Wall clock time and date at job start Tue Mar 31 2020 11:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99931 * 2 1 4 4 H 1.48490 * 109.47085 * 240.00309 * 3 2 1 5 5 H 1.48504 * 109.46769 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46916 * 120.00147 * 3 2 1 7 7 C 1.38814 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99649 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.47431 * 125.64939 * 0.02976 * 9 7 2 11 11 C 1.54915 * 104.92609 * 155.79370 * 10 9 7 12 12 C 1.55439 * 101.45240 * 37.00513 * 11 10 9 13 13 H 1.08997 * 110.86297 * 82.95852 * 12 11 10 14 14 O 1.42902 * 110.70646 * 206.14718 * 12 11 10 15 15 C 1.35905 * 116.99870 * 198.53022 * 14 12 11 16 16 C 1.38756 * 120.04674 * 354.61254 * 15 14 12 17 17 C 1.38137 * 119.96752 * 179.75106 * 16 15 14 18 18 C 1.38265 * 120.06857 * 0.55518 * 17 16 15 19 19 C 1.38369 * 120.09414 * 359.69782 * 18 17 16 20 20 Cl 1.73605 * 119.98394 * 180.02562 * 19 18 17 21 21 C 1.38274 * 120.03089 * 0.02889 * 19 18 17 22 22 C 1.50707 * 120.03283 * 179.97438 * 21 19 18 23 23 Cl 1.80300 * 109.46758 * 270.01716 * 22 21 19 24 24 C 1.47027 * 125.64749 * 180.02562 * 9 7 2 25 25 H 0.96997 * 120.00040 * 359.97438 * 1 2 3 26 26 H 1.09001 * 110.36244 * 274.68351 * 10 9 7 27 27 H 1.09002 * 110.36344 * 36.89942 * 10 9 7 28 28 H 1.08994 * 110.99910 * 155.13710 * 11 10 9 29 29 H 1.08999 * 111.00178 * 278.98778 * 11 10 9 30 30 H 1.08002 * 120.01851 * 0.02915 * 16 15 14 31 31 H 1.07996 * 119.96809 * 180.29976 * 17 16 15 32 32 H 1.07994 * 119.95699 * 179.72460 * 18 17 16 33 33 H 1.08995 * 109.46928 * 30.01774 * 22 21 19 34 34 H 1.09004 * 109.47090 * 150.02078 * 22 21 19 35 35 H 1.09002 * 109.88241 * 300.50288 * 24 9 7 36 36 H 1.09000 * 109.88249 * 61.51346 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1415 -2.5331 -0.0006 11 6 -0.4042 -3.9311 -0.6143 12 6 0.7785 -4.7524 -0.0287 13 1 0.5481 -5.1009 0.9780 14 8 1.1005 -5.8530 -0.8814 15 6 1.8265 -6.8642 -0.3360 16 6 2.3160 -6.7490 0.9572 17 6 3.0493 -7.7800 1.5118 18 6 3.3059 -8.9218 0.7754 19 6 2.8236 -9.0373 -0.5163 20 17 3.1470 -10.4724 -1.4381 21 6 2.0843 -8.0101 -1.0734 22 6 1.5595 -8.1356 -2.4805 23 17 2.7782 -7.4814 -3.6370 24 6 1.9319 -3.7275 -0.0005 25 1 -0.4850 0.8400 0.0004 26 1 -0.5272 -2.4874 1.0178 27 1 -0.5994 -1.7573 -0.6142 28 1 -1.3623 -4.3301 -0.2814 29 1 -0.3544 -3.8956 -1.7026 30 1 2.1198 -5.8557 1.5316 31 1 3.4261 -7.6924 2.5201 32 1 3.8833 -9.7248 1.2092 33 1 1.3716 -9.1854 -2.7059 34 1 0.6310 -7.5721 -2.5737 35 1 2.5588 -3.8507 -0.8837 36 1 2.5301 -3.8636 0.9004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222819284.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:26 Heat of formation + Delta-G solvation = -2.656183 kcal Electronic energy + Delta-G solvation = -21635.934199 eV Core-core repulsion = 18172.820902 eV Total energy + Delta-G solvation = -3463.113296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.49202 -38.30187 -36.73668 -36.03575 -35.91142 -32.77457 -32.16332 -30.15295 -29.23685 -27.52943 -26.74093 -24.69069 -22.79488 -21.88229 -20.30874 -20.21608 -18.15468 -17.14252 -16.40637 -16.09210 -15.55226 -15.17570 -14.82480 -14.46280 -14.11923 -13.88022 -13.62766 -13.39988 -13.08018 -12.92060 -12.55288 -12.06790 -11.93812 -11.77900 -11.51837 -11.40809 -11.19275 -11.05745 -10.82715 -10.56847 -10.40649 -10.32001 -10.28145 -10.13779 -9.89875 -9.68239 -8.95815 -8.73040 -8.28286 -6.94817 -5.73498 -3.16065 0.78901 1.14831 1.81629 2.43867 3.29120 3.37717 3.41989 3.43503 3.51835 4.31753 4.42904 4.57572 4.78702 4.92222 5.13451 5.15153 5.19996 5.23025 5.27777 5.42826 5.48263 5.57922 5.66382 5.94032 6.05458 6.13871 6.18903 6.28198 6.37612 6.42473 6.50210 6.62677 7.35124 7.46384 7.53589 7.74416 8.25570 9.12855 9.73080 10.35396 11.30806 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.003339 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.497876 B = 8383.590010 C = 8733.731640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.917 3.083 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.152 3.848 11 C -0.133 4.133 12 C 0.068 3.932 13 H 0.079 0.921 14 O -0.294 6.294 15 C 0.175 3.825 16 C -0.204 4.204 17 C -0.057 4.057 18 C -0.158 4.158 19 C 0.018 3.982 20 Cl -0.061 7.061 21 C -0.143 4.143 22 C 0.017 3.983 23 Cl -0.172 7.172 24 C 0.118 3.882 25 H 0.254 0.746 26 H 0.017 0.983 27 H 0.115 0.885 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.037 0.963 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 -19.887 0.235 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.747 3.253 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.027 3.973 11 C -0.172 4.172 12 C 0.012 3.988 13 H 0.096 0.904 14 O -0.206 6.206 15 C 0.128 3.872 16 C -0.223 4.223 17 C -0.075 4.075 18 C -0.177 4.177 19 C -0.009 4.009 20 Cl -0.032 7.032 21 C -0.145 4.145 22 C -0.045 4.045 23 Cl -0.145 7.145 24 C -0.008 4.008 25 H 0.065 0.935 26 H 0.035 0.965 27 H 0.133 0.867 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.055 0.945 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.129 -19.692 -0.148 19.807 hybrid contribution 0.689 0.759 0.249 1.055 sum 2.818 -18.933 0.101 19.142 Atomic orbital electron populations 1.69732 1.04927 1.25133 1.57357 1.24792 0.95757 0.97781 1.02068 0.86115 0.78422 0.82760 0.77988 1.21024 1.21465 1.21138 1.19034 0.90561 0.82188 1.43584 0.90394 1.44352 1.01830 0.99399 1.87140 1.22015 0.84868 0.91839 0.98553 1.23254 0.94594 0.97595 1.01759 1.23842 0.97783 0.84018 0.93122 0.90360 1.86185 1.66202 1.27946 1.40261 1.18640 0.90194 0.87261 0.91139 1.21575 1.03341 1.01848 0.95518 1.20959 0.95263 0.91721 0.99589 1.20873 1.03990 0.99914 0.92906 1.20453 0.99034 0.88530 0.92899 1.98367 1.94022 1.36933 1.73900 1.18736 1.05908 0.93383 0.96488 1.22895 0.93351 1.02245 0.86015 1.98734 1.62502 1.88836 1.64425 1.21734 0.93704 0.86488 0.98922 0.93497 0.96511 0.86744 0.91358 0.90613 0.83976 0.84629 0.84772 0.88077 0.87328 0.94524 0.95598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.24 10.09 55.49 0.56 -25.68 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.92 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.22 10.27 -15.06 -0.15 -6.37 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.09 3.39 -170.06 -0.58 -15.67 16 10 C 0.15 3.54 5.89 -2.52 -0.01 3.53 16 11 C -0.13 -2.44 6.83 -24.43 -0.17 -2.61 16 12 C 0.07 1.17 2.78 -24.74 -0.07 1.10 16 13 H 0.08 1.21 6.58 -51.93 -0.34 0.87 16 14 O -0.29 -4.71 8.92 -19.44 -0.17 -4.89 16 15 C 0.18 2.48 6.60 -39.22 -0.26 2.23 16 16 C -0.20 -2.61 8.77 -39.43 -0.35 -2.95 16 17 C -0.06 -0.60 10.04 -39.61 -0.40 -0.99 16 18 C -0.16 -1.63 9.83 -39.52 -0.39 -2.02 16 19 C 0.02 0.21 6.31 -39.52 -0.25 -0.04 16 20 Cl -0.06 -0.63 27.29 -51.86 -1.42 -2.05 16 21 C -0.14 -1.84 5.27 -104.44 -0.55 -2.39 16 22 C 0.02 0.21 6.16 36.01 0.22 0.43 16 23 Cl -0.17 -2.37 29.13 -51.86 -1.51 -3.88 16 24 C 0.12 2.44 6.51 -3.06 -0.02 2.42 16 25 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.11 3.01 5.87 -51.93 -0.30 2.71 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.14 1.82 5.31 -52.49 -0.28 1.55 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.10 1.02 6.90 -51.93 -0.36 0.66 16 34 H 0.11 1.28 7.53 -51.93 -0.39 0.89 16 35 H 0.04 0.80 8.06 -51.93 -0.42 0.39 16 36 H 0.03 0.52 7.43 -51.93 -0.39 0.13 16 LS Contribution 324.81 15.07 4.89 4.89 Total: -1.00 -29.21 324.81 -9.87 -39.08 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.14 Total: -0.55 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.49 Total: -8.01 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: -0.02 Total: -41.35 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.17 Total: -4.89 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -3.01 SS G_CDS: -2.93 Total: -5.93 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.21 -9.87 -39.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222819284.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.428 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds