.82076 -37.49732 -36.04771 -34.16902 -33.56035 -31.94318 -31.50463 -29.10071 -27.26925 -25.31383 -24.84765 -23.54220 -22.48771 -20.25103 -19.96987 -19.10023 -19.04091 -18.23799 -16.95823 -16.33592 -16.27596 -16.18359 -15.92889 -15.45734 -15.33658 -15.10901 -14.68453 -14.48030 -14.32319 -14.11511 -14.02619 -13.66327 -13.53213 -13.30334 -13.13016 -13.01447 -12.70797 -12.38502 -12.18955 -12.13457 -11.74756 -11.16407 -10.80599 -10.70793 -10.60322 -9.75588 -9.54066 -8.42205 -8.27473 -6.08167 -0.45260 -0.00074 0.61311 0.76184 0.92432 1.38923 1.48958 1.54606 1.67081 1.89641 1.92610 2.21840 2.74465 2.82287 2.90499 3.22122 3.33118 3.59465 3.61058 3.71250 4.10530 4.20005 4.23285 4.39869 4.57018 4.67102 4.79432 4.89218 5.11400 5.17359 5.26126 5.42561 5.49172 5.70786 5.85846 6.07270 6.16136 6.30908 6.47688 6.95255 7.03072 7.84735 8.81008 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.022953 B = 0.002748 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.594422 B =10186.372275 C =11222.460484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.295 3.705 3 C -0.134 4.134 4 C 0.218 3.782 5 N -0.537 5.537 6 C 0.426 3.574 7 N -0.628 5.628 8 C 0.072 3.928 9 C -0.055 4.055 10 C -0.184 4.184 11 C 0.106 3.894 12 O -0.231 6.231 13 C -0.410 4.410 14 H 0.104 0.896 15 C -0.024 4.024 16 N -0.922 5.922 17 Si 1.016 2.984 18 H -0.257 1.257 19 H -0.275 1.275 20 H -0.257 1.257 21 C -0.222 4.222 22 C -0.087 4.087 23 C -0.158 4.158 24 Cl -0.040 7.040 25 C 0.039 3.961 26 H 0.193 0.807 27 H 0.427 0.573 28 H 0.147 0.853 29 H 0.116 0.884 30 H 0.271 0.729 31 H 0.126 0.874 32 H 0.148 0.852 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.992 -11.634 16.784 22.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.020 4.020 3 C -0.144 4.144 4 C 0.054 3.946 5 N -0.254 5.254 6 C 0.189 3.811 7 N -0.252 5.252 8 C -0.022 4.022 9 C -0.075 4.075 10 C -0.204 4.204 11 C 0.056 3.944 12 O -0.138 6.138 13 C -0.486 4.486 14 H 0.122 0.878 15 C -0.221 4.221 16 N -0.560 5.560 17 Si 0.836 3.164 18 H -0.181 1.181 19 H -0.200 1.200 20 H -0.182 1.182 21 C -0.241 4.241 22 C -0.107 4.107 23 C -0.192 4.192 24 Cl -0.012 7.012 25 C 0.011 3.989 26 H 0.210 0.790 27 H 0.268 0.732 28 H 0.164 0.836 29 H 0.134 0.866 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.166 0.834 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -11.099 -10.989 15.800 22.217 hybrid contribution 1.069 -0.223 0.598 1.245 sum -10.030 -11.212 16.398 22.253 Atomic orbital electron populations 1.81329 1.13044 1.09971 1.09580 1.25164 0.91826 0.92454 0.92559 1.16513 0.84876 1.07803 1.05180 1.23173 0.87569 0.91220 0.92592 1.67784 1.08850 1.23621 1.25136 1.18431 0.85623 0.88258 0.88804 1.41924 1.01917 1.50017 1.31340 1.17264 0.95053 1.01137 0.88739 1.20759 0.99291 0.97383 0.90088 1.20280 0.95347 1.03828 1.00925 1.19919 0.93373 0.91748 0.89390 1.83954 1.30713 1.60952 1.38166 1.21779 0.90786 1.36664 0.99394 0.87841 1.26547 1.04118 0.97178 0.94273 1.70190 1.39914 1.41996 1.03938 0.84679 0.74697 0.78847 0.78216 1.18106 1.20001 1.18162 1.21051 1.03123 1.06573 0.93398 1.20741 0.94809 0.95947 0.99183 1.20872 0.93018 1.03978 1.01354 1.98387 1.72331 1.68630 1.61831 1.21445 0.90420 0.92941 0.94060 0.78992 0.73161 0.83565 0.86607 0.91967 0.85602 0.83436 0.80387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.07 18.54 19.00 0.35 -9.72 16 2 C 0.29 4.80 15.37 88.33 1.36 6.15 16 3 C -0.13 -1.76 5.75 -21.19 -0.12 -1.88 16 4 C 0.22 3.28 10.91 85.05 0.93 4.21 16 5 N -0.54 -11.26 7.01 -192.10 -1.35 -12.60 16 6 C 0.43 8.35 7.21 133.20 0.96 9.31 16 7 N -0.63 -13.43 5.42 -185.29 -1.00 -14.43 16 8 C 0.07 2.10 6.30 38.21 0.24 2.34 16 9 C -0.05 -1.79 8.56 22.39 0.19 -1.60 16 10 C -0.18 -7.50 9.98 22.37 0.22 -7.27 16 11 C 0.11 5.04 6.65 22.59 0.15 5.19 16 12 O -0.23 -13.49 9.75 -22.98 -0.22 -13.71 16 13 C -0.41 -23.12 9.48 67.91 0.64 -22.48 16 14 H 0.10 5.26 5.20 -2.91 -0.02 5.25 16 15 C -0.02 -1.33 5.49 84.82 0.47 -0.86 16 16 N -0.92 -55.86 13.67 21.61 0.30 -55.57 16 17 Si 1.02 41.79 29.55 68.60 2.03 43.82 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 19 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 21 C -0.22 -8.94 9.16 22.37 0.20 -8.73 16 22 C -0.09 -2.68 9.95 22.39 0.22 -2.46 16 23 C -0.16 -2.29 6.35 22.51 0.14 -2.15 16 24 Cl -0.04 -0.51 27.60 -2.72 -0.08 -0.59 16 25 C 0.04 0.44 9.69 22.73 0.22 0.66 16 26 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 27 H 0.43 7.22 7.46 -92.71 -0.69 6.53 16 28 H 0.15 4.19 6.23 -2.91 -0.02 4.17 16 29 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.27 15.14 8.31 -92.71 -0.77 14.36 16 31 H 0.13 5.12 5.63 -2.91 -0.02 5.11 16 32 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -70.79 318.80 6.37 -64.41 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.52 Total: 17.96 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 5.83 Total: -19.57 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -1.70 Total: -92.32 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.22 Total: -13.71 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -70.79 6.37 -64.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.038 kcal (2) G-P(sol) polarization free energy of solvation -70.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds