Wall clock time and date at job start Tue Mar 31 2020 11:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.40021 * 120.59950 * 27.34472 * 3 2 1 5 5 C 1.38288 * 118.38458 * 179.97438 * 4 3 2 6 6 C 1.38557 * 119.49115 * 359.97438 * 5 4 3 7 7 Cl 1.73602 * 119.40107 * 180.02562 * 6 5 4 8 8 N 1.31964 * 121.19295 * 359.74253 * 6 5 4 9 9 C 1.32406 * 121.76009 * 0.53232 * 8 6 5 10 10 N 1.38462 * 119.81917 * 179.75400 * 9 8 6 11 11 C 1.39846 * 119.99808 * 3.24428 * 10 9 8 12 12 C 1.38968 * 120.00659 * 324.37676 * 11 10 9 13 13 C 1.37994 * 119.99401 * 179.79138 * 12 11 10 14 14 C 1.38912 * 120.00680 * 0.45789 * 13 12 11 15 15 O 1.35783 * 119.99597 * 179.76646 * 14 13 12 16 16 C 1.34815 * 117.00000 * 186.00385 * 15 14 13 17 17 H 1.08004 * 120.00126 * 354.89451 * 16 15 14 18 18 C 1.38618 * 120.00069 * 174.90064 * 16 15 14 19 19 N 1.31586 * 120.00135 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99796 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46873 * 90.00197 * 20 18 16 22 22 H 1.48502 * 109.47046 * 209.99661 * 20 18 16 23 23 H 1.48498 * 109.47260 * 330.00502 * 20 18 16 24 24 C 1.38915 * 120.01135 * 359.79577 * 14 13 12 25 25 C 1.38003 * 120.00337 * 359.97424 * 24 14 13 26 26 H 1.08004 * 120.80903 * 359.97438 * 4 3 2 27 27 H 1.07996 * 120.24996 * 179.97438 * 5 4 3 28 28 H 0.96998 * 120.00705 * 183.25034 * 10 9 8 29 29 H 1.07996 * 120.00073 * 0.02562 * 12 11 10 30 30 H 1.07995 * 119.99795 * 180.25855 * 13 12 11 31 31 H 0.97000 * 120.00021 * 179.97438 * 19 18 16 32 32 H 1.08001 * 119.99917 * 179.97438 * 24 14 13 33 33 H 1.08002 * 120.00160 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2812 -1.0696 -0.5536 5 6 4.6630 -1.0213 -0.5295 6 6 5.2975 0.0734 0.0352 7 17 7.0323 0.1320 0.0636 8 7 4.6070 1.0748 0.5469 9 6 3.2829 1.0763 0.5544 10 7 2.5988 2.1460 1.1065 11 6 3.3042 3.2512 1.5928 12 6 4.5355 3.0723 2.2120 13 6 5.2333 4.1635 2.6879 14 6 4.7009 5.4398 2.5567 15 8 5.3856 6.5128 3.0294 16 6 4.7606 7.7064 2.9833 17 1 3.7942 7.7920 2.5087 18 6 5.3583 8.8240 3.5449 19 7 4.7485 9.9891 3.4994 20 14 7.0295 8.6758 4.3662 21 1 8.0974 8.9161 3.3625 22 1 7.1374 9.6811 5.4539 23 1 7.1825 7.3126 4.9350 24 6 3.4678 5.6184 1.9426 25 6 2.7716 4.5280 1.4622 26 1 2.7647 -1.9124 -0.9889 27 1 5.2431 -1.8305 -0.9477 28 1 1.6302 2.1289 1.1561 29 1 4.9478 2.0797 2.3172 30 1 6.1921 4.0249 3.1654 31 1 5.1666 10.7710 3.8927 32 1 3.0538 6.6108 1.8411 33 1 1.8127 4.6669 0.9851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212606349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:48 Heat of formation + Delta-G solvation = 61.396601 kcal Electronic energy + Delta-G solvation = -21838.336019 eV Core-core repulsion = 18276.892766 eV Total energy + Delta-G solvation = -3561.443253 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.052 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.90522 -40.78951 -38.92778 -38.00006 -37.44760 -36.13339 -34.38717 -33.77661 -32.03545 -31.51123 -29.23463 -27.12292 -25.77598 -24.42775 -23.74944 -22.43853 -20.36742 -19.88048 -19.21712 -18.97595 -18.53151 -17.09670 -16.69109 -16.39591 -16.24248 -15.74189 -15.57954 -15.43625 -14.97372 -14.59845 -14.48422 -14.41222 -14.24975 -14.17755 -13.97691 -13.60697 -13.38788 -13.25800 -12.95687 -12.57951 -12.53525 -12.27872 -11.97163 -11.68108 -11.32021 -10.94064 -10.79773 -10.65917 -9.83800 -9.63097 -8.48644 -8.42491 -6.19502 -0.57813 0.11583 0.52325 0.69559 0.73027 1.33752 1.37831 1.47803 1.53863 1.79736 1.87909 2.29928 2.66359 2.72544 2.80447 3.04845 3.19235 3.37668 3.71031 3.97207 4.01901 4.12462 4.15512 4.47972 4.58037 4.66765 4.85931 4.90517 5.09043 5.16306 5.29118 5.38320 5.51744 5.70274 5.78321 5.95200 6.04000 6.25908 6.33685 6.81111 6.86346 7.60571 8.63180 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.003343 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.338963 B = 8374.825134 C = 9840.104837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.281 3.719 3 C -0.149 4.149 4 C 0.050 3.950 5 C -0.197 4.197 6 C 0.238 3.762 7 Cl -0.022 7.022 8 N -0.552 5.552 9 C 0.450 3.550 10 N -0.639 5.639 11 C 0.078 3.922 12 C -0.057 4.057 13 C -0.171 4.171 14 C 0.115 3.885 15 O -0.243 6.243 16 C -0.397 4.397 17 H 0.083 0.917 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.969 3.031 21 H -0.266 1.266 22 H -0.269 1.269 23 H -0.261 1.261 24 C -0.216 4.216 25 C -0.092 4.092 26 H 0.196 0.804 27 H 0.189 0.811 28 H 0.423 0.577 29 H 0.153 0.847 30 H 0.132 0.868 31 H 0.284 0.716 32 H 0.116 0.884 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.839 -26.853 -8.710 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.034 4.034 3 C -0.161 4.161 4 C 0.023 3.977 5 C -0.221 4.221 6 C 0.072 3.928 7 Cl 0.007 6.993 8 N -0.271 5.271 9 C 0.211 3.789 10 N -0.262 5.262 11 C -0.016 4.016 12 C -0.077 4.077 13 C -0.191 4.191 14 C 0.066 3.934 15 O -0.150 6.150 16 C -0.473 4.473 17 H 0.100 0.900 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.791 3.209 21 H -0.191 1.191 22 H -0.194 1.194 23 H -0.185 1.185 24 C -0.235 4.235 25 C -0.113 4.113 26 H 0.213 0.787 27 H 0.206 0.794 28 H 0.262 0.738 29 H 0.171 0.829 30 H 0.150 0.850 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.043 -25.782 -8.151 27.040 hybrid contribution 0.074 0.496 0.066 0.506 sum 0.031 -25.286 -8.085 26.547 Atomic orbital electron populations 1.81361 1.12623 1.08181 1.10406 1.25247 0.91995 0.93379 0.92776 1.16239 0.84820 0.99842 1.15200 1.21831 0.92684 0.94824 0.88369 1.21861 0.94667 0.99898 1.05635 1.22003 0.87714 0.90554 0.92574 1.98452 1.06371 1.98055 1.96411 1.66649 1.06155 1.29523 1.24790 1.17973 0.86978 0.86034 0.87906 1.41791 1.08641 1.14751 1.61044 1.17316 0.95388 0.85832 1.03069 1.20937 0.93515 0.98729 0.94507 1.20356 1.02547 0.88855 1.07337 1.19631 0.91618 0.87933 0.94252 1.83525 1.41807 1.14792 1.74905 1.20708 1.04759 0.83247 1.38627 0.89982 1.25260 1.03080 0.93327 0.97164 1.69742 1.40648 1.00134 1.45992 0.85236 0.78209 0.78804 0.78629 1.19130 1.19402 1.18497 1.21057 0.96832 0.99625 1.06016 1.20715 1.00621 0.90017 0.99915 0.78728 0.79424 0.73825 0.82947 0.85039 0.90634 0.86636 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.89 18.54 19.00 0.35 -9.54 16 2 C 0.28 4.86 14.13 88.33 1.25 6.11 16 3 C -0.15 -2.16 5.77 -21.04 -0.12 -2.28 16 4 C 0.05 0.36 9.90 22.71 0.22 0.59 16 5 C -0.20 -1.63 9.85 22.36 0.22 -1.41 16 6 C 0.24 3.89 7.27 84.75 0.62 4.50 16 7 Cl -0.02 -0.36 29.10 -2.72 -0.08 -0.44 16 8 N -0.55 -12.18 6.85 -183.19 -1.25 -13.44 16 9 C 0.45 9.21 7.32 133.60 0.98 10.19 16 10 N -0.64 -14.96 5.39 -184.70 -0.99 -15.95 16 11 C 0.08 2.39 6.30 38.21 0.24 2.63 16 12 C -0.06 -1.83 8.60 22.39 0.19 -1.64 16 13 C -0.17 -6.59 9.98 22.37 0.22 -6.36 16 14 C 0.12 5.32 6.65 22.59 0.15 5.47 16 15 O -0.24 -13.08 8.58 -22.95 -0.20 -13.27 16 16 C -0.40 -23.23 9.94 67.91 0.68 -22.55 16 17 H 0.08 5.00 5.43 -2.91 -0.02 4.99 16 18 C 0.01 0.57 5.49 84.82 0.47 1.04 16 19 N -0.92 -55.18 13.96 21.61 0.30 -54.88 16 20 Si 0.97 45.35 28.62 68.60 1.96 47.31 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 24 C -0.22 -9.27 9.16 22.38 0.20 -9.06 16 25 C -0.09 -3.14 9.96 22.39 0.22 -2.91 16 26 H 0.20 -0.12 8.06 -2.91 -0.02 -0.15 16 27 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 28 H 0.42 8.60 7.66 -92.71 -0.71 7.89 16 29 H 0.15 4.40 6.13 -2.91 -0.02 4.39 16 30 H 0.13 4.71 8.06 -2.91 -0.02 4.68 16 31 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.12 5.44 5.63 -2.91 -0.02 5.42 16 33 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -69.71 318.06 6.13 -63.58 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.50 Total: 12.33 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 5.54 Total: -15.70 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -1.59 Total: -93.81 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.20 Total: -13.27 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.96 Total: 47.31 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -0.08 Total: -0.44 kcal Total: -69.71 6.13 -63.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.976 kcal (2) G-P(sol) polarization free energy of solvation -69.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds